Wall clock time and date at job start Mon Mar 30 2020 01:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30855 * 125.41599 * 2 1 4 4 C 1.33316 * 109.68858 * 179.74610 * 3 2 1 5 5 C 1.36690 * 107.78280 * 0.43791 * 4 3 2 6 6 C 1.46715 * 126.84702 * 179.83936 * 5 4 3 7 7 O 1.21686 * 119.99852 * 359.68570 * 6 5 4 8 8 N 1.34773 * 120.00025 * 179.68584 * 6 5 4 9 9 C 1.39358 * 120.00005 * 184.48835 * 8 6 5 10 10 C 1.38630 * 119.58418 * 185.35363 * 9 8 6 11 11 C 1.40802 * 118.79462 * 180.02562 * 10 9 8 12 12 C 1.41542 * 120.99594 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00049 * 151.92502 * 12 11 10 14 14 C 1.40035 * 120.00079 * 331.92981 * 12 11 10 15 15 N 1.30746 * 119.99978 * 162.25108 * 14 12 11 16 16 Si 1.86800 * 119.99740 * 342.24722 * 14 12 11 17 17 H 1.48498 * 109.47130 * 90.31815 * 16 14 12 18 18 H 1.48505 * 109.47092 * 210.31483 * 16 14 12 19 19 H 1.48500 * 109.47188 * 330.31322 * 16 14 12 20 20 C 1.41177 * 118.01010 * 0.02562 * 11 10 9 21 21 C 1.37583 * 119.02091 * 359.97438 * 20 11 10 22 22 N 1.32086 * 121.11625 * 359.97438 * 21 20 11 23 23 N 1.34507 * 125.41377 * 180.02562 * 2 1 3 24 24 H 0.96996 * 126.47510 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.46918 * 269.97832 * 1 2 3 26 26 H 1.09002 * 109.47278 * 29.97957 * 1 2 3 27 27 H 1.09004 * 109.46839 * 149.97788 * 1 2 3 28 28 H 1.07998 * 126.10465 * 180.27487 * 4 3 2 29 29 H 0.97004 * 120.00215 * 4.48446 * 8 6 5 30 30 H 1.08000 * 120.60427 * 0.04098 * 10 9 8 31 31 H 0.97000 * 119.99723 * 179.97438 * 15 14 12 32 32 H 1.07995 * 120.49066 * 179.97438 * 20 11 10 33 33 H 1.08002 * 119.44449 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7051 0.0056 5 6 3.5977 -0.6609 -0.0007 6 6 4.8025 -1.4981 -0.0012 7 8 5.9035 -0.9797 -0.0013 8 7 4.6900 -2.8411 -0.0014 9 6 5.8308 -3.6359 0.0926 10 6 5.7168 -5.0129 -0.0203 11 6 6.8801 -5.8001 0.0778 12 6 6.8174 -7.2100 -0.0302 13 1 7.6684 -7.7615 -0.4018 14 6 5.6520 -7.8898 0.3448 15 7 5.4499 -9.1152 -0.0637 16 14 4.3862 -7.0458 1.4287 17 1 3.3954 -6.3412 0.5760 18 1 3.6907 -8.0609 2.2600 19 1 5.0662 -6.0644 2.3117 20 6 8.1108 -5.1411 0.2881 21 6 8.1247 -3.7689 0.3875 22 7 7.0107 -3.0660 0.2889 23 7 2.2865 -1.0962 -0.0005 24 1 1.9850 -2.0181 -0.0013 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 4.3976 1.3725 0.0111 29 1 3.8149 -3.2545 -0.0669 30 1 4.7532 -5.4735 -0.1809 31 1 4.6428 -9.5862 0.1964 32 1 9.0277 -5.7057 0.3699 33 1 9.0624 -3.2577 0.5479 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531674329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:12 Heat of formation + Delta-G solvation = 58.815597 kcal Electronic energy + Delta-G solvation = -19717.792154 eV Core-core repulsion = 16551.525524 eV Total energy + Delta-G solvation = -3166.266630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.33197 -39.71721 -37.96043 -34.63906 -33.96718 -32.79318 -32.06424 -31.39438 -29.19179 -27.40648 -26.10594 -23.50910 -22.50338 -21.56474 -20.64568 -20.05783 -18.71176 -17.85568 -16.54466 -15.83367 -15.80085 -15.58983 -14.73327 -14.52205 -14.32827 -14.21229 -13.87851 -13.47863 -13.16668 -13.07945 -13.02635 -12.74140 -12.57271 -11.75643 -11.07355 -10.93132 -10.83872 -10.45880 -10.32985 -10.17542 -10.07880 -9.78321 -9.47912 -8.61110 -8.34476 -8.01301 -7.39100 -7.17638 -4.83284 1.21465 2.29513 2.52226 2.67854 2.76316 2.87900 3.03016 3.13762 3.22984 3.57034 3.76348 4.14167 4.46597 4.65020 4.84774 5.09964 5.15794 5.30708 5.33788 5.55453 5.64026 5.71969 6.17832 6.21080 6.32410 6.43627 6.47791 6.84397 6.99372 7.01647 7.12285 7.42966 7.58492 7.77564 7.88689 8.10134 8.30786 8.47344 8.55119 9.33140 9.83579 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.005267 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.057659 B = 5314.952722 C = 6446.039175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.232 3.768 3 N -0.496 5.496 4 C 0.067 3.933 5 C -0.081 4.081 6 C 0.581 3.419 7 O -0.458 6.458 8 N -0.662 5.662 9 C 0.369 3.631 10 C -0.325 4.325 11 C 0.128 3.872 12 C -0.436 4.436 13 H 0.097 0.903 14 C 0.086 3.914 15 N -0.795 5.795 16 Si 0.920 3.080 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.248 1.248 20 C -0.270 4.270 21 C 0.130 3.870 22 N -0.556 5.556 23 N -0.554 5.554 24 H 0.421 0.579 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.185 0.815 29 H 0.401 0.599 30 H 0.110 0.890 31 H 0.288 0.712 32 H 0.111 0.889 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.096 9.525 0.981 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.032 4.032 3 N -0.216 5.216 4 C -0.086 4.086 5 C -0.197 4.197 6 C 0.365 3.635 7 O -0.326 6.326 8 N -0.307 5.307 9 C 0.142 3.858 10 C -0.350 4.350 11 C 0.120 3.880 12 C -0.466 4.466 13 H 0.115 0.885 14 C -0.135 4.135 15 N -0.419 5.419 16 Si 0.747 3.253 17 H -0.199 1.199 18 H -0.217 1.217 19 H -0.171 1.171 20 C -0.293 4.293 21 C -0.022 4.022 22 N -0.276 5.276 23 N -0.160 5.160 24 H 0.259 0.741 25 H 0.104 0.896 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.202 0.798 29 H 0.235 0.765 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.588 11.437 1.029 15.620 hybrid contribution -0.993 -2.430 0.279 2.640 sum -11.581 9.007 1.309 14.729 Atomic orbital electron populations 1.20295 0.84312 1.04504 1.04011 1.23446 0.95849 0.81613 1.02293 1.70184 1.02166 1.28171 1.21116 1.22643 0.94675 0.91197 1.00068 1.21440 0.83539 0.96245 1.18500 1.16943 0.87123 0.81354 0.78062 1.90948 1.24916 1.72038 1.44712 1.43362 1.08607 1.05824 1.72893 1.17919 0.86067 0.86740 0.95059 1.21287 1.00036 0.91438 1.22284 1.17666 0.90371 0.93563 0.86439 1.19526 1.00407 0.90137 1.36548 0.88533 1.26207 0.98062 0.94738 0.94519 1.69648 1.26218 1.11784 1.34244 0.86229 0.79662 0.79065 0.80333 1.19851 1.21664 1.17111 1.21926 0.98497 0.94959 1.13958 1.21914 0.94622 0.90958 0.94673 1.67285 0.96843 1.39284 1.24163 1.43303 1.06262 1.10233 1.56172 0.74075 0.89644 0.88694 0.90427 0.79776 0.76519 0.87243 0.90083 0.87045 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.51 36.01 0.38 -0.07 16 2 C 0.23 2.50 8.12 -155.60 -1.26 1.23 16 3 N -0.50 -6.78 11.20 -10.57 -0.12 -6.90 16 4 C 0.07 0.97 11.66 -17.47 -0.20 0.77 16 5 C -0.08 -1.19 7.07 -82.15 -0.58 -1.77 16 6 C 0.58 10.61 7.74 -12.84 -0.10 10.51 16 7 O -0.46 -10.06 15.18 5.20 0.08 -9.99 16 8 N -0.66 -12.05 5.38 -12.67 -0.07 -12.12 16 9 C 0.37 8.31 7.40 -154.78 -1.15 7.16 16 10 C -0.32 -7.53 7.21 -38.47 -0.28 -7.81 16 11 C 0.13 3.14 5.17 -106.55 -0.55 2.59 16 12 C -0.44 -11.20 9.64 -37.65 -0.36 -11.56 16 13 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 14 C 0.09 2.11 5.44 -17.34 -0.09 2.02 16 15 N -0.80 -19.84 13.92 55.55 0.77 -19.07 16 16 Si 0.92 19.37 24.54 -169.99 -4.17 15.19 16 17 H -0.27 -5.26 6.45 56.52 0.36 -4.90 16 18 H -0.29 -5.86 7.11 56.52 0.40 -5.45 16 19 H -0.25 -5.50 7.00 56.52 0.40 -5.11 16 20 C -0.27 -6.16 9.90 -38.71 -0.38 -6.54 16 21 C 0.13 2.88 11.15 -17.68 -0.20 2.68 16 22 N -0.56 -13.25 7.88 -12.54 -0.10 -13.34 16 23 N -0.55 -6.02 6.08 -7.02 -0.04 -6.06 16 24 H 0.42 3.27 8.32 -40.82 -0.34 2.93 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.19 2.47 8.06 -52.49 -0.42 2.04 16 29 H 0.40 5.76 7.95 -40.82 -0.32 5.43 16 30 H 0.11 2.41 4.43 -52.49 -0.23 2.18 16 31 H 0.29 6.46 8.29 -40.82 -0.34 6.12 16 32 H 0.11 2.33 8.06 -52.49 -0.42 1.90 16 33 H 0.13 2.50 8.06 -52.49 -0.42 2.07 16 LS Contribution 291.40 15.07 4.39 4.39 Total: -1.00 -32.20 291.40 -7.07 -39.27 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -3.03 Total: 9.39 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -4.78 Total: -0.77 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.45 Total: -57.50 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.17 Total: 15.19 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.20 -7.07 -39.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531674329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.087 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds