Wall clock time and date at job start Mon Mar 30 2020 01:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30447 * 125.98442 * 2 1 4 4 N 1.39939 * 108.90068 * 180.17481 * 3 2 1 5 5 H 0.96995 * 125.75392 * 179.84995 * 4 3 2 6 6 C 1.34269 * 108.49197 * 359.57594 * 4 3 2 7 7 C 1.38065 * 107.41106 * 0.25003 * 6 4 3 8 8 C 1.47399 * 126.41328 * 179.97438 * 7 6 4 9 9 O 1.21596 * 119.99835 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99947 * 0.02562 * 8 7 6 11 11 C 1.39401 * 120.00177 * 175.13107 * 10 8 7 12 12 C 1.38614 * 119.58378 * 184.94188 * 11 10 8 13 13 C 1.40798 * 118.79381 * 179.77822 * 12 11 10 14 14 C 1.41542 * 120.99824 * 180.24026 * 13 12 11 15 15 H 1.08000 * 120.00237 * 203.93242 * 14 13 12 16 16 C 1.40035 * 120.00045 * 23.93189 * 14 13 12 17 17 N 1.30743 * 119.99617 * 16.73586 * 16 14 13 18 18 Si 1.86799 * 120.00200 * 196.73259 * 16 14 13 19 19 H 1.48497 * 109.47126 * 90.00076 * 18 16 14 20 20 H 1.48502 * 109.46965 * 210.00265 * 18 16 14 21 21 H 1.48499 * 109.47074 * 330.00019 * 18 16 14 22 22 C 1.41187 * 118.00848 * 0.48601 * 13 12 11 23 23 C 1.37584 * 119.01856 * 359.75576 * 22 13 12 24 24 N 1.32091 * 121.10814 * 359.97438 * 23 22 13 25 25 H 1.09003 * 109.47325 * 270.27721 * 1 2 3 26 26 H 1.09002 * 109.47294 * 30.27865 * 1 2 3 27 27 H 1.08998 * 109.47310 * 150.27709 * 1 2 3 28 28 H 1.07993 * 126.29113 * 180.26100 * 6 4 3 29 29 H 0.97005 * 120.00272 * 355.12739 * 10 8 7 30 30 H 1.08004 * 120.60273 * 359.97438 * 12 11 10 31 31 H 0.96995 * 119.99816 * 180.02562 * 17 16 14 32 32 H 1.08000 * 120.48799 * 179.77215 * 22 13 12 33 33 H 1.07992 * 119.44587 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0555 0.0000 4 7 3.6111 0.6445 -0.0040 5 1 4.3840 1.2304 -0.0070 6 6 3.6441 -0.6978 0.0029 7 6 2.3373 -1.1432 0.0056 8 6 1.8918 -2.5482 0.0124 9 8 0.7042 -2.8095 0.0137 10 7 2.8007 -3.5434 0.0173 11 6 2.3826 -4.8687 0.1262 12 6 3.3271 -5.8776 0.2340 13 6 2.8863 -7.2099 0.3479 14 6 3.8100 -8.2758 0.4656 15 1 3.5229 -9.2743 0.1707 16 6 5.0963 -8.0357 0.9643 17 7 5.3483 -6.9322 1.6185 18 14 6.4521 -9.2922 0.6950 19 1 7.1587 -8.9931 -0.5764 20 1 7.4157 -9.2302 1.8233 21 1 5.8598 -10.6521 0.6240 22 6 1.4952 -7.4514 0.3359 23 6 0.6337 -6.3849 0.2196 24 7 1.0877 -5.1485 0.1204 25 1 -0.3634 0.0050 1.0277 26 1 -0.3634 0.8875 -0.5182 27 1 -0.3634 -0.8924 -0.5095 28 1 4.5300 -1.3154 0.0060 29 1 3.7458 -3.3374 -0.0551 30 1 4.3819 -5.6455 0.2338 31 1 6.2393 -6.7657 1.9637 32 1 1.1132 -8.4582 0.4170 33 1 -0.4316 -6.5617 0.2101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531671324.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:13 Heat of formation + Delta-G solvation = 49.460430 kcal Electronic energy + Delta-G solvation = -19714.504092 eV Core-core repulsion = 16547.831792 eV Total energy + Delta-G solvation = -3166.672301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.42836 -40.87581 -39.22618 -36.09780 -35.47363 -33.92089 -32.47717 -31.76534 -29.95496 -28.89224 -27.87068 -24.76647 -23.78599 -22.90178 -21.36846 -20.70935 -19.61286 -19.24920 -17.76673 -17.25565 -16.85240 -16.43771 -16.03284 -15.74108 -15.48468 -15.38267 -14.94821 -14.55368 -14.31399 -14.03605 -13.89277 -13.72737 -13.15559 -12.97045 -12.90796 -12.63604 -12.03321 -11.98427 -11.87839 -11.44513 -11.11168 -10.92535 -10.51984 -9.92705 -9.85716 -9.54042 -8.80597 -8.60658 -6.53243 0.44687 0.86588 1.03495 1.19853 1.43687 1.55986 1.61454 1.79129 2.22330 2.26337 2.51668 2.87100 3.45672 3.76823 3.80184 3.98693 4.21930 4.41115 4.49899 4.76919 4.80141 4.88572 4.90175 4.98563 5.00425 5.13748 5.25737 5.46095 5.52668 5.69947 5.94543 6.19723 6.25471 6.46759 6.56635 6.67844 6.83388 6.86703 7.41734 7.90203 8.29108 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.004606 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.746976 B = 6077.334535 C = 7091.368808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.121 3.879 3 N -0.320 5.320 4 N -0.443 5.443 5 H 0.463 0.537 6 C 0.136 3.864 7 C -0.318 4.318 8 C 0.575 3.425 9 O -0.523 6.523 10 N -0.647 5.647 11 C 0.338 3.662 12 C -0.261 4.261 13 C 0.115 3.885 14 C -0.487 4.487 15 H 0.082 0.918 16 C 0.043 3.957 17 N -0.810 5.810 18 Si 0.986 3.014 19 H -0.259 1.259 20 H -0.267 1.267 21 H -0.261 1.261 22 C -0.301 4.301 23 C 0.114 3.886 24 N -0.578 5.578 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.230 0.770 29 H 0.420 0.580 30 H 0.127 0.873 31 H 0.293 0.707 32 H 0.114 0.886 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 10.950 -2.279 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.046 4.046 3 N -0.144 5.144 4 N -0.149 5.149 5 H 0.311 0.689 6 C -0.018 4.018 7 C -0.333 4.333 8 C 0.364 3.636 9 O -0.398 6.398 10 N -0.294 5.294 11 C 0.112 3.888 12 C -0.287 4.287 13 C 0.107 3.893 14 C -0.517 4.517 15 H 0.100 0.900 16 C -0.175 4.175 17 N -0.436 5.436 18 Si 0.806 3.194 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.325 4.325 23 C -0.040 4.040 24 N -0.298 5.298 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.246 0.754 29 H 0.258 0.742 30 H 0.145 0.855 31 H 0.104 0.896 32 H 0.132 0.868 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.681 12.988 -2.209 13.679 hybrid contribution 1.854 -1.867 0.154 2.636 sum 5.535 11.121 -2.055 12.591 Atomic orbital electron populations 1.20309 0.85532 1.03881 1.03738 1.22655 0.98028 0.88886 0.95037 1.77081 0.87553 1.22206 1.27548 1.46084 1.07518 1.05645 1.55642 0.68855 1.23706 0.98879 0.85927 0.93331 1.20270 0.94239 0.92808 1.25961 1.17839 0.85606 0.84219 0.75963 1.90785 1.17250 1.84066 1.47655 1.43205 1.10828 1.03006 1.72373 1.18399 0.90071 0.84513 0.95844 1.21514 0.98800 0.92420 1.15921 1.17986 0.92189 0.93078 0.86086 1.19867 0.97142 0.95849 1.38848 0.89983 1.26772 1.01323 0.98252 0.91124 1.69806 1.23847 1.26050 1.23878 0.85139 0.76639 0.78459 0.79112 1.18395 1.19138 1.18481 1.22077 0.94173 0.99262 1.16962 1.22208 0.99382 0.87267 0.95122 1.67370 1.14518 1.22820 1.25062 0.89956 0.89275 0.90536 0.75417 0.74189 0.85532 0.89613 0.86820 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.07 9.92 71.23 0.71 -1.36 16 2 C 0.12 3.53 7.26 43.51 0.32 3.84 16 3 N -0.32 -8.12 12.63 -46.68 -0.59 -8.71 16 4 N -0.44 -7.55 7.29 -56.30 -0.41 -7.96 16 5 H 0.46 3.81 8.96 -213.43 -1.91 1.89 16 6 C 0.14 2.56 11.52 84.28 0.97 3.53 16 7 C -0.32 -9.39 6.13 -20.16 -0.12 -9.51 16 8 C 0.58 22.40 7.77 86.66 0.67 23.07 16 9 O -0.52 -24.63 13.17 -4.02 -0.05 -24.69 16 10 N -0.65 -24.99 5.37 -311.66 -1.67 -26.66 16 11 C 0.34 16.44 7.41 132.78 0.98 17.43 16 12 C -0.26 -13.21 8.62 22.99 0.20 -13.01 16 13 C 0.11 6.08 5.60 -21.11 -0.12 5.97 16 14 C -0.49 -24.91 9.12 23.52 0.21 -24.70 16 15 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 16 C 0.04 1.99 5.20 85.29 0.44 2.44 16 17 N -0.81 -38.56 10.92 21.84 0.24 -38.32 16 18 Si 0.99 34.98 29.59 68.60 2.03 37.01 16 19 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 20 H -0.27 -8.96 7.11 99.48 0.71 -8.25 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 22 C -0.30 -14.97 9.90 22.84 0.23 -14.75 16 23 C 0.11 5.54 11.15 84.50 0.94 6.48 16 24 N -0.58 -29.90 7.85 -193.58 -1.52 -31.42 16 25 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 2.43 6.55 -2.39 -0.02 2.42 16 28 H 0.23 2.17 7.47 -2.91 -0.02 2.14 16 29 H 0.42 12.43 7.63 -92.70 -0.71 11.72 16 30 H 0.13 6.24 6.20 -2.91 -0.02 6.23 16 31 H 0.29 12.32 8.29 -92.71 -0.77 11.56 16 32 H 0.11 5.18 8.06 -2.91 -0.02 5.16 16 33 H 0.15 6.20 8.06 -2.91 -0.02 6.18 16 Total: -1.00 -72.86 293.16 2.02 -70.84 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -1.43 Total: 30.49 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 5.43 Total: -0.57 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -3.95 Total: -113.08 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.05 Total: -24.69 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Total: -72.86 2.02 -70.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531671324.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.297 kcal (2) G-P(sol) polarization free energy of solvation -72.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds