Wall clock time and date at job start Mon Mar 30 2020 01:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 Cl 1.73606 * 120.00042 * 2 1 4 4 C 1.31161 * 120.00194 * 179.97438 * 2 1 3 5 5 C 1.50703 * 120.00171 * 180.02562 * 4 2 1 6 6 N 1.46897 * 109.47306 * 124.99652 * 5 4 2 7 7 C 1.46905 * 110.99826 * 189.99830 * 6 5 4 8 8 C 1.53243 * 109.33672 * 187.25448 * 7 6 5 9 9 N 1.47076 * 108.52280 * 306.17389 * 8 7 6 10 10 C 1.34777 * 120.88062 * 231.18540 * 9 8 7 11 11 O 1.21687 * 120.00006 * 5.22924 * 10 9 8 12 12 C 1.46376 * 120.00313 * 185.22734 * 10 9 8 13 13 H 1.07997 * 119.99552 * 354.99977 * 12 10 9 14 14 C 1.40044 * 120.00321 * 175.00114 * 12 10 9 15 15 N 1.30673 * 119.99689 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00192 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47234 * 269.99511 * 16 14 12 18 18 H 1.48504 * 109.46981 * 29.99629 * 16 14 12 19 19 H 1.48500 * 109.47228 * 149.99275 * 16 14 12 20 20 C 1.47077 * 118.23996 * 51.45605 * 9 8 7 21 21 C 1.46898 * 111.00153 * 314.30128 * 6 5 4 22 22 H 1.09000 * 109.46587 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47342 * 300.00121 * 1 2 3 24 24 H 1.09000 * 109.46995 * 60.00153 * 1 2 3 25 25 H 1.07995 * 119.99778 * 359.97438 * 4 2 1 26 26 H 1.09008 * 109.47033 * 4.99731 * 5 4 2 27 27 H 1.09000 * 109.46752 * 245.00151 * 5 4 2 28 28 H 1.08994 * 109.49159 * 67.30254 * 7 6 5 29 29 H 1.08996 * 109.49043 * 307.21370 * 7 6 5 30 30 H 1.08999 * 109.62657 * 186.46027 * 8 7 6 31 31 H 1.09002 * 109.78902 * 65.97743 * 8 7 6 32 32 H 0.97000 * 120.00181 * 180.02562 * 15 14 12 33 33 H 1.09007 * 109.62715 * 68.25082 * 20 9 8 34 34 H 1.09000 * 109.63081 * 188.83321 * 20 9 8 35 35 H 1.09001 * 109.49368 * 292.70476 * 21 6 5 36 36 H 1.08999 * 109.49029 * 52.75792 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3750 1.5035 0.0000 4 6 2.1628 -1.1359 0.0005 5 6 3.6698 -1.1359 0.0011 6 7 4.1591 -1.9299 1.1360 7 6 5.6079 -1.7612 1.3108 8 6 6.1070 -2.7379 2.3809 9 7 5.3068 -2.5446 3.5997 10 6 5.9009 -2.3553 4.7945 11 8 7.1112 -2.2475 4.8620 12 6 5.0905 -2.2792 6.0111 13 1 4.0128 -2.2937 5.9437 14 6 5.7127 -2.1877 7.2624 15 7 7.0168 -2.1707 7.3439 16 14 4.6784 -2.0914 8.8149 17 1 4.3912 -0.6691 9.1309 18 1 3.4014 -2.8195 8.6049 19 1 5.4206 -2.7090 9.9432 20 6 3.8411 -2.5694 3.4810 21 6 3.4311 -1.5934 2.3667 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6228 -2.0711 0.0013 26 1 4.0332 -0.1120 0.0905 27 1 4.0335 -1.5704 -0.9301 28 1 5.8199 -0.7390 1.6242 29 1 6.1143 -1.9653 0.3674 30 1 7.1568 -2.5394 2.5968 31 1 5.9935 -3.7627 2.0271 32 1 7.4478 -2.1077 8.2106 33 1 3.5111 -3.5773 3.2289 34 1 3.3920 -2.2594 4.4246 35 1 3.6734 -0.5735 2.6653 36 1 2.3588 -1.6754 2.1889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528517981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:58 Heat of formation + Delta-G solvation = -16.959776 kcal Electronic energy + Delta-G solvation = -19052.050112 eV Core-core repulsion = 15983.605109 eV Total energy + Delta-G solvation = -3068.445003 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.00445 -37.38974 -36.41066 -34.59363 -32.99971 -32.45065 -30.63585 -29.24161 -26.88571 -25.57775 -23.23036 -22.83911 -20.66216 -19.76307 -18.77139 -16.71464 -15.84030 -15.41231 -15.35594 -14.95341 -14.35929 -14.15949 -14.06400 -13.90141 -13.60928 -13.31012 -12.51390 -12.40950 -12.15328 -11.96232 -11.78559 -11.56391 -11.38836 -11.15679 -10.96894 -10.91280 -10.73298 -10.66024 -10.38332 -10.20997 -9.96309 -8.99207 -8.85507 -8.11690 -7.57292 -7.16181 -6.19206 -4.64032 1.68700 2.13522 3.13838 3.20674 3.23711 4.05327 4.13890 4.49779 4.56124 4.64281 5.07758 5.11806 5.27434 5.38106 5.42591 5.51343 5.57029 5.69279 5.73843 5.83008 5.90677 5.92172 6.04459 6.11783 6.22873 6.29658 6.48520 6.56278 6.73824 7.24617 7.30700 7.45816 7.63478 8.14500 8.37851 9.02607 9.45784 10.58354 10.77008 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.004655 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.405514 B = 6013.160209 C = 6639.557387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.087 4.087 3 Cl -0.087 7.087 4 C -0.130 4.130 5 C 0.069 3.931 6 N -0.531 5.531 7 C 0.046 3.954 8 C 0.126 3.874 9 N -0.644 5.644 10 C 0.559 3.441 11 O -0.579 6.579 12 C -0.544 4.544 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.768 5.768 16 Si 0.906 3.094 17 H -0.272 1.272 18 H -0.264 1.264 19 H -0.279 1.279 20 C 0.129 3.871 21 C 0.041 3.959 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.139 0.861 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.268 0.732 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.035 0.965 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.679 2.925 -14.055 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.114 4.114 3 Cl -0.059 7.059 4 C -0.149 4.149 5 C -0.058 4.058 6 N -0.256 5.256 7 C -0.083 4.083 8 C 0.001 3.999 9 N -0.383 5.383 10 C 0.365 3.635 11 O -0.462 6.462 12 C -0.581 4.581 13 H 0.090 0.910 14 C -0.132 4.132 15 N -0.397 5.397 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.188 1.188 19 H -0.204 1.204 20 C 0.004 3.996 21 C -0.087 4.087 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.156 0.844 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.053 0.947 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.820 2.625 -13.974 18.490 hybrid contribution -0.407 1.013 0.817 1.364 sum -12.227 3.638 -13.157 18.326 Atomic orbital electron populations 1.20928 0.89128 1.03558 1.03165 1.23223 0.94923 0.86538 1.06743 1.98361 1.76495 1.34068 1.96991 1.22957 0.96748 0.96725 0.98440 1.21376 0.91253 0.97582 0.95562 1.62095 1.04483 1.54859 1.04152 1.22516 0.87301 0.99091 0.99411 1.21195 0.97167 0.96698 0.84821 1.48234 1.04582 1.78253 1.07239 1.18255 0.87607 0.76100 0.81494 1.90585 1.15037 1.55304 1.85260 1.20969 0.93448 1.53996 0.89690 0.90978 1.25724 0.94763 0.92598 1.00097 1.70016 1.09230 1.35266 1.25192 0.86399 0.80504 0.78919 0.81122 1.19753 1.18840 1.20434 1.21578 0.83098 0.97324 0.97599 1.22676 0.97540 0.98407 0.90106 0.90294 0.90633 0.90926 0.84375 0.93169 0.89820 0.94684 0.90860 0.89589 0.93260 0.92108 0.93247 0.88867 0.94661 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.20 36.00 0.37 -0.45 16 2 C -0.09 -0.88 6.49 -36.07 -0.23 -1.11 16 3 Cl -0.09 -1.01 26.85 -51.86 -1.39 -2.41 16 4 C -0.13 -1.36 7.12 -36.07 -0.26 -1.62 16 5 C 0.07 0.86 5.57 -4.98 -0.03 0.84 16 6 N -0.53 -8.05 4.77 -235.46 -1.12 -9.17 16 7 C 0.05 0.76 5.58 -3.70 -0.02 0.74 16 8 C 0.13 2.54 6.61 -3.60 -0.02 2.52 16 9 N -0.64 -15.04 3.00 -173.84 -0.52 -15.56 16 10 C 0.56 16.16 7.63 -12.99 -0.10 16.06 16 11 O -0.58 -18.96 14.49 5.20 0.08 -18.89 16 12 C -0.54 -15.35 8.86 -35.63 -0.32 -15.66 16 13 H 0.07 1.85 5.74 -52.49 -0.30 1.55 16 14 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 15 N -0.77 -23.14 11.84 55.55 0.66 -22.48 16 16 Si 0.91 20.09 29.56 -169.99 -5.02 15.07 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 C 0.13 2.47 6.50 -3.36 -0.02 2.45 16 21 C 0.04 0.67 5.28 -3.46 -0.02 0.65 16 22 H 0.08 0.48 7.79 -51.93 -0.40 0.08 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.14 1.27 7.84 -52.49 -0.41 0.86 16 26 H 0.05 0.67 5.94 -51.92 -0.31 0.36 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 30 H 0.09 1.92 7.04 -51.93 -0.37 1.55 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 33 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.09 1.85 5.46 -51.93 -0.28 1.56 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.03 6.43 -51.93 -0.33 0.69 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -33.72 306.81 -8.37 -42.10 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.92 Total: -0.04 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -0.75 Total: 6.76 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.99 Total: -47.21 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.08 Total: -18.89 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.39 Total: -2.41 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.72 -8.37 -42.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528517981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.137 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds