Wall clock time and date at job start Mon Mar 30 2020 00:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86806 * 120.00234 * 2 1 4 4 H 1.48500 * 109.46896 * 240.00183 * 3 2 1 5 5 H 1.48495 * 109.46850 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46950 * 119.99959 * 3 2 1 7 7 C 1.40033 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00388 * 193.84411 * 7 2 1 9 9 C 1.41552 * 119.99470 * 13.83713 * 7 2 1 10 10 C 1.41174 * 120.99155 * 201.18063 * 9 7 2 11 11 C 1.37597 * 119.01068 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10888 * 359.71562 * 11 10 9 13 13 C 1.32469 * 122.23167 * 0.57960 * 12 11 10 14 14 N 1.39468 * 119.58036 * 179.70555 * 13 12 11 15 15 C 1.34778 * 119.99624 * 353.26149 * 14 13 12 16 16 O 1.21272 * 120.00331 * 4.63230 * 15 14 13 17 17 C 1.50700 * 119.99797 * 184.63547 * 15 14 13 18 18 C 1.50703 * 109.47329 * 179.97438 * 17 15 14 19 19 C 1.39868 * 125.89649 * 124.99717 * 18 17 15 20 20 C 1.35317 * 107.91680 * 180.02562 * 19 18 17 21 21 N 1.34949 * 107.74724 * 359.97438 * 20 19 18 22 22 H 0.97003 * 126.03471 * 179.97438 * 21 20 19 23 23 N 1.30833 * 125.89547 * 304.69673 * 18 17 15 24 24 C 1.38603 * 120.83837 * 359.42150 * 13 12 11 25 25 H 0.97007 * 119.99763 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.49679 * 0.04166 * 10 9 7 27 27 H 1.08004 * 119.44019 * 179.97438 * 11 10 9 28 28 H 0.96996 * 120.00269 * 172.99063 * 14 13 12 29 29 H 1.09002 * 109.47076 * 300.00101 * 17 15 14 30 30 H 1.09009 * 109.47185 * 59.99778 * 17 15 14 31 31 H 1.08000 * 126.04192 * 0.02562 * 19 18 17 32 32 H 1.08007 * 126.12490 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.59831 * 180.30018 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0640 -1.2264 0.2232 9 6 1.3306 -2.4206 -0.2943 10 6 1.8554 -3.6659 0.1141 11 6 1.1637 -4.8149 -0.1937 12 7 0.0219 -4.7673 -0.8559 13 6 -0.5099 -3.6255 -1.2661 14 7 -1.7158 -3.6401 -1.9667 15 6 -2.2635 -4.8133 -2.3409 16 8 -1.7530 -5.8581 -1.9967 17 6 -3.5103 -4.8268 -3.1873 18 6 -3.9137 -6.2520 -3.4649 19 6 -5.1632 -6.8185 -3.1928 20 6 -5.1278 -8.1130 -3.5854 21 7 -3.8996 -8.3568 -4.0886 22 1 -3.5871 -9.2026 -4.4464 23 7 -3.1573 -7.1716 -4.0071 24 6 0.1138 -2.4161 -1.0028 25 1 -0.4850 0.8401 -0.0004 26 1 2.7859 -3.7161 0.6602 27 1 1.5591 -5.7714 0.1150 28 1 -2.1623 -2.8061 -2.1811 29 1 -4.3151 -4.3178 -2.6568 30 1 -3.3154 -4.3146 -4.1296 31 1 -6.0072 -6.3123 -2.7480 32 1 -5.9375 -8.8238 -3.5095 33 1 -0.3256 -1.4871 -1.3349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531671004.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:11 Heat of formation + Delta-G solvation = 53.491778 kcal Electronic energy + Delta-G solvation = -19478.653648 eV Core-core repulsion = 16312.156160 eV Total energy + Delta-G solvation = -3166.497488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.07110 -41.03605 -39.42741 -36.12106 -35.41920 -33.87301 -32.41878 -30.84136 -30.76641 -29.04725 -27.90126 -23.92819 -23.69663 -22.39185 -21.53535 -20.45241 -19.43289 -18.94712 -18.32858 -17.40985 -16.96934 -16.37857 -16.02280 -15.78186 -15.43962 -15.23885 -14.69457 -14.36950 -14.33820 -14.31971 -14.15223 -13.57697 -13.17737 -12.88995 -12.86118 -12.66634 -12.03059 -11.91593 -11.50758 -11.44644 -11.14162 -10.93948 -10.34044 -9.94175 -9.60496 -9.52027 -8.83729 -8.57417 -6.56356 0.78474 1.02846 1.07364 1.42663 1.53775 1.59515 1.78617 1.96455 2.11456 2.21554 2.39172 2.83439 3.64230 3.77205 3.85554 4.08457 4.31637 4.40505 4.56621 4.75856 4.82051 4.90106 4.91773 4.94608 5.13163 5.15748 5.27049 5.51026 5.68292 5.73749 5.94405 6.18596 6.51639 6.56760 6.66381 6.81890 6.82924 6.84990 7.41018 7.89454 8.27779 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038175 B = 0.003801 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.286530 B = 7365.132055 C = 7928.658815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.038 3.962 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.482 4.482 8 H 0.082 0.918 9 C 0.110 3.890 10 C -0.302 4.302 11 C 0.110 3.890 12 N -0.582 5.582 13 C 0.333 3.667 14 N -0.652 5.652 15 C 0.493 3.507 16 O -0.517 6.517 17 C -0.049 4.049 18 C 0.068 3.932 19 C -0.285 4.285 20 C 0.067 3.933 21 N -0.479 5.479 22 H 0.448 0.552 23 N -0.323 5.323 24 C -0.264 4.264 25 H 0.294 0.706 26 H 0.114 0.886 27 H 0.144 0.856 28 H 0.425 0.575 29 H 0.150 0.850 30 H 0.131 0.869 31 H 0.172 0.828 32 H 0.222 0.778 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.483 -4.607 -7.174 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.512 4.512 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.326 4.326 11 C -0.044 4.044 12 N -0.302 5.302 13 C 0.107 3.893 14 N -0.301 5.301 15 C 0.280 3.720 16 O -0.389 6.389 17 C -0.091 4.091 18 C -0.100 4.100 19 C -0.314 4.314 20 C -0.081 4.081 21 N -0.188 5.188 22 H 0.293 0.707 23 N -0.147 5.147 24 C -0.290 4.290 25 H 0.105 0.895 26 H 0.132 0.868 27 H 0.161 0.839 28 H 0.263 0.737 29 H 0.168 0.832 30 H 0.149 0.851 31 H 0.190 0.810 32 H 0.239 0.761 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.727 -6.313 -7.648 15.358 hybrid contribution 0.269 1.359 0.520 1.480 sum -11.458 -4.954 -7.128 14.375 Atomic orbital electron populations 1.69761 1.08911 1.31004 1.33726 1.26838 0.95698 1.04557 0.90819 0.85127 0.78720 0.75126 0.79984 1.18543 1.18687 1.18570 1.19879 0.97246 0.91399 1.42696 0.89956 1.18019 0.91313 0.93202 0.87290 1.22049 1.04735 0.93781 1.11989 1.22155 0.90386 0.97652 0.94176 1.67347 1.14885 1.28019 1.19978 1.18518 0.87601 0.90213 0.92952 1.43473 1.21010 1.10514 1.55079 1.21424 0.86577 0.83139 0.80905 1.90781 1.62343 1.32486 1.53265 1.20159 0.95326 0.91967 1.01616 1.21954 0.93629 0.95504 0.98864 1.21793 0.99245 0.95706 1.14618 1.23300 0.89610 0.98349 0.96810 1.46453 1.10338 1.11600 1.50412 0.70678 1.77362 1.19816 0.92921 1.24598 1.21765 1.01334 0.96122 1.09759 0.89531 0.86813 0.83854 0.73688 0.83190 0.85088 0.81017 0.76129 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.11 10.59 21.84 0.23 -38.88 16 2 C 0.04 1.81 5.28 85.29 0.45 2.26 16 3 Si 0.99 35.80 29.58 68.60 2.03 37.83 16 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.48 -25.28 9.14 23.52 0.22 -25.07 16 8 H 0.08 4.13 7.88 -2.91 -0.02 4.11 16 9 C 0.11 6.02 5.64 -21.11 -0.12 5.90 16 10 C -0.30 -15.59 9.90 22.84 0.23 -15.37 16 11 C 0.11 5.62 11.15 84.50 0.94 6.57 16 12 N -0.58 -31.62 7.86 -193.52 -1.52 -33.14 16 13 C 0.33 16.91 7.41 132.75 0.98 17.89 16 14 N -0.65 -25.98 5.39 -308.66 -1.66 -27.64 16 15 C 0.49 19.18 7.78 87.66 0.68 19.86 16 16 O -0.52 -25.66 13.83 -3.01 -0.04 -25.70 16 17 C -0.05 -1.26 6.28 29.10 0.18 -1.08 16 18 C 0.07 1.96 6.01 43.10 0.26 2.21 16 19 C -0.28 -6.11 10.72 21.99 0.24 -5.87 16 20 C 0.07 1.16 11.99 83.54 1.00 2.16 16 21 N -0.48 -10.96 7.36 -57.58 -0.42 -11.38 16 22 H 0.45 7.28 8.96 -213.32 -1.91 5.36 16 23 N -0.32 -10.74 12.06 -47.39 -0.57 -11.31 16 24 C -0.26 -13.91 8.66 22.98 0.20 -13.71 16 25 H 0.29 12.59 8.29 -92.70 -0.77 11.82 16 26 H 0.11 5.37 8.06 -2.91 -0.02 5.35 16 27 H 0.14 6.42 8.06 -2.91 -0.02 6.39 16 28 H 0.42 13.23 8.70 -92.71 -0.81 12.43 16 29 H 0.15 2.56 8.12 -2.39 -0.02 2.54 16 30 H 0.13 2.70 8.14 -2.38 -0.02 2.68 16 31 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.22 1.44 8.06 -2.91 -0.02 1.42 16 33 H 0.14 7.01 5.88 -2.91 -0.02 6.99 16 Total: -1.00 -79.83 296.17 1.76 -78.07 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -1.54 Total: 36.39 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.26 Total: -4.23 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -3.95 Total: -122.36 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.04 Total: -25.70 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Total: -79.83 1.76 -78.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531671004.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.558 kcal (2) G-P(sol) polarization free energy of solvation -79.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds