Wall clock time and date at job start Mon Mar 30 2020 01:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30447 * 125.98442 * 2 1 4 4 N 1.39939 * 108.90068 * 180.17481 * 3 2 1 5 5 H 0.96995 * 125.75392 * 179.84995 * 4 3 2 6 6 C 1.34269 * 108.49197 * 359.57594 * 4 3 2 7 7 C 1.38065 * 107.41106 * 0.25003 * 6 4 3 8 8 C 1.47399 * 126.41328 * 179.97438 * 7 6 4 9 9 O 1.21596 * 119.99835 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99947 * 0.02562 * 8 7 6 11 11 C 1.39401 * 120.00177 * 175.13107 * 10 8 7 12 12 C 1.38614 * 119.58378 * 184.94188 * 11 10 8 13 13 C 1.40798 * 118.79381 * 179.77822 * 12 11 10 14 14 C 1.41542 * 120.99824 * 180.24026 * 13 12 11 15 15 H 1.08000 * 120.00237 * 203.93242 * 14 13 12 16 16 C 1.40035 * 120.00045 * 23.93189 * 14 13 12 17 17 N 1.30743 * 119.99617 * 16.73586 * 16 14 13 18 18 Si 1.86799 * 120.00200 * 196.73259 * 16 14 13 19 19 H 1.48497 * 109.47126 * 90.00076 * 18 16 14 20 20 H 1.48502 * 109.46965 * 210.00265 * 18 16 14 21 21 H 1.48499 * 109.47074 * 330.00019 * 18 16 14 22 22 C 1.41187 * 118.00848 * 0.48601 * 13 12 11 23 23 C 1.37584 * 119.01856 * 359.75576 * 22 13 12 24 24 N 1.32091 * 121.10814 * 359.97438 * 23 22 13 25 25 H 1.09003 * 109.47325 * 270.27721 * 1 2 3 26 26 H 1.09002 * 109.47294 * 30.27865 * 1 2 3 27 27 H 1.08998 * 109.47310 * 150.27709 * 1 2 3 28 28 H 1.07993 * 126.29113 * 180.26100 * 6 4 3 29 29 H 0.97005 * 120.00272 * 355.12739 * 10 8 7 30 30 H 1.08004 * 120.60273 * 359.97438 * 12 11 10 31 31 H 0.96995 * 119.99816 * 180.02562 * 17 16 14 32 32 H 1.08000 * 120.48799 * 179.77215 * 22 13 12 33 33 H 1.07992 * 119.44587 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0555 0.0000 4 7 3.6111 0.6445 -0.0040 5 1 4.3840 1.2304 -0.0070 6 6 3.6441 -0.6978 0.0029 7 6 2.3373 -1.1432 0.0056 8 6 1.8918 -2.5482 0.0124 9 8 0.7042 -2.8095 0.0137 10 7 2.8007 -3.5434 0.0173 11 6 2.3826 -4.8687 0.1262 12 6 3.3271 -5.8776 0.2340 13 6 2.8863 -7.2099 0.3479 14 6 3.8100 -8.2758 0.4656 15 1 3.5229 -9.2743 0.1707 16 6 5.0963 -8.0357 0.9643 17 7 5.3483 -6.9322 1.6185 18 14 6.4521 -9.2922 0.6950 19 1 7.1587 -8.9931 -0.5764 20 1 7.4157 -9.2302 1.8233 21 1 5.8598 -10.6521 0.6240 22 6 1.4952 -7.4514 0.3359 23 6 0.6337 -6.3849 0.2196 24 7 1.0877 -5.1485 0.1204 25 1 -0.3634 0.0050 1.0277 26 1 -0.3634 0.8875 -0.5182 27 1 -0.3634 -0.8924 -0.5095 28 1 4.5300 -1.3154 0.0060 29 1 3.7458 -3.3374 -0.0551 30 1 4.3819 -5.6455 0.2338 31 1 6.2393 -6.7657 1.9637 32 1 1.1132 -8.4582 0.4170 33 1 -0.4316 -6.5617 0.2101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531671324.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:14 Heat of formation + Delta-G solvation = 71.786268 kcal Electronic energy + Delta-G solvation = -19713.535971 eV Core-core repulsion = 16547.831792 eV Total energy + Delta-G solvation = -3165.704180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35940 -39.22511 -37.53279 -34.35322 -33.77381 -32.85216 -30.74153 -30.35342 -28.39270 -27.76819 -25.99385 -23.40302 -21.94316 -21.45837 -19.99987 -19.43002 -18.37633 -17.54133 -16.33800 -15.60628 -15.24157 -15.16718 -14.36329 -14.21376 -14.02047 -13.98173 -13.47373 -12.88973 -12.78896 -12.70640 -12.61122 -12.21839 -11.93509 -11.45670 -11.24947 -10.93660 -10.87669 -10.28471 -10.14189 -9.72910 -9.53260 -9.36899 -9.31182 -8.75807 -8.00201 -7.70290 -7.01471 -6.81453 -4.62153 1.52319 2.20925 2.65673 2.75375 2.81611 3.00010 3.03510 3.25545 3.74211 3.83245 3.98098 4.53821 4.64028 4.67501 5.17112 5.39525 5.48611 5.69469 5.80519 5.88953 6.07017 6.10681 6.54785 6.60955 6.66996 6.82040 6.94581 7.03352 7.09681 7.39826 7.47711 7.50610 7.80067 7.96218 8.23122 8.43475 8.71031 8.74064 8.96804 9.71252 10.04850 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.004606 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.746976 B = 6077.334535 C = 7091.368808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.134 3.866 3 N -0.306 5.306 4 N -0.465 5.465 5 H 0.442 0.558 6 C 0.099 3.901 7 C -0.278 4.278 8 C 0.576 3.424 9 O -0.480 6.480 10 N -0.656 5.656 11 C 0.341 3.659 12 C -0.246 4.246 13 C 0.144 3.856 14 C -0.456 4.456 15 H 0.082 0.918 16 C 0.079 3.921 17 N -0.789 5.789 18 Si 0.911 3.089 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.285 4.285 23 C 0.120 3.880 24 N -0.552 5.552 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.186 0.814 29 H 0.403 0.597 30 H 0.127 0.873 31 H 0.281 0.719 32 H 0.102 0.898 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 10.231 -2.252 10.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 N -0.130 5.130 4 N -0.170 5.170 5 H 0.286 0.714 6 C -0.053 4.053 7 C -0.293 4.293 8 C 0.362 3.638 9 O -0.351 6.351 10 N -0.301 5.301 11 C 0.116 3.884 12 C -0.271 4.271 13 C 0.136 3.864 14 C -0.488 4.488 15 H 0.100 0.900 16 C -0.140 4.140 17 N -0.414 5.414 18 Si 0.735 3.265 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.185 1.185 22 C -0.309 4.309 23 C -0.035 4.035 24 N -0.271 5.271 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.203 0.797 29 H 0.237 0.763 30 H 0.145 0.855 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.263 12.199 -2.182 12.457 hybrid contribution 2.549 -1.735 0.119 3.086 sum 3.812 10.464 -2.063 11.326 Atomic orbital electron populations 1.20363 0.85615 1.04094 1.03633 1.22488 0.97419 0.88658 0.94780 1.77117 0.86275 1.22514 1.27071 1.46041 1.07738 1.05420 1.57790 0.71410 1.23209 0.99208 0.85585 0.97342 1.20549 0.92048 0.95094 1.21591 1.17303 0.86219 0.82920 0.77405 1.90816 1.15447 1.83174 1.45654 1.43253 1.09636 1.04521 1.72697 1.18147 0.90510 0.82767 0.96993 1.21519 0.98723 0.92309 1.14550 1.17554 0.91216 0.92144 0.85519 1.19591 0.95722 0.95859 1.37579 0.89966 1.25947 0.99750 0.96151 0.92154 1.69787 1.22625 1.24719 1.24295 0.86264 0.79952 0.81433 0.78832 1.19191 1.20253 1.18468 1.21897 0.94347 0.98448 1.16226 1.21774 0.98093 0.87579 0.96022 1.67244 1.13721 1.22213 1.23966 0.90180 0.91269 0.88264 0.79703 0.76257 0.85545 0.90788 0.88024 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 9.92 36.00 0.36 -0.70 16 2 C 0.13 2.01 7.26 -82.02 -0.60 1.42 16 3 N -0.31 -4.21 12.63 33.89 0.43 -3.78 16 4 N -0.47 -4.78 7.29 30.85 0.22 -4.56 16 5 H 0.44 2.74 8.96 -182.72 -1.64 1.10 16 6 C 0.10 1.09 11.52 -16.55 -0.19 0.90 16 7 C -0.28 -4.27 6.13 -105.07 -0.64 -4.92 16 8 C 0.58 11.18 7.77 -12.53 -0.10 11.08 16 9 O -0.48 -10.96 13.17 5.28 0.07 -10.89 16 10 N -0.66 -12.75 5.37 -12.48 -0.07 -12.82 16 11 C 0.34 8.18 7.41 -154.76 -1.15 7.03 16 12 C -0.25 -6.12 8.62 -38.48 -0.33 -6.46 16 13 C 0.14 3.74 5.60 -106.55 -0.60 3.15 16 14 C -0.46 -11.59 9.12 -37.65 -0.34 -11.93 16 15 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 16 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 17 N -0.79 -19.05 10.92 55.55 0.61 -18.44 16 18 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 16 19 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 20 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 C -0.29 -6.95 9.90 -38.70 -0.38 -7.34 16 23 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 24 N -0.55 -14.01 7.85 -12.54 -0.10 -14.10 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.51 6.55 -51.93 -0.34 1.17 16 28 H 0.19 1.33 7.47 -52.49 -0.39 0.94 16 29 H 0.40 6.24 7.63 -40.82 -0.31 5.92 16 30 H 0.13 3.10 6.20 -52.48 -0.33 2.77 16 31 H 0.28 6.11 8.29 -40.82 -0.34 5.78 16 32 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.12 2.57 8.06 -52.49 -0.42 2.14 16 LS Contribution 293.16 15.07 4.42 4.42 Total: -1.00 -32.91 293.16 -7.96 -40.86 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.25 Total: 10.08 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -4.26 Total: -3.32 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 1.09 Total: -53.70 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.91 -7.96 -40.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531671324.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.650 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds