Wall clock time and date at job start Mon Mar 30 2020 00:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31433 * 1 3 3 Si 1.86798 * 120.00400 * 2 1 4 4 H 1.48502 * 109.47132 * 275.68159 * 3 2 1 5 5 H 1.48497 * 109.46894 * 35.67933 * 3 2 1 6 6 H 1.48498 * 109.47161 * 155.68345 * 3 2 1 7 7 C 1.38955 * 119.99445 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00155 * 339.96359 * 7 2 1 9 9 N 1.36981 * 119.99648 * 159.96836 * 7 2 1 10 10 C 1.34773 * 119.99836 * 317.78908 * 9 7 2 11 11 O 1.21741 * 120.00295 * 4.01440 * 10 9 7 12 12 C 1.46498 * 119.99831 * 184.00965 * 10 9 7 13 13 C 1.40697 * 126.55103 * 319.77657 * 12 10 9 14 14 N 1.30680 * 108.72806 * 180.02562 * 13 12 10 15 15 N 1.39904 * 109.54594 * 359.97438 * 14 13 12 16 16 C 1.36322 * 132.16619 * 180.02562 * 15 14 13 17 17 C 1.35764 * 119.15359 * 179.97438 * 16 15 14 18 18 C 1.39955 * 119.35561 * 0.24957 * 17 16 15 19 19 N 1.31508 * 120.10544 * 359.49996 * 18 17 16 20 20 C 1.33351 * 120.85938 * 0.48990 * 19 18 17 21 21 C 1.46500 * 119.99815 * 137.78825 * 9 7 2 22 22 C 1.52994 * 117.49877 * 2.63219 * 21 9 7 23 23 C 1.52999 * 117.50118 * 293.97320 * 21 9 7 24 24 H 0.97004 * 120.00196 * 359.97438 * 1 2 3 25 25 H 1.08001 * 125.62927 * 0.02562 * 13 12 10 26 26 H 1.08002 * 120.42435 * 359.97438 * 16 15 14 27 27 H 1.08009 * 120.32098 * 179.97438 * 17 16 15 28 28 H 1.08010 * 119.94552 * 179.72895 * 18 17 16 29 29 H 1.08999 * 115.54618 * 148.29541 * 21 9 7 30 30 H 1.08999 * 117.50279 * 359.97438 * 22 21 9 31 31 H 1.09009 * 117.50097 * 145.01563 * 22 21 9 32 32 H 1.09003 * 117.49884 * 214.97972 * 23 21 9 33 33 H 1.08997 * 117.49726 * 359.96993 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.3759 2.1156 -1.3932 5 1 1.5111 2.6150 0.8166 6 1 3.6008 1.4083 0.5765 7 6 2.0090 -1.2035 -0.0005 8 1 1.5180 -2.1105 0.3195 9 7 3.3166 -1.2392 -0.4069 10 6 3.7046 -0.5392 -1.4913 11 8 2.9104 0.1821 -2.0665 12 6 5.0823 -0.6464 -1.9779 13 6 6.2469 -0.7045 -1.1905 14 7 7.2836 -0.7961 -1.9808 15 7 6.8572 -0.8032 -3.3133 16 6 7.5381 -0.8816 -4.4916 17 6 6.8445 -0.8666 -5.6586 18 6 5.4490 -0.7659 -5.6260 19 7 4.8193 -0.6967 -4.4736 20 6 5.4942 -0.7112 -3.3235 21 6 4.2933 -2.0383 0.3372 22 6 3.7791 -2.8588 1.5218 23 6 4.6194 -1.6032 1.7673 24 1 -0.4850 0.8401 0.0004 25 1 6.2786 -0.6779 -0.1113 26 1 8.6157 -0.9547 -4.4967 27 1 7.3650 -0.9273 -6.6031 28 1 4.8880 -0.7487 -6.5489 29 1 5.1025 -2.4638 -0.2563 30 1 2.7143 -2.8037 1.7477 31 1 4.2503 -3.8240 1.7078 32 1 5.6431 -1.7427 2.1148 33 1 4.1077 -0.7221 2.1543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516765855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:59 Heat of formation + Delta-G solvation = 114.545592 kcal Electronic energy + Delta-G solvation = -20871.895842 eV Core-core repulsion = 17708.045845 eV Total energy + Delta-G solvation = -3163.849996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.45309 -40.76796 -38.97302 -37.98738 -35.16835 -34.78500 -33.38967 -32.17099 -30.65038 -27.23101 -25.87338 -24.66270 -23.84333 -23.26766 -22.36840 -21.23266 -19.68406 -18.55761 -18.25086 -18.02825 -17.39771 -16.97032 -16.68630 -15.97715 -15.68717 -15.24343 -15.07510 -14.77106 -14.64069 -14.45627 -13.82860 -13.73214 -13.53576 -12.96130 -12.67890 -12.37000 -12.31792 -12.15828 -12.02685 -11.62060 -11.21479 -10.80780 -10.75480 -10.60529 -10.45204 -9.40271 -9.02900 -8.42380 -6.13905 -0.50585 -0.19026 0.96630 1.06284 1.26794 1.35875 1.51363 2.05916 2.40147 2.48431 2.68526 2.89699 2.96740 3.07529 3.25080 3.56906 3.92857 4.00852 4.05033 4.11691 4.19140 4.34834 4.37439 4.49970 4.61411 4.88719 4.96630 5.04213 5.12594 5.25677 5.46884 5.47553 5.71069 5.88652 6.22658 6.67261 6.79099 6.92030 7.34990 7.92508 8.65469 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.007626 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.344092 B = 3670.896739 C = 4364.693264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.048 3.952 3 Si 0.964 3.036 4 H -0.290 1.290 5 H -0.305 1.305 6 H -0.265 1.265 7 C -0.336 4.336 8 H 0.076 0.924 9 N -0.446 5.446 10 C 0.532 3.468 11 O -0.586 6.586 12 C -0.309 4.309 13 C 0.129 3.871 14 N -0.317 5.317 15 N -0.310 5.310 16 C 0.150 3.850 17 C -0.196 4.196 18 C 0.181 3.819 19 N -0.512 5.512 20 C 0.290 3.710 21 C 0.038 3.962 22 C -0.165 4.165 23 C -0.182 4.182 24 H 0.272 0.728 25 H 0.221 0.779 26 H 0.227 0.773 27 H 0.230 0.770 28 H 0.217 0.783 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.139 0.861 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.565 -4.471 -8.934 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.156 4.156 3 Si 0.796 3.204 4 H -0.218 1.218 5 H -0.235 1.235 6 H -0.189 1.189 7 C -0.463 4.463 8 H 0.093 0.907 9 N -0.165 5.165 10 C 0.324 3.676 11 O -0.472 6.472 12 C -0.326 4.326 13 C -0.051 4.051 14 N -0.140 5.140 15 N -0.079 5.079 16 C 0.016 3.984 17 C -0.219 4.219 18 C 0.002 3.998 19 N -0.225 5.225 20 C 0.058 3.942 21 C -0.066 4.066 22 C -0.203 4.203 23 C -0.220 4.220 24 H 0.081 0.919 25 H 0.237 0.763 26 H 0.243 0.757 27 H 0.247 0.753 28 H 0.233 0.767 29 H 0.151 0.849 30 H 0.097 0.903 31 H 0.147 0.853 32 H 0.157 0.843 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 21.370 -4.087 -8.884 23.501 hybrid contribution -0.774 0.911 0.138 1.203 sum 20.596 -3.176 -8.746 22.600 Atomic orbital electron populations 1.69835 1.07835 1.28536 1.48374 1.25884 0.95375 1.01782 0.92561 0.85482 0.78992 0.79962 0.75980 1.21836 1.23461 1.18911 1.18626 0.85903 0.94828 1.46896 0.90676 1.43057 1.07462 1.42995 1.23006 1.17459 0.86728 0.82981 0.80448 1.90572 1.55541 1.41711 1.59343 1.19533 0.94776 1.27481 0.90777 1.24409 0.87264 0.92194 1.01219 1.77396 1.21168 1.32179 0.83242 1.47213 1.06607 1.46298 1.07791 1.23207 1.02056 0.93040 0.80065 1.22547 0.94471 1.04757 1.00126 1.24464 0.94198 0.85519 0.95653 1.68279 1.39018 1.17506 0.97708 1.20287 0.81684 0.98227 0.94033 1.22151 0.95601 1.00681 0.88182 1.23192 1.00561 0.96306 1.00231 1.23436 1.02145 0.98500 0.97919 0.91884 0.76267 0.75660 0.75349 0.76690 0.84879 0.90287 0.85336 0.84340 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.02 13.96 21.67 0.30 -59.71 16 2 C 0.05 3.08 4.84 84.92 0.41 3.49 16 3 Si 0.96 55.71 24.73 68.60 1.70 57.41 16 4 H -0.29 -18.34 6.25 99.48 0.62 -17.72 16 5 H -0.30 -16.77 7.11 99.48 0.71 -16.06 16 6 H -0.26 -14.22 7.11 99.48 0.71 -13.51 16 7 C -0.34 -20.33 8.66 84.06 0.73 -19.60 16 8 H 0.08 4.76 7.06 -2.91 -0.02 4.74 16 9 N -0.45 -23.27 2.50 -617.77 -1.54 -24.82 16 10 C 0.53 29.01 5.94 86.40 0.51 29.52 16 11 O -0.59 -37.55 12.18 -4.48 -0.05 -37.61 16 12 C -0.31 -13.58 5.40 -19.88 -0.11 -13.69 16 13 C 0.13 4.42 9.67 85.46 0.83 5.25 16 14 N -0.32 -9.68 12.57 -56.55 -0.71 -10.39 16 15 N -0.31 -8.92 3.86 -191.73 -0.74 -9.67 16 16 C 0.15 2.30 11.29 83.42 0.94 3.25 16 17 C -0.20 -2.08 10.05 22.11 0.22 -1.85 16 18 C 0.18 3.62 11.28 85.16 0.96 4.58 16 19 N -0.51 -18.68 10.47 -191.82 -2.01 -20.69 16 20 C 0.29 11.24 7.88 134.00 1.06 12.29 16 21 C 0.04 1.47 4.60 44.99 0.21 1.68 16 22 C -0.17 -5.61 9.80 30.61 0.30 -5.31 16 23 C -0.18 -5.82 9.81 30.62 0.30 -5.52 16 24 H 0.27 17.01 8.31 -92.71 -0.77 16.24 16 25 H 0.22 6.31 6.51 -2.91 -0.02 6.29 16 26 H 0.23 1.19 8.06 -2.91 -0.02 1.16 16 27 H 0.23 -0.42 8.06 -2.91 -0.02 -0.44 16 28 H 0.22 2.39 8.06 -2.91 -0.02 2.37 16 29 H 0.13 4.47 6.15 -2.39 -0.01 4.45 16 30 H 0.08 3.23 6.54 -2.39 -0.02 3.22 16 31 H 0.13 3.27 8.14 -2.38 -0.02 3.25 16 32 H 0.14 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -96.03 283.12 4.37 -91.66 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: 1.07 Total: -0.27 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 6.36 Total: 14.08 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -4.70 Total: -125.27 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.05 Total: -37.61 kcal Atomic # 14 Polarization: 55.71 SS G_CDS: 1.70 Total: 57.41 kcal Total: -96.03 4.37 -91.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516765855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.208 kcal (2) G-P(sol) polarization free energy of solvation -96.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds