Wall clock time and date at job start Mon Mar 30 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 Cl 1.73601 * 119.99993 * 2 1 4 4 C 1.31159 * 119.99929 * 179.97438 * 2 1 3 5 5 C 1.50704 * 120.00140 * 353.38497 * 4 2 1 6 6 N 1.46897 * 109.46732 * 125.78855 * 5 4 2 7 7 C 1.46901 * 110.99660 * 189.99771 * 6 5 4 8 8 C 1.53238 * 109.34128 * 187.25131 * 7 6 5 9 9 N 1.47073 * 108.52387 * 306.17265 * 8 7 6 10 10 C 1.34771 * 120.88321 * 231.18701 * 9 8 7 11 11 O 1.21685 * 120.00179 * 184.52666 * 10 9 8 12 12 C 1.46372 * 120.00105 * 4.52221 * 10 9 8 13 13 H 1.07997 * 119.99913 * 339.42851 * 12 10 9 14 14 C 1.40048 * 120.00116 * 159.14575 * 12 10 9 15 15 N 1.30679 * 120.00142 * 171.39136 * 14 12 10 16 16 Si 1.86801 * 120.00269 * 351.39585 * 14 12 10 17 17 H 1.48498 * 109.46847 * 84.53213 * 16 14 12 18 18 H 1.48497 * 109.47611 * 204.53402 * 16 14 12 19 19 H 1.48507 * 109.46801 * 324.53692 * 16 14 12 20 20 C 1.47084 * 118.23512 * 51.45523 * 9 8 7 21 21 C 1.46900 * 111.00489 * 314.29889 * 6 5 4 22 22 H 1.08996 * 109.47336 * 265.45329 * 1 2 3 23 23 H 1.09000 * 109.46993 * 25.45704 * 1 2 3 24 24 H 1.09005 * 109.46747 * 145.45388 * 1 2 3 25 25 H 1.08002 * 119.99873 * 173.38277 * 4 2 1 26 26 H 1.08994 * 109.46822 * 5.78604 * 5 4 2 27 27 H 1.09004 * 109.46868 * 245.78840 * 5 4 2 28 28 H 1.09011 * 109.49156 * 67.29170 * 7 6 5 29 29 H 1.08998 * 109.51926 * 307.23260 * 7 6 5 30 30 H 1.09005 * 109.62971 * 186.45931 * 8 7 6 31 31 H 1.08997 * 109.78393 * 65.98125 * 8 7 6 32 32 H 0.97001 * 120.00073 * 180.02562 * 15 14 12 33 33 H 1.08998 * 109.62985 * 68.25450 * 20 9 8 34 34 H 1.09005 * 109.62786 * 188.83147 * 20 9 8 35 35 H 1.09004 * 109.48988 * 292.71026 * 21 6 5 36 36 H 1.09002 * 109.48693 * 52.76142 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3750 1.5034 0.0000 4 6 2.1628 -1.1359 0.0005 5 6 1.4168 -2.4366 0.1514 6 7 1.7615 -3.3307 -0.9620 7 6 0.8833 -4.5081 -0.9828 8 6 1.3865 -5.4980 -2.0388 9 7 1.5083 -4.7902 -3.3223 10 6 0.9456 -5.2862 -4.4419 11 8 1.1251 -4.7318 -5.5102 12 6 0.1185 -6.4919 -4.3731 13 1 0.2161 -7.1666 -3.5354 14 6 -0.8037 -6.7675 -5.3904 15 7 -1.4198 -7.9196 -5.4193 16 14 -1.1530 -5.4884 -6.7061 17 1 -0.1349 -5.5942 -7.7820 18 1 -2.5035 -5.7222 -7.2778 19 1 -1.0982 -4.1318 -6.1045 20 6 2.2657 -3.5297 -3.3527 21 6 1.7228 -2.6143 -2.2439 22 1 -0.3634 -0.0815 1.0244 23 1 -0.3633 0.9279 -0.4417 24 1 -0.3633 -0.8465 -0.5828 25 1 3.2374 -1.1390 -0.1073 26 1 0.3442 -2.2432 0.1436 27 1 1.6943 -2.9072 1.0947 28 1 -0.1330 -4.1995 -1.2285 29 1 0.8914 -4.9859 -0.0032 30 1 0.6763 -6.3188 -2.1392 31 1 2.3596 -5.8900 -1.7430 32 1 -2.0582 -8.1106 -6.1241 33 1 3.3224 -3.7332 -3.1791 34 1 2.1371 -3.0485 -4.3223 35 1 0.6949 -2.3322 -2.4720 36 1 2.3400 -1.7183 -2.1785 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528517988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:00 Heat of formation + Delta-G solvation = -24.386560 kcal Electronic energy + Delta-G solvation = -19129.746190 eV Core-core repulsion = 16060.979138 eV Total energy + Delta-G solvation = -3068.767053 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.30515 -37.68661 -36.77750 -35.07370 -32.97756 -32.83600 -30.80313 -28.86613 -27.09921 -26.29148 -23.78992 -23.17937 -20.89428 -19.00688 -18.64030 -17.01407 -16.41154 -16.00168 -15.11823 -15.07116 -14.76614 -14.48901 -14.29674 -13.89249 -13.65104 -13.47545 -12.64962 -12.32983 -12.22546 -12.10574 -12.02182 -11.94464 -11.66727 -11.44181 -11.05741 -11.02688 -10.79861 -10.75430 -10.62770 -10.36081 -9.54409 -9.04167 -9.02576 -8.29308 -7.96567 -7.52646 -6.63580 -4.83518 1.61407 2.02691 3.41628 3.45423 3.66239 3.94790 4.15633 4.27124 4.50632 4.51932 4.88896 5.05621 5.15740 5.24874 5.33261 5.39061 5.42261 5.46176 5.60451 5.66034 5.72615 5.76081 5.93821 6.07697 6.11551 6.15253 6.31209 6.38886 6.54608 7.00372 7.10719 7.17858 7.61239 7.86798 8.30529 8.71085 9.12357 10.01097 10.37942 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.004340 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.568675 B = 6450.523125 C = 6764.556640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.081 4.081 3 Cl -0.091 7.091 4 C -0.133 4.133 5 C 0.082 3.918 6 N -0.534 5.534 7 C 0.042 3.958 8 C 0.125 3.875 9 N -0.634 5.634 10 C 0.557 3.443 11 O -0.616 6.616 12 C -0.536 4.536 13 H 0.091 0.909 14 C 0.104 3.896 15 N -0.830 5.830 16 Si 0.960 3.040 17 H -0.275 1.275 18 H -0.318 1.318 19 H -0.270 1.270 20 C 0.124 3.876 21 C 0.044 3.956 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.128 0.872 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.282 0.718 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.035 0.965 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 12.649 13.808 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.108 4.108 3 Cl -0.063 7.063 4 C -0.152 4.152 5 C -0.045 4.045 6 N -0.259 5.259 7 C -0.086 4.086 8 C 0.001 3.999 9 N -0.368 5.368 10 C 0.366 3.634 11 O -0.507 6.507 12 C -0.572 4.572 13 H 0.109 0.891 14 C -0.113 4.113 15 N -0.460 5.460 16 Si 0.792 3.208 17 H -0.201 1.201 18 H -0.249 1.249 19 H -0.195 1.195 20 C -0.001 4.001 21 C -0.085 4.085 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.146 0.854 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.999 12.715 13.290 18.823 hybrid contribution -0.805 0.870 -0.508 1.289 sum 3.194 13.585 12.783 18.925 Atomic orbital electron populations 1.21045 0.89500 1.03800 1.03159 1.23063 0.94763 0.86528 1.06435 1.98367 1.76657 1.34249 1.96990 1.22897 1.01150 0.92463 0.98731 1.21336 0.97312 0.90019 0.95854 1.62069 1.53355 1.07622 1.02851 1.22564 0.94367 0.91679 1.00009 1.21570 1.01213 0.94596 0.82501 1.47824 1.56910 1.23350 1.08762 1.18377 0.78962 0.84775 0.81285 1.90245 1.65703 1.66116 1.28686 1.20732 1.21437 1.05707 1.09287 0.89103 1.25686 0.92868 0.95609 0.97162 1.69556 1.22564 1.21746 1.32157 0.85370 0.74055 0.81168 0.80242 1.20077 1.24869 1.19505 1.21406 0.94863 0.85842 0.97955 1.22630 0.99897 0.96675 0.89276 0.90511 0.90816 0.90064 0.85429 0.93487 0.89155 0.94243 0.90309 0.87975 0.92731 0.90826 0.92726 0.89507 0.94708 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.13 36.01 0.33 -0.70 16 2 C -0.08 -0.80 6.49 -36.07 -0.23 -1.03 16 3 Cl -0.09 -0.93 28.98 -51.86 -1.50 -2.43 16 4 C -0.13 -1.36 7.23 -36.07 -0.26 -1.62 16 5 C 0.08 0.87 5.46 -4.98 -0.03 0.84 16 6 N -0.53 -7.24 4.77 -235.46 -1.12 -8.37 16 7 C 0.04 0.61 5.58 -3.70 -0.02 0.59 16 8 C 0.13 2.23 6.50 -3.61 -0.02 2.21 16 9 N -0.63 -13.68 3.00 -173.85 -0.52 -14.20 16 10 C 0.56 14.83 7.16 -12.99 -0.09 14.74 16 11 O -0.62 -17.95 12.32 5.20 0.06 -17.89 16 12 C -0.54 -14.92 9.21 -35.63 -0.33 -15.25 16 13 H 0.09 2.49 6.25 -52.49 -0.33 2.16 16 14 C 0.10 2.95 5.52 -17.36 -0.10 2.86 16 15 N -0.83 -23.40 13.92 55.55 0.77 -22.62 16 16 Si 0.96 25.24 25.85 -169.99 -4.39 20.85 16 17 H -0.27 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.32 -7.87 7.11 56.52 0.40 -7.47 16 19 H -0.27 -7.38 6.86 56.52 0.39 -7.00 16 20 C 0.12 2.29 6.61 -3.37 -0.02 2.27 16 21 C 0.04 0.66 5.28 -3.47 -0.02 0.64 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 24 H 0.08 0.76 6.46 -51.93 -0.34 0.43 16 25 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 26 H 0.05 0.48 5.44 -51.93 -0.28 0.20 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 30 H 0.10 1.95 5.50 -51.93 -0.29 1.66 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.28 7.31 8.29 -40.82 -0.34 6.98 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.76 7.09 -51.93 -0.37 1.39 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.05 6.43 -51.93 -0.33 0.72 16 LS Contribution 302.69 15.07 4.56 4.56 Total: -1.00 -31.20 302.69 -7.82 -39.03 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -4.88 Total: -4.48 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -0.79 Total: 5.55 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.87 Total: -45.19 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.06 Total: -17.89 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -4.39 Total: 20.85 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.20 -7.82 -39.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528517988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.641 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds