Wall clock time and date at job start Mon Mar 30 2020 01:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 Cl 1.73601 * 119.99993 * 2 1 4 4 C 1.31159 * 119.99929 * 179.97438 * 2 1 3 5 5 C 1.50704 * 120.00140 * 353.38497 * 4 2 1 6 6 N 1.46897 * 109.46732 * 125.78855 * 5 4 2 7 7 C 1.46901 * 110.99660 * 189.99771 * 6 5 4 8 8 C 1.53238 * 109.34128 * 187.25131 * 7 6 5 9 9 N 1.47073 * 108.52387 * 306.17265 * 8 7 6 10 10 C 1.34771 * 120.88321 * 231.18701 * 9 8 7 11 11 O 1.21685 * 120.00179 * 184.52666 * 10 9 8 12 12 C 1.46372 * 120.00105 * 4.52221 * 10 9 8 13 13 H 1.07997 * 119.99913 * 339.42851 * 12 10 9 14 14 C 1.40048 * 120.00116 * 159.14575 * 12 10 9 15 15 N 1.30679 * 120.00142 * 171.39136 * 14 12 10 16 16 Si 1.86801 * 120.00269 * 351.39585 * 14 12 10 17 17 H 1.48498 * 109.46847 * 84.53213 * 16 14 12 18 18 H 1.48497 * 109.47611 * 204.53402 * 16 14 12 19 19 H 1.48507 * 109.46801 * 324.53692 * 16 14 12 20 20 C 1.47084 * 118.23512 * 51.45523 * 9 8 7 21 21 C 1.46900 * 111.00489 * 314.29889 * 6 5 4 22 22 H 1.08996 * 109.47336 * 265.45329 * 1 2 3 23 23 H 1.09000 * 109.46993 * 25.45704 * 1 2 3 24 24 H 1.09005 * 109.46747 * 145.45388 * 1 2 3 25 25 H 1.08002 * 119.99873 * 173.38277 * 4 2 1 26 26 H 1.08994 * 109.46822 * 5.78604 * 5 4 2 27 27 H 1.09004 * 109.46868 * 245.78840 * 5 4 2 28 28 H 1.09011 * 109.49156 * 67.29170 * 7 6 5 29 29 H 1.08998 * 109.51926 * 307.23260 * 7 6 5 30 30 H 1.09005 * 109.62971 * 186.45931 * 8 7 6 31 31 H 1.08997 * 109.78393 * 65.98125 * 8 7 6 32 32 H 0.97001 * 120.00073 * 180.02562 * 15 14 12 33 33 H 1.08998 * 109.62985 * 68.25450 * 20 9 8 34 34 H 1.09005 * 109.62786 * 188.83147 * 20 9 8 35 35 H 1.09004 * 109.48988 * 292.71026 * 21 6 5 36 36 H 1.09002 * 109.48693 * 52.76142 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3750 1.5034 0.0000 4 6 2.1628 -1.1359 0.0005 5 6 1.4168 -2.4366 0.1514 6 7 1.7615 -3.3307 -0.9620 7 6 0.8833 -4.5081 -0.9828 8 6 1.3865 -5.4980 -2.0388 9 7 1.5083 -4.7902 -3.3223 10 6 0.9456 -5.2862 -4.4419 11 8 1.1251 -4.7318 -5.5102 12 6 0.1185 -6.4919 -4.3731 13 1 0.2161 -7.1666 -3.5354 14 6 -0.8037 -6.7675 -5.3904 15 7 -1.4198 -7.9196 -5.4193 16 14 -1.1530 -5.4884 -6.7061 17 1 -0.1349 -5.5942 -7.7820 18 1 -2.5035 -5.7222 -7.2778 19 1 -1.0982 -4.1318 -6.1045 20 6 2.2657 -3.5297 -3.3527 21 6 1.7228 -2.6143 -2.2439 22 1 -0.3634 -0.0815 1.0244 23 1 -0.3633 0.9279 -0.4417 24 1 -0.3633 -0.8465 -0.5828 25 1 3.2374 -1.1390 -0.1073 26 1 0.3442 -2.2432 0.1436 27 1 1.6943 -2.9072 1.0947 28 1 -0.1330 -4.1995 -1.2285 29 1 0.8914 -4.9859 -0.0032 30 1 0.6763 -6.3188 -2.1392 31 1 2.3596 -5.8900 -1.7430 32 1 -2.0582 -8.1106 -6.1241 33 1 3.3224 -3.7332 -3.1791 34 1 2.1371 -3.0485 -4.3223 35 1 0.6949 -2.3322 -2.4720 36 1 2.3400 -1.7183 -2.1785 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528517988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:59 Heat of formation + Delta-G solvation = -45.615754 kcal Electronic energy + Delta-G solvation = -19130.666757 eV Core-core repulsion = 16060.979138 eV Total energy + Delta-G solvation = -3069.687620 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75269 -39.13720 -37.81293 -36.28658 -35.01018 -34.24539 -32.19486 -29.98024 -28.68102 -27.66272 -24.99526 -24.54153 -22.45650 -20.62908 -19.51733 -18.75867 -18.07514 -17.32581 -16.76090 -16.23616 -16.06253 -15.98526 -15.62000 -15.30934 -14.72162 -14.63034 -14.51145 -13.97311 -13.94809 -13.42447 -13.10334 -12.94051 -12.85177 -12.72775 -12.62975 -12.39887 -12.22435 -12.15891 -11.95374 -11.76354 -11.50849 -11.20778 -10.06066 -9.81890 -9.53418 -9.14432 -8.79725 -6.99479 0.83549 1.25207 1.29340 1.33160 1.54022 2.06072 2.28998 2.60405 2.97772 3.28407 3.75766 3.94682 4.02851 4.09593 4.24904 4.33833 4.37494 4.46653 4.56233 4.64211 4.69532 4.73070 4.81002 4.88674 4.93092 4.95532 5.13487 5.16821 5.31482 5.37974 5.67839 5.91874 6.02835 6.05536 6.23934 6.62900 7.12694 7.95483 8.26242 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.004340 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.568675 B = 6450.523125 C = 6764.556640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 Cl -0.095 7.095 4 C -0.139 4.139 5 C 0.085 3.915 6 N -0.534 5.534 7 C 0.052 3.948 8 C 0.120 3.880 9 N -0.634 5.634 10 C 0.552 3.448 11 O -0.648 6.648 12 C -0.552 4.552 13 H 0.088 0.912 14 C 0.074 3.926 15 N -0.850 5.850 16 Si 1.002 2.998 17 H -0.292 1.292 18 H -0.292 1.292 19 H -0.290 1.290 20 C 0.119 3.881 21 C 0.058 3.942 22 H 0.093 0.907 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.127 0.873 26 H 0.054 0.946 27 H 0.111 0.889 28 H 0.027 0.973 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.292 0.708 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.020 0.980 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 13.570 15.631 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.106 4.106 3 Cl -0.067 7.067 4 C -0.158 4.158 5 C -0.041 4.041 6 N -0.259 5.259 7 C -0.077 4.077 8 C -0.003 4.003 9 N -0.367 5.367 10 C 0.359 3.641 11 O -0.542 6.542 12 C -0.588 4.588 13 H 0.106 0.894 14 C -0.141 4.141 15 N -0.481 5.481 16 Si 0.833 3.167 17 H -0.219 1.219 18 H -0.221 1.221 19 H -0.217 1.217 20 C -0.004 4.004 21 C -0.071 4.071 22 H 0.111 0.889 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.145 0.855 26 H 0.072 0.928 27 H 0.129 0.871 28 H 0.045 0.955 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.097 13.633 15.165 20.799 hybrid contribution -0.758 0.610 -0.992 1.390 sum 3.339 14.243 14.172 20.368 Atomic orbital electron populations 1.21076 0.88629 1.03674 1.04120 1.23241 0.95355 0.86325 1.05698 1.98371 1.76834 1.34501 1.96960 1.22847 1.01135 0.92348 0.99496 1.21406 0.97857 0.89672 0.95179 1.62048 1.53204 1.07880 1.02784 1.22460 0.93456 0.91455 1.00310 1.21755 1.01776 0.95048 0.81714 1.47813 1.55880 1.24204 1.08781 1.18342 0.79168 0.84494 0.82120 1.90214 1.66965 1.66773 1.30296 1.20946 1.21925 1.06582 1.09385 0.89437 1.26131 0.93186 0.96531 0.98297 1.69552 1.23271 1.22130 1.33105 0.84798 0.74597 0.78862 0.78413 1.21921 1.22063 1.21679 1.21575 0.95466 0.84930 0.98415 1.22431 0.99162 0.96458 0.89040 0.88868 0.90547 0.90682 0.85468 0.92756 0.87143 0.95485 0.86792 0.89698 0.91191 0.89799 0.91302 0.91835 0.96145 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.13 71.24 0.65 -1.11 16 2 C -0.08 -1.37 6.49 25.49 0.17 -1.20 16 3 Cl -0.10 -1.76 28.98 -2.72 -0.08 -1.84 16 4 C -0.14 -2.43 7.23 25.49 0.18 -2.25 16 5 C 0.09 1.52 5.46 85.56 0.47 1.98 16 6 N -0.53 -12.95 4.77 -898.87 -4.29 -17.24 16 7 C 0.05 1.36 5.58 86.38 0.48 1.84 16 8 C 0.12 4.12 6.50 86.35 0.56 4.68 16 9 N -0.63 -27.17 3.00 -822.16 -2.47 -29.64 16 10 C 0.55 29.72 7.16 86.36 0.62 30.34 16 11 O -0.65 -38.45 12.32 -4.30 -0.05 -38.50 16 12 C -0.55 -31.13 9.21 24.83 0.23 -30.90 16 13 H 0.09 4.88 6.25 -2.91 -0.02 4.86 16 14 C 0.07 4.22 5.52 85.30 0.47 4.69 16 15 N -0.85 -47.78 13.92 21.84 0.30 -47.48 16 16 Si 1.00 52.33 25.85 68.60 1.77 54.10 16 17 H -0.29 -15.96 7.11 99.48 0.71 -15.25 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.29 -16.00 6.86 99.48 0.68 -15.32 16 20 C 0.12 4.34 6.61 86.50 0.57 4.91 16 21 C 0.06 1.64 5.28 86.53 0.46 2.10 16 22 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 24 H 0.07 1.24 6.46 -2.38 -0.02 1.22 16 25 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 26 H 0.05 0.93 5.44 -2.39 -0.01 0.92 16 27 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.11 2.25 8.11 -2.39 -0.02 2.23 16 30 H 0.08 3.22 5.50 -2.38 -0.01 3.21 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.29 14.98 8.29 -92.71 -0.77 14.21 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.60 7.09 -2.38 -0.02 2.58 16 35 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.10 2.42 6.43 -2.39 -0.02 2.41 16 Total: -1.00 -66.77 302.69 1.10 -65.67 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: 1.06 Total: -0.17 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 4.86 Total: 15.09 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -6.45 Total: -94.35 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.05 Total: -38.50 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 1.77 Total: 54.10 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.84 kcal Total: -66.77 1.10 -65.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528517988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.051 kcal (2) G-P(sol) polarization free energy of solvation -66.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds