Wall clock time and date at job start Mon Mar 30 2020 01:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 Cl 1.73606 * 120.00042 * 2 1 4 4 C 1.31161 * 120.00194 * 179.97438 * 2 1 3 5 5 C 1.50703 * 120.00171 * 180.02562 * 4 2 1 6 6 N 1.46897 * 109.47306 * 124.99652 * 5 4 2 7 7 C 1.46905 * 110.99826 * 189.99830 * 6 5 4 8 8 C 1.53243 * 109.33672 * 187.25448 * 7 6 5 9 9 N 1.47076 * 108.52280 * 306.17389 * 8 7 6 10 10 C 1.34777 * 120.88062 * 231.18540 * 9 8 7 11 11 O 1.21687 * 120.00006 * 5.22924 * 10 9 8 12 12 C 1.46376 * 120.00313 * 185.22734 * 10 9 8 13 13 H 1.07997 * 119.99552 * 354.99977 * 12 10 9 14 14 C 1.40044 * 120.00321 * 175.00114 * 12 10 9 15 15 N 1.30673 * 119.99689 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00192 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47234 * 269.99511 * 16 14 12 18 18 H 1.48504 * 109.46981 * 29.99629 * 16 14 12 19 19 H 1.48500 * 109.47228 * 149.99275 * 16 14 12 20 20 C 1.47077 * 118.23996 * 51.45605 * 9 8 7 21 21 C 1.46898 * 111.00153 * 314.30128 * 6 5 4 22 22 H 1.09000 * 109.46587 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47342 * 300.00121 * 1 2 3 24 24 H 1.09000 * 109.46995 * 60.00153 * 1 2 3 25 25 H 1.07995 * 119.99778 * 359.97438 * 4 2 1 26 26 H 1.09008 * 109.47033 * 4.99731 * 5 4 2 27 27 H 1.09000 * 109.46752 * 245.00151 * 5 4 2 28 28 H 1.08994 * 109.49159 * 67.30254 * 7 6 5 29 29 H 1.08996 * 109.49043 * 307.21370 * 7 6 5 30 30 H 1.08999 * 109.62657 * 186.46027 * 8 7 6 31 31 H 1.09002 * 109.78902 * 65.97743 * 8 7 6 32 32 H 0.97000 * 120.00181 * 180.02562 * 15 14 12 33 33 H 1.09007 * 109.62715 * 68.25082 * 20 9 8 34 34 H 1.09000 * 109.63081 * 188.83321 * 20 9 8 35 35 H 1.09001 * 109.49368 * 292.70476 * 21 6 5 36 36 H 1.08999 * 109.49029 * 52.75792 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3750 1.5035 0.0000 4 6 2.1628 -1.1359 0.0005 5 6 3.6698 -1.1359 0.0011 6 7 4.1591 -1.9299 1.1360 7 6 5.6079 -1.7612 1.3108 8 6 6.1070 -2.7379 2.3809 9 7 5.3068 -2.5446 3.5997 10 6 5.9009 -2.3553 4.7945 11 8 7.1112 -2.2475 4.8620 12 6 5.0905 -2.2792 6.0111 13 1 4.0128 -2.2937 5.9437 14 6 5.7127 -2.1877 7.2624 15 7 7.0168 -2.1707 7.3439 16 14 4.6784 -2.0914 8.8149 17 1 4.3912 -0.6691 9.1309 18 1 3.4014 -2.8195 8.6049 19 1 5.4206 -2.7090 9.9432 20 6 3.8411 -2.5694 3.4810 21 6 3.4311 -1.5934 2.3667 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6228 -2.0711 0.0013 26 1 4.0332 -0.1120 0.0905 27 1 4.0335 -1.5704 -0.9301 28 1 5.8199 -0.7390 1.6242 29 1 6.1143 -1.9653 0.3674 30 1 7.1568 -2.5394 2.5968 31 1 5.9935 -3.7627 2.0271 32 1 7.4478 -2.1077 8.2106 33 1 3.5111 -3.5773 3.2289 34 1 3.3920 -2.2594 4.4246 35 1 3.6734 -0.5735 2.6653 36 1 2.3588 -1.6754 2.1889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528517981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:58 Heat of formation + Delta-G solvation = -40.689807 kcal Electronic energy + Delta-G solvation = -19053.079123 eV Core-core repulsion = 15983.605109 eV Total energy + Delta-G solvation = -3069.474015 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52111 -38.80181 -37.71322 -35.84895 -34.68474 -34.27063 -32.12445 -30.35930 -28.67480 -27.10144 -24.62674 -24.16557 -22.32274 -20.62533 -20.48600 -18.51798 -17.84151 -16.65902 -16.48960 -16.23757 -16.01977 -15.78106 -15.62540 -14.98451 -14.75301 -14.46139 -14.40661 -13.63189 -13.39697 -13.17865 -12.98848 -12.88523 -12.72532 -12.64668 -12.60936 -12.49205 -12.20652 -11.98340 -11.89967 -11.82981 -11.56598 -10.93672 -9.82437 -9.78469 -9.45076 -9.01056 -8.29507 -6.84577 0.88637 1.34497 1.39775 1.41365 1.56667 2.23631 2.45317 2.75172 3.01696 3.59247 3.69430 4.00901 4.11178 4.18606 4.32322 4.39973 4.43068 4.51710 4.65097 4.69836 4.73628 4.77412 4.80426 4.90631 4.95759 5.11682 5.19405 5.23948 5.37589 5.45244 5.73193 5.98327 6.06230 6.13580 6.40970 6.87324 7.41987 8.45784 8.66889 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.004655 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.405514 B = 6013.160209 C = 6639.557387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.083 4.083 3 Cl -0.108 7.108 4 C -0.138 4.138 5 C 0.070 3.930 6 N -0.526 5.526 7 C 0.058 3.942 8 C 0.123 3.877 9 N -0.649 5.649 10 C 0.539 3.461 11 O -0.634 6.634 12 C -0.569 4.569 13 H 0.094 0.906 14 C 0.028 3.972 15 N -0.824 5.824 16 Si 0.996 3.004 17 H -0.263 1.263 18 H -0.244 1.244 19 H -0.273 1.273 20 C 0.125 3.875 21 C 0.054 3.946 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.160 0.840 26 H 0.039 0.961 27 H 0.100 0.900 28 H 0.012 0.988 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.274 0.726 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.012 0.988 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.884 2.523 -14.692 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.110 4.110 3 Cl -0.080 7.080 4 C -0.157 4.157 5 C -0.057 4.057 6 N -0.251 5.251 7 C -0.071 4.071 8 C -0.001 4.001 9 N -0.386 5.386 10 C 0.346 3.654 11 O -0.522 6.522 12 C -0.605 4.605 13 H 0.112 0.888 14 C -0.187 4.187 15 N -0.454 5.454 16 Si 0.815 3.185 17 H -0.188 1.188 18 H -0.167 1.167 19 H -0.198 1.198 20 C 0.001 3.999 21 C -0.075 4.075 22 H 0.116 0.884 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.177 0.823 26 H 0.057 0.943 27 H 0.118 0.882 28 H 0.030 0.970 29 H 0.123 0.877 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.030 0.970 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.081 2.217 -14.679 21.162 hybrid contribution 0.584 1.123 0.893 1.549 sum -14.497 3.341 -13.786 20.283 Atomic orbital electron populations 1.21015 0.86955 1.05003 1.03721 1.23647 0.96217 0.85525 1.05590 1.98366 1.77160 1.35474 1.97000 1.22990 0.95428 0.97710 0.99557 1.21428 0.92893 0.96587 0.94770 1.62093 1.03183 1.55414 1.04427 1.22342 0.88915 0.96525 0.99332 1.21307 0.95393 0.98622 0.84770 1.48141 1.06721 1.76976 1.06733 1.18707 0.87225 0.75974 0.83542 1.90530 1.17238 1.57793 1.86641 1.21504 0.94656 1.54160 0.90202 0.88777 1.27014 0.96074 0.91189 1.04382 1.70198 1.11956 1.36553 1.26653 0.85045 0.78773 0.79460 0.75212 1.18778 1.16741 1.19828 1.21775 0.80314 0.99169 0.98598 1.22533 0.99402 0.95956 0.89583 0.88390 0.90462 0.89926 0.82285 0.94284 0.88180 0.96969 0.87685 0.92745 0.91680 0.91641 0.91481 0.89761 0.97010 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.20 71.24 0.73 -0.53 16 2 C -0.08 -1.43 6.49 25.49 0.17 -1.27 16 3 Cl -0.11 -2.36 26.85 -2.72 -0.07 -2.44 16 4 C -0.14 -2.43 7.12 25.49 0.18 -2.25 16 5 C 0.07 1.56 5.57 85.56 0.48 2.03 16 6 N -0.53 -14.82 4.77 -898.87 -4.29 -19.11 16 7 C 0.06 1.89 5.58 86.38 0.48 2.37 16 8 C 0.12 5.06 6.61 86.35 0.57 5.63 16 9 N -0.65 -30.83 3.00 -822.13 -2.47 -33.30 16 10 C 0.54 32.33 7.63 86.36 0.66 32.99 16 11 O -0.63 -43.87 14.49 -4.31 -0.06 -43.94 16 12 C -0.57 -32.58 8.86 24.83 0.22 -32.36 16 13 H 0.09 4.78 5.74 -2.91 -0.02 4.76 16 14 C 0.03 1.59 5.50 85.30 0.47 2.06 16 15 N -0.82 -51.30 11.84 21.83 0.26 -51.04 16 16 Si 1.00 41.08 29.56 68.60 2.03 43.10 16 17 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 18 H -0.24 -9.21 7.11 99.48 0.71 -8.50 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 C 0.12 4.65 6.50 86.50 0.56 5.21 16 21 C 0.05 1.65 5.28 86.54 0.46 2.10 16 22 H 0.10 0.78 7.79 -2.39 -0.02 0.76 16 23 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 25 H 0.16 2.19 7.84 -2.91 -0.02 2.17 16 26 H 0.04 0.99 5.94 -2.38 -0.01 0.97 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.11 2.76 8.11 -2.39 -0.02 2.75 16 30 H 0.05 2.57 7.04 -2.39 -0.02 2.55 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 33 H 0.07 2.27 8.14 -2.38 -0.02 2.26 16 34 H 0.08 3.26 5.46 -2.39 -0.01 3.25 16 35 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.11 2.60 6.43 -2.39 -0.02 2.58 16 Total: -1.00 -77.05 306.81 1.44 -75.60 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 1.08 Total: 15.13 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 4.97 Total: 15.99 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -6.50 Total: -103.46 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.06 Total: -43.94 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.07 Total: -2.44 kcal Total: -77.05 1.44 -75.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528517981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.914 kcal (2) G-P(sol) polarization free energy of solvation -77.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds