Wall clock time and date at job start Mon Mar 30 2020 01:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30855 * 125.41599 * 2 1 4 4 C 1.33316 * 109.68858 * 179.74610 * 3 2 1 5 5 C 1.36690 * 107.78280 * 0.43791 * 4 3 2 6 6 C 1.46715 * 126.84702 * 179.83936 * 5 4 3 7 7 O 1.21686 * 119.99852 * 359.68570 * 6 5 4 8 8 N 1.34773 * 120.00025 * 179.68584 * 6 5 4 9 9 C 1.39358 * 120.00005 * 184.48835 * 8 6 5 10 10 C 1.38630 * 119.58418 * 185.35363 * 9 8 6 11 11 C 1.40802 * 118.79462 * 180.02562 * 10 9 8 12 12 C 1.41542 * 120.99594 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00049 * 151.92502 * 12 11 10 14 14 C 1.40035 * 120.00079 * 331.92981 * 12 11 10 15 15 N 1.30746 * 119.99978 * 162.25108 * 14 12 11 16 16 Si 1.86800 * 119.99740 * 342.24722 * 14 12 11 17 17 H 1.48498 * 109.47130 * 90.31815 * 16 14 12 18 18 H 1.48505 * 109.47092 * 210.31483 * 16 14 12 19 19 H 1.48500 * 109.47188 * 330.31322 * 16 14 12 20 20 C 1.41177 * 118.01010 * 0.02562 * 11 10 9 21 21 C 1.37583 * 119.02091 * 359.97438 * 20 11 10 22 22 N 1.32086 * 121.11625 * 359.97438 * 21 20 11 23 23 N 1.34507 * 125.41377 * 180.02562 * 2 1 3 24 24 H 0.96996 * 126.47510 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.46918 * 269.97832 * 1 2 3 26 26 H 1.09002 * 109.47278 * 29.97957 * 1 2 3 27 27 H 1.09004 * 109.46839 * 149.97788 * 1 2 3 28 28 H 1.07998 * 126.10465 * 180.27487 * 4 3 2 29 29 H 0.97004 * 120.00215 * 4.48446 * 8 6 5 30 30 H 1.08000 * 120.60427 * 0.04098 * 10 9 8 31 31 H 0.97000 * 119.99723 * 179.97438 * 15 14 12 32 32 H 1.07995 * 120.49066 * 179.97438 * 20 11 10 33 33 H 1.08002 * 119.44449 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7051 0.0056 5 6 3.5977 -0.6609 -0.0007 6 6 4.8025 -1.4981 -0.0012 7 8 5.9035 -0.9797 -0.0013 8 7 4.6900 -2.8411 -0.0014 9 6 5.8308 -3.6359 0.0926 10 6 5.7168 -5.0129 -0.0203 11 6 6.8801 -5.8001 0.0778 12 6 6.8174 -7.2100 -0.0302 13 1 7.6684 -7.7615 -0.4018 14 6 5.6520 -7.8898 0.3448 15 7 5.4499 -9.1152 -0.0637 16 14 4.3862 -7.0458 1.4287 17 1 3.3954 -6.3412 0.5760 18 1 3.6907 -8.0609 2.2600 19 1 5.0662 -6.0644 2.3117 20 6 8.1108 -5.1411 0.2881 21 6 8.1247 -3.7689 0.3875 22 7 7.0107 -3.0660 0.2889 23 7 2.2865 -1.0962 -0.0005 24 1 1.9850 -2.0181 -0.0013 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 4.3976 1.3725 0.0111 29 1 3.8149 -3.2545 -0.0669 30 1 4.7532 -5.4735 -0.1809 31 1 4.6428 -9.5862 0.1964 32 1 9.0277 -5.7057 0.3699 33 1 9.0624 -3.2577 0.5479 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531674329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:11 Heat of formation + Delta-G solvation = 36.224779 kcal Electronic energy + Delta-G solvation = -19718.771765 eV Core-core repulsion = 16551.525524 eV Total energy + Delta-G solvation = -3167.246242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.32959 -41.30737 -39.60362 -36.28497 -35.71084 -33.82048 -33.27154 -32.85684 -30.78116 -28.38874 -27.94116 -24.83251 -24.27065 -22.81955 -21.81046 -21.43343 -19.96049 -19.60747 -18.07733 -17.32510 -17.14881 -16.88363 -16.41788 -15.93767 -15.85087 -15.67343 -14.98081 -14.84378 -14.78642 -14.43983 -14.30318 -13.56410 -13.42780 -13.22632 -12.80364 -12.70867 -12.64866 -11.88882 -11.72982 -11.57172 -11.32312 -11.28689 -11.15081 -10.20272 -9.78441 -9.65554 -9.08550 -9.01044 -6.76295 0.03780 0.63936 0.73952 1.17931 1.37354 1.45100 1.67768 1.74404 1.91516 2.05539 2.21807 2.64114 3.32016 3.48240 3.58936 3.90256 4.11146 4.26050 4.41151 4.54583 4.56616 4.59763 4.70708 4.75988 4.82440 5.08069 5.11669 5.23772 5.39735 5.42939 5.64437 5.94627 6.12616 6.22268 6.30272 6.48251 6.64256 6.80375 6.98664 7.59115 8.04991 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.005267 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.057659 B = 5314.952722 C = 6446.039175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.253 3.747 3 N -0.526 5.526 4 C 0.066 3.934 5 C -0.101 4.101 6 C 0.585 3.415 7 O -0.503 6.503 8 N -0.652 5.652 9 C 0.366 3.634 10 C -0.330 4.330 11 C 0.114 3.886 12 C -0.469 4.469 13 H 0.067 0.933 14 C 0.053 3.947 15 N -0.828 5.828 16 Si 0.968 3.032 17 H -0.239 1.239 18 H -0.274 1.274 19 H -0.267 1.267 20 C -0.282 4.282 21 C 0.130 3.870 22 N -0.575 5.575 23 N -0.542 5.542 24 H 0.437 0.563 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.184 0.816 29 H 0.419 0.581 30 H 0.122 0.878 31 H 0.300 0.700 32 H 0.122 0.878 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.098 10.611 1.424 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.011 4.011 3 N -0.246 5.246 4 C -0.088 4.088 5 C -0.217 4.217 6 C 0.372 3.628 7 O -0.374 6.374 8 N -0.299 5.299 9 C 0.137 3.863 10 C -0.355 4.355 11 C 0.105 3.895 12 C -0.499 4.499 13 H 0.085 0.915 14 C -0.165 4.165 15 N -0.452 5.452 16 Si 0.791 3.209 17 H -0.164 1.164 18 H -0.200 1.200 19 H -0.191 1.191 20 C -0.305 4.305 21 C -0.021 4.021 22 N -0.295 5.295 23 N -0.149 5.149 24 H 0.278 0.722 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.201 0.799 29 H 0.257 0.743 30 H 0.140 0.860 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.645 12.481 1.451 18.549 hybrid contribution -0.070 -2.670 0.116 2.673 sum -13.715 9.811 1.566 16.936 Atomic orbital electron populations 1.20586 0.80603 1.06250 1.05691 1.24387 0.97535 0.80679 0.98466 1.70241 1.01892 1.29613 1.22902 1.22799 0.95420 0.91332 0.99222 1.20775 0.83846 0.95602 1.21460 1.17291 0.87728 0.81159 0.76605 1.90917 1.26973 1.72724 1.46785 1.43284 1.08360 1.05809 1.72437 1.18141 0.86889 0.87120 0.94107 1.21373 1.00119 0.91733 1.22285 1.17865 0.91747 0.93338 0.86526 1.19519 1.00563 0.90887 1.38905 0.91452 1.26885 0.99362 0.95196 0.95060 1.69658 1.27483 1.12842 1.35264 0.85498 0.78168 0.78326 0.78906 1.16364 1.19985 1.19148 1.22128 0.98623 0.95554 1.14228 1.22388 0.95522 0.90811 0.93415 1.67416 0.97678 1.39961 1.24477 1.43207 1.04738 1.11323 1.55633 0.72174 0.87803 0.88033 0.87615 0.79877 0.74339 0.86021 0.88902 0.85963 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.51 71.24 0.75 0.19 16 2 C 0.25 4.60 8.12 138.20 1.12 5.72 16 3 N -0.53 -13.25 11.20 -187.37 -2.10 -15.35 16 4 C 0.07 1.85 11.66 84.11 0.98 2.83 16 5 C -0.10 -2.78 7.07 40.00 0.28 -2.50 16 6 C 0.58 20.79 7.74 86.46 0.67 21.45 16 7 O -0.50 -22.07 15.18 -4.30 -0.07 -22.13 16 8 N -0.65 -22.65 5.38 -312.23 -1.68 -24.33 16 9 C 0.37 16.08 7.40 132.79 0.98 17.06 16 10 C -0.33 -14.97 7.21 22.99 0.17 -14.80 16 11 C 0.11 5.62 5.17 -21.12 -0.11 5.51 16 12 C -0.47 -24.73 9.64 23.52 0.23 -24.50 16 13 H 0.07 3.81 8.06 -2.91 -0.02 3.78 16 14 C 0.05 2.62 5.44 85.29 0.46 3.09 16 15 N -0.83 -41.57 13.92 21.84 0.30 -41.26 16 16 Si 0.97 38.38 24.54 68.60 1.68 40.06 16 17 H -0.24 -8.15 6.45 99.48 0.64 -7.51 16 18 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 19 H -0.27 -11.41 7.00 99.48 0.70 -10.71 16 20 C -0.28 -12.93 9.90 22.84 0.23 -12.71 16 21 C 0.13 5.70 11.15 84.50 0.94 6.64 16 22 N -0.58 -27.05 7.88 -193.58 -1.52 -28.58 16 23 N -0.54 -10.08 6.08 -176.12 -1.07 -11.15 16 24 H 0.44 5.07 8.32 -92.71 -0.77 4.30 16 25 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.18 4.91 8.06 -2.91 -0.02 4.89 16 29 H 0.42 10.89 7.95 -92.71 -0.74 10.15 16 30 H 0.12 5.10 4.43 -2.91 -0.01 5.09 16 31 H 0.30 13.30 8.29 -92.71 -0.77 12.53 16 32 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 33 H 0.16 5.90 8.06 -2.91 -0.02 5.88 16 Total: -1.00 -70.93 291.40 1.85 -69.08 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -0.40 Total: 25.66 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 6.70 Total: 7.99 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -6.07 Total: -120.66 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.07 Total: -22.13 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.68 Total: 40.06 kcal Total: -70.93 1.85 -69.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531674329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.305 kcal (2) G-P(sol) polarization free energy of solvation -70.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds