Wall clock time and date at job start Mon Mar 30 2020 00:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86806 * 120.00234 * 2 1 4 4 H 1.48500 * 109.46896 * 240.00183 * 3 2 1 5 5 H 1.48495 * 109.46850 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46950 * 119.99959 * 3 2 1 7 7 C 1.40033 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00388 * 193.84411 * 7 2 1 9 9 C 1.41552 * 119.99470 * 13.83713 * 7 2 1 10 10 C 1.41174 * 120.99155 * 201.18063 * 9 7 2 11 11 C 1.37597 * 119.01068 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10888 * 359.71562 * 11 10 9 13 13 C 1.32469 * 122.23167 * 0.57960 * 12 11 10 14 14 N 1.39468 * 119.58036 * 179.70555 * 13 12 11 15 15 C 1.34778 * 119.99624 * 353.26149 * 14 13 12 16 16 O 1.21272 * 120.00331 * 4.63230 * 15 14 13 17 17 C 1.50700 * 119.99797 * 184.63547 * 15 14 13 18 18 C 1.50703 * 109.47329 * 179.97438 * 17 15 14 19 19 C 1.39868 * 125.89649 * 124.99717 * 18 17 15 20 20 C 1.35317 * 107.91680 * 180.02562 * 19 18 17 21 21 N 1.34949 * 107.74724 * 359.97438 * 20 19 18 22 22 H 0.97003 * 126.03471 * 179.97438 * 21 20 19 23 23 N 1.30833 * 125.89547 * 304.69673 * 18 17 15 24 24 C 1.38603 * 120.83837 * 359.42150 * 13 12 11 25 25 H 0.97007 * 119.99763 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.49679 * 0.04166 * 10 9 7 27 27 H 1.08004 * 119.44019 * 179.97438 * 11 10 9 28 28 H 0.96996 * 120.00269 * 172.99063 * 14 13 12 29 29 H 1.09002 * 109.47076 * 300.00101 * 17 15 14 30 30 H 1.09009 * 109.47185 * 59.99778 * 17 15 14 31 31 H 1.08000 * 126.04192 * 0.02562 * 19 18 17 32 32 H 1.08007 * 126.12490 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.59831 * 180.30018 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0640 -1.2264 0.2232 9 6 1.3306 -2.4206 -0.2943 10 6 1.8554 -3.6659 0.1141 11 6 1.1637 -4.8149 -0.1937 12 7 0.0219 -4.7673 -0.8559 13 6 -0.5099 -3.6255 -1.2661 14 7 -1.7158 -3.6401 -1.9667 15 6 -2.2635 -4.8133 -2.3409 16 8 -1.7530 -5.8581 -1.9967 17 6 -3.5103 -4.8268 -3.1873 18 6 -3.9137 -6.2520 -3.4649 19 6 -5.1632 -6.8185 -3.1928 20 6 -5.1278 -8.1130 -3.5854 21 7 -3.8996 -8.3568 -4.0886 22 1 -3.5871 -9.2026 -4.4464 23 7 -3.1573 -7.1716 -4.0071 24 6 0.1138 -2.4161 -1.0028 25 1 -0.4850 0.8401 -0.0004 26 1 2.7859 -3.7161 0.6602 27 1 1.5591 -5.7714 0.1150 28 1 -2.1623 -2.8061 -2.1811 29 1 -4.3151 -4.3178 -2.6568 30 1 -3.3154 -4.3146 -4.1296 31 1 -6.0072 -6.3123 -2.7480 32 1 -5.9375 -8.8238 -3.5095 33 1 -0.3256 -1.4871 -1.3349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531671004.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:11 Heat of formation + Delta-G solvation = 78.531255 kcal Electronic energy + Delta-G solvation = -19477.567855 eV Core-core repulsion = 16312.156160 eV Total energy + Delta-G solvation = -3165.411695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.10958 -39.36405 -37.65448 -34.29471 -33.64715 -32.78339 -30.49417 -29.88447 -29.25954 -27.64213 -25.96760 -22.31505 -21.85443 -21.31863 -20.05048 -19.17507 -18.09733 -17.58741 -16.76531 -15.69220 -15.21555 -15.02086 -14.40551 -14.14709 -13.97250 -13.82396 -13.51675 -13.22757 -12.74831 -12.68972 -12.58099 -12.34832 -11.73065 -11.38230 -11.16695 -10.87793 -10.52283 -10.27150 -10.09353 -9.66977 -9.43520 -9.33114 -9.17698 -8.68410 -7.97393 -7.65296 -6.97522 -6.72648 -4.59869 1.97376 2.63717 2.78248 2.83091 2.93729 3.01526 3.04674 3.26100 3.55568 3.82447 3.85856 4.64410 4.70488 4.81860 5.22096 5.27548 5.51321 5.68316 5.74416 5.77683 5.97971 6.08679 6.60868 6.66065 6.73168 6.85786 6.98901 7.18314 7.31242 7.45306 7.52869 7.77373 7.83868 8.01328 8.27315 8.48326 8.75044 8.78348 9.00580 9.76837 10.08257 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038175 B = 0.003801 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.286530 B = 7365.132055 C = 7928.658815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.452 4.452 8 H 0.081 0.919 9 C 0.140 3.860 10 C -0.286 4.286 11 C 0.118 3.882 12 N -0.554 5.554 13 C 0.338 3.662 14 N -0.661 5.661 15 C 0.498 3.502 16 O -0.465 6.465 17 C -0.062 4.062 18 C 0.090 3.910 19 C -0.266 4.266 20 C 0.049 3.951 21 N -0.480 5.480 22 H 0.437 0.563 23 N -0.258 5.258 24 C -0.247 4.247 25 H 0.282 0.718 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.408 0.592 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.147 0.853 32 H 0.173 0.827 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.804 -5.522 -6.792 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.131 3.869 10 C -0.310 4.310 11 C -0.036 4.036 12 N -0.273 5.273 13 C 0.113 3.887 14 N -0.307 5.307 15 C 0.281 3.719 16 O -0.333 6.333 17 C -0.105 4.105 18 C -0.078 4.078 19 C -0.296 4.296 20 C -0.098 4.098 21 N -0.188 5.188 22 H 0.280 0.720 23 N -0.081 5.081 24 C -0.272 4.272 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.139 0.861 28 H 0.242 0.758 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.164 0.836 32 H 0.191 0.809 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.011 -7.235 -7.246 14.320 hybrid contribution -0.183 1.713 0.397 1.768 sum -10.194 -5.522 -6.848 13.465 Atomic orbital electron populations 1.69741 1.07633 1.29271 1.34942 1.25967 0.94833 1.01500 0.91940 0.86270 0.80054 0.79778 0.80064 1.18760 1.20234 1.18919 1.19575 0.96863 0.90423 1.41445 0.90121 1.17573 0.90430 0.92204 0.86657 1.21874 1.03975 0.93910 1.11281 1.21742 0.90583 0.96650 0.94671 1.67222 1.14056 1.27197 1.18841 1.18224 0.86304 0.90812 0.93361 1.43421 1.22387 1.08989 1.55930 1.20360 0.85589 0.84410 0.81588 1.90812 1.60471 1.30806 1.51249 1.20092 0.97575 0.91334 1.01452 1.21586 0.92354 0.95219 0.98613 1.21384 0.99479 0.94858 1.13872 1.22504 0.89684 0.98002 0.99581 1.46399 1.09852 1.12021 1.50520 0.71983 1.77471 1.17409 0.91002 1.22239 1.21754 1.00905 0.95834 1.08729 0.90733 0.88117 0.86075 0.75759 0.87191 0.87477 0.83552 0.80938 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.29 10.59 55.55 0.59 -18.70 16 2 C 0.08 1.83 5.28 -17.34 -0.09 1.74 16 3 Si 0.91 17.93 29.58 -169.99 -5.03 12.90 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.45 -11.71 9.14 -37.65 -0.34 -12.06 16 8 H 0.08 2.00 7.88 -52.49 -0.41 1.59 16 9 C 0.14 3.73 5.64 -106.55 -0.60 3.13 16 10 C -0.29 -7.21 9.90 -38.70 -0.38 -7.60 16 11 C 0.12 2.94 11.15 -17.68 -0.20 2.74 16 12 N -0.55 -14.67 7.86 -12.52 -0.10 -14.76 16 13 C 0.34 8.39 7.41 -154.70 -1.15 7.25 16 14 N -0.66 -13.14 5.39 -11.49 -0.06 -13.20 16 15 C 0.50 9.70 7.78 -10.98 -0.09 9.61 16 16 O -0.46 -11.29 13.83 5.56 0.08 -11.21 16 17 C -0.06 -0.85 6.28 -29.03 -0.18 -1.03 16 18 C 0.09 1.36 6.01 -82.41 -0.50 0.87 16 19 C -0.27 -3.20 10.72 -40.01 -0.43 -3.63 16 20 C 0.05 0.50 11.99 -17.22 -0.21 0.29 16 21 N -0.48 -5.78 7.36 30.45 0.22 -5.56 16 22 H 0.44 3.75 8.96 -182.60 -1.64 2.11 16 23 N -0.26 -4.31 12.06 33.67 0.41 -3.91 16 24 C -0.25 -6.35 8.66 -38.48 -0.33 -6.68 16 25 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 26 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 27 H 0.12 2.67 8.06 -52.48 -0.42 2.24 16 28 H 0.41 6.47 8.70 -40.82 -0.36 6.12 16 29 H 0.11 1.12 8.12 -51.93 -0.42 0.69 16 30 H 0.11 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.17 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.14 3.45 5.88 -52.49 -0.31 3.15 16 LS Contribution 296.17 15.07 4.46 4.46 Total: -1.00 -35.44 296.17 -8.31 -43.75 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -4.38 Total: 11.59 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -4.50 Total: -5.36 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 1.06 Total: -56.13 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.44 -8.31 -43.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531671004.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.285 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds