Wall clock time and date at job start Mon Mar 30 2020 00:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31433 * 1 3 3 Si 1.86798 * 120.00400 * 2 1 4 4 H 1.48502 * 109.47132 * 275.68159 * 3 2 1 5 5 H 1.48497 * 109.46894 * 35.67933 * 3 2 1 6 6 H 1.48498 * 109.47161 * 155.68345 * 3 2 1 7 7 C 1.38955 * 119.99445 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00155 * 339.96359 * 7 2 1 9 9 N 1.36981 * 119.99648 * 159.96836 * 7 2 1 10 10 C 1.34773 * 119.99836 * 317.78908 * 9 7 2 11 11 O 1.21741 * 120.00295 * 4.01440 * 10 9 7 12 12 C 1.46498 * 119.99831 * 184.00965 * 10 9 7 13 13 C 1.40697 * 126.55103 * 319.77657 * 12 10 9 14 14 N 1.30680 * 108.72806 * 180.02562 * 13 12 10 15 15 N 1.39904 * 109.54594 * 359.97438 * 14 13 12 16 16 C 1.36322 * 132.16619 * 180.02562 * 15 14 13 17 17 C 1.35764 * 119.15359 * 179.97438 * 16 15 14 18 18 C 1.39955 * 119.35561 * 0.24957 * 17 16 15 19 19 N 1.31508 * 120.10544 * 359.49996 * 18 17 16 20 20 C 1.33351 * 120.85938 * 0.48990 * 19 18 17 21 21 C 1.46500 * 119.99815 * 137.78825 * 9 7 2 22 22 C 1.52994 * 117.49877 * 2.63219 * 21 9 7 23 23 C 1.52999 * 117.50118 * 293.97320 * 21 9 7 24 24 H 0.97004 * 120.00196 * 359.97438 * 1 2 3 25 25 H 1.08001 * 125.62927 * 0.02562 * 13 12 10 26 26 H 1.08002 * 120.42435 * 359.97438 * 16 15 14 27 27 H 1.08009 * 120.32098 * 179.97438 * 17 16 15 28 28 H 1.08010 * 119.94552 * 179.72895 * 18 17 16 29 29 H 1.08999 * 115.54618 * 148.29541 * 21 9 7 30 30 H 1.08999 * 117.50279 * 359.97438 * 22 21 9 31 31 H 1.09009 * 117.50097 * 145.01563 * 22 21 9 32 32 H 1.09003 * 117.49884 * 214.97972 * 23 21 9 33 33 H 1.08997 * 117.49726 * 359.96993 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.3759 2.1156 -1.3932 5 1 1.5111 2.6150 0.8166 6 1 3.6008 1.4083 0.5765 7 6 2.0090 -1.2035 -0.0005 8 1 1.5180 -2.1105 0.3195 9 7 3.3166 -1.2392 -0.4069 10 6 3.7046 -0.5392 -1.4913 11 8 2.9104 0.1821 -2.0665 12 6 5.0823 -0.6464 -1.9779 13 6 6.2469 -0.7045 -1.1905 14 7 7.2836 -0.7961 -1.9808 15 7 6.8572 -0.8032 -3.3133 16 6 7.5381 -0.8816 -4.4916 17 6 6.8445 -0.8666 -5.6586 18 6 5.4490 -0.7659 -5.6260 19 7 4.8193 -0.6967 -4.4736 20 6 5.4942 -0.7112 -3.3235 21 6 4.2933 -2.0383 0.3372 22 6 3.7791 -2.8588 1.5218 23 6 4.6194 -1.6032 1.7673 24 1 -0.4850 0.8401 0.0004 25 1 6.2786 -0.6779 -0.1113 26 1 8.6157 -0.9547 -4.4967 27 1 7.3650 -0.9273 -6.6031 28 1 4.8880 -0.7487 -6.5489 29 1 5.1025 -2.4638 -0.2563 30 1 2.7143 -2.8037 1.7477 31 1 4.2503 -3.8240 1.7078 32 1 5.6431 -1.7427 2.1148 33 1 4.1077 -0.7221 2.1543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516765855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:00 Heat of formation + Delta-G solvation = 144.163157 kcal Electronic energy + Delta-G solvation = -20870.611528 eV Core-core repulsion = 17708.045845 eV Total energy + Delta-G solvation = -3162.565682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.25516 -39.02136 -37.75636 -36.27581 -33.93706 -32.80049 -31.45464 -31.03027 -29.24873 -25.36534 -24.83176 -23.18522 -22.44443 -21.86996 -20.88400 -19.48795 -18.24631 -17.15296 -16.98145 -16.42299 -16.02278 -15.61487 -15.09864 -14.33315 -14.24722 -13.72080 -13.36684 -13.18753 -13.11974 -12.81851 -12.56924 -12.36043 -11.68834 -11.25449 -11.18425 -11.07883 -10.62581 -10.26951 -10.02136 -9.96586 -9.70163 -9.60510 -9.47973 -8.52243 -8.43209 -7.71594 -7.40471 -6.13111 -3.87570 0.51090 0.85489 2.05707 2.50046 3.31404 3.52078 3.57309 3.78952 3.90548 3.94694 4.18955 4.32349 4.51473 4.57017 4.75404 4.84031 5.04817 5.21736 5.29631 5.37145 5.49142 5.55345 5.61499 5.80147 5.88568 5.97435 6.17407 6.29935 6.38638 6.55363 6.72602 6.89046 7.44501 7.75991 7.90205 8.07690 8.84556 8.99518 9.48795 9.92105 10.90778 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.007626 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.344092 B = 3670.896739 C = 4364.693264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.093 3.907 3 Si 0.915 3.085 4 H -0.255 1.255 5 H -0.313 1.313 6 H -0.281 1.281 7 C -0.345 4.345 8 H 0.098 0.902 9 N -0.429 5.429 10 C 0.530 3.470 11 O -0.528 6.528 12 C -0.240 4.240 13 C 0.113 3.887 14 N -0.318 5.318 15 N -0.312 5.312 16 C 0.159 3.841 17 C -0.227 4.227 18 C 0.167 3.833 19 N -0.433 5.433 20 C 0.289 3.711 21 C 0.062 3.938 22 C -0.171 4.171 23 C -0.204 4.204 24 H 0.272 0.728 25 H 0.204 0.796 26 H 0.177 0.823 27 H 0.166 0.834 28 H 0.179 0.821 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.637 -3.519 -7.147 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.116 4.116 3 Si 0.747 3.253 4 H -0.181 1.181 5 H -0.243 1.243 6 H -0.207 1.207 7 C -0.470 4.470 8 H 0.115 0.885 9 N -0.149 5.149 10 C 0.320 3.680 11 O -0.410 6.410 12 C -0.256 4.256 13 C -0.067 4.067 14 N -0.141 5.141 15 N -0.083 5.083 16 C 0.023 3.977 17 C -0.252 4.252 18 C -0.017 4.017 19 N -0.143 5.143 20 C 0.060 3.940 21 C -0.044 4.044 22 C -0.208 4.208 23 C -0.243 4.243 24 H 0.082 0.918 25 H 0.221 0.779 26 H 0.195 0.805 27 H 0.183 0.817 28 H 0.196 0.804 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.365 -3.099 -7.096 18.105 hybrid contribution 0.542 0.747 0.011 0.923 sum 16.907 -2.352 -7.085 18.482 Atomic orbital electron populations 1.69762 1.06861 1.28217 1.44943 1.25329 0.94918 0.99487 0.91897 0.86281 0.78888 0.82061 0.78079 1.18060 1.24270 1.20660 1.18731 0.83791 0.96071 1.48414 0.88480 1.42928 1.07704 1.42250 1.21993 1.16781 0.85112 0.84850 0.81265 1.90647 1.53191 1.39329 1.57812 1.19978 0.96360 1.20648 0.88609 1.24320 0.88545 0.93301 1.00511 1.77465 1.22000 1.31706 0.82929 1.46964 1.07501 1.47166 1.06638 1.22002 0.99634 0.94508 0.81537 1.21821 0.96170 1.08939 0.98238 1.23489 0.91798 0.90079 0.96330 1.68237 1.36843 1.13004 0.96227 1.20309 0.80016 0.99547 0.94164 1.21892 0.95562 0.99727 0.87262 1.23139 1.01825 0.94028 1.01845 1.23369 0.99962 1.00000 1.00969 0.91816 0.77939 0.80534 0.81687 0.80382 0.87264 0.86993 0.89479 0.89392 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.90 13.96 55.50 0.77 -26.12 16 2 C 0.09 2.81 4.84 -17.46 -0.08 2.73 16 3 Si 0.92 25.52 24.73 -169.99 -4.20 21.32 16 4 H -0.25 -7.59 6.25 56.52 0.35 -7.24 16 5 H -0.31 -8.47 7.11 56.52 0.40 -8.07 16 6 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 7 C -0.34 -9.88 8.66 -14.99 -0.13 -10.01 16 8 H 0.10 2.87 7.06 -52.49 -0.37 2.50 16 9 N -0.43 -10.82 2.50 -109.25 -0.27 -11.10 16 10 C 0.53 13.89 5.94 -12.93 -0.08 13.81 16 11 O -0.53 -15.97 12.18 5.15 0.06 -15.91 16 12 C -0.24 -5.22 5.40 -104.64 -0.57 -5.79 16 13 C 0.11 2.01 9.67 -17.11 -0.17 1.84 16 14 N -0.32 -5.28 12.57 30.77 0.39 -4.89 16 15 N -0.31 -4.97 3.86 -11.95 -0.05 -5.02 16 16 C 0.16 1.66 11.29 -16.44 -0.19 1.48 16 17 C -0.23 -1.93 10.05 -39.82 -0.40 -2.33 16 18 C 0.17 1.99 11.28 -17.05 -0.19 1.79 16 19 N -0.43 -8.06 10.47 -11.98 -0.13 -8.18 16 20 C 0.29 5.70 7.88 -155.82 -1.23 4.47 16 21 C 0.06 1.20 4.60 -67.93 -0.31 0.89 16 22 C -0.17 -2.99 9.80 -26.70 -0.26 -3.25 16 23 C -0.20 -3.47 9.81 -26.70 -0.26 -3.74 16 24 H 0.27 8.01 8.31 -40.82 -0.34 7.67 16 25 H 0.20 3.13 6.51 -52.49 -0.34 2.79 16 26 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 28 H 0.18 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.11 1.92 6.15 -51.93 -0.32 1.60 16 30 H 0.11 2.22 6.54 -51.93 -0.34 1.88 16 31 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 LS Contribution 283.12 15.07 4.27 4.27 Total: -1.00 -38.64 283.12 -6.11 -44.76 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -3.09 Total: -1.03 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -3.86 Total: 1.91 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.72 Total: -55.31 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.06 Total: -15.91 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -4.20 Total: 21.32 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -38.64 -6.11 -44.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516765855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.920 kcal (2) G-P(sol) polarization free energy of solvation -38.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds