Wall clock time and date at job start Mon Mar 30 2020 01:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35366 * 126.38253 * 2 1 4 4 C 1.41516 * 105.50235 * 179.97438 * 3 2 1 5 5 C 1.47665 * 126.51942 * 180.02562 * 4 3 2 6 6 O 1.21571 * 120.00237 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00279 * 180.02562 * 5 4 3 8 8 C 1.39382 * 120.00453 * 175.13331 * 7 5 4 9 9 C 1.38618 * 119.58439 * 184.91463 * 8 7 5 10 10 C 1.40804 * 118.79371 * 179.71548 * 9 8 7 11 11 C 1.41541 * 120.99648 * 180.27260 * 10 9 8 12 12 H 1.08005 * 120.00364 * 203.94233 * 11 10 9 13 13 C 1.40037 * 119.99873 * 23.94636 * 11 10 9 14 14 N 1.30742 * 119.99950 * 16.76998 * 13 11 10 15 15 Si 1.86798 * 120.00024 * 196.76558 * 13 11 10 16 16 H 1.48508 * 109.47148 * 60.00285 * 15 13 11 17 17 H 1.48493 * 109.47158 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47339 * 300.00468 * 15 13 11 19 19 C 1.41183 * 118.00927 * 0.54574 * 10 9 8 20 20 C 1.37581 * 119.01659 * 359.72924 * 19 10 9 21 21 N 1.32080 * 121.11375 * 359.97438 * 20 19 10 22 22 N 1.31821 * 106.95700 * 0.02562 * 4 3 2 23 23 N 1.28468 * 110.07550 * 359.74156 * 22 4 3 24 24 H 0.97000 * 124.88460 * 180.24596 * 23 22 4 25 25 H 1.08998 * 109.47470 * 89.99861 * 1 2 3 26 26 H 1.09004 * 109.47149 * 329.99924 * 1 2 3 27 27 H 1.09003 * 109.47017 * 210.00049 * 1 2 3 28 28 H 1.08001 * 127.24611 * 359.94855 * 3 2 1 29 29 H 0.97004 * 119.99830 * 355.13507 * 7 5 4 30 30 H 1.07997 * 120.60128 * 359.97438 * 9 8 7 31 31 H 0.96995 * 119.99909 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.49013 * 179.76318 * 19 10 9 33 33 H 1.08001 * 119.44354 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 6 3.6322 0.5854 0.0006 5 6 4.8762 1.3810 0.0014 6 8 4.8211 2.5955 0.0020 7 7 6.0728 0.7608 0.0014 8 6 7.2451 1.5079 -0.1003 9 6 8.4647 0.8571 -0.2025 10 6 9.6379 1.6281 -0.3105 11 6 10.9072 1.0121 -0.4231 12 1 11.7960 1.5477 -0.1237 13 6 11.0107 -0.2920 -0.9229 14 7 10.0133 -0.8202 -1.5829 15 14 12.5738 -1.2767 -0.6468 16 1 12.8103 -1.4315 0.8112 17 1 12.4313 -2.6167 -1.2706 18 1 13.7227 -0.5646 -1.2617 19 6 9.5108 3.0342 -0.2971 20 6 8.2571 3.5899 -0.1860 21 7 7.1800 2.8312 -0.0928 22 7 3.5420 -0.7297 0.0004 23 7 2.3080 -1.0871 0.0051 24 1 1.9965 -2.0057 0.0093 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 2.0055 2.1260 -0.0008 29 1 6.1182 -0.2056 0.0721 30 1 8.5137 -0.2217 -0.2036 31 1 10.0851 -1.7233 -1.9294 32 1 10.3847 3.6641 -0.3736 33 1 8.1519 4.6647 -0.1755 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531924609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:54 Heat of formation + Delta-G solvation = 73.353498 kcal Electronic energy + Delta-G solvation = -19487.328572 eV Core-core repulsion = 16321.692353 eV Total energy + Delta-G solvation = -3165.636220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.63954 -39.31959 -37.58189 -34.29362 -33.71495 -32.79453 -31.80239 -30.49638 -28.61808 -27.11015 -25.95843 -24.19419 -21.91560 -21.27709 -20.99854 -19.35341 -17.83176 -17.41085 -16.80818 -15.84340 -15.56981 -15.17493 -14.24668 -14.17766 -14.08724 -13.89201 -13.56147 -13.31415 -13.19152 -12.81930 -12.56904 -12.39062 -12.20967 -11.42387 -11.19095 -10.87642 -10.81894 -10.28816 -10.14605 -9.71519 -9.53885 -9.30786 -9.30156 -8.98461 -7.96747 -7.70116 -6.98098 -6.77206 -4.57648 1.69080 2.10640 2.80759 2.81532 2.86074 3.03052 3.05908 3.29637 3.68446 3.87231 3.96755 4.53647 4.58306 4.71560 4.85252 5.19823 5.42515 5.52528 5.62350 5.72985 5.87233 6.05297 6.40110 6.63210 6.71295 6.84518 6.93970 7.00158 7.14146 7.43056 7.50110 7.74811 7.88493 8.03415 8.26509 8.45335 8.74229 8.77842 8.92919 9.73492 10.09849 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026203 B = 0.004259 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.342166 B = 6572.674551 C = 7562.317565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.006 3.994 3 C -0.178 4.178 4 C 0.000 4.000 5 C 0.586 3.414 6 O -0.472 6.472 7 N -0.644 5.644 8 C 0.337 3.663 9 C -0.241 4.241 10 C 0.144 3.856 11 C -0.456 4.456 12 H 0.082 0.918 13 C 0.078 3.922 14 N -0.786 5.786 15 Si 0.912 3.088 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.264 1.264 19 C -0.285 4.285 20 C 0.120 3.880 21 N -0.555 5.555 22 N -0.261 5.261 23 N -0.385 5.385 24 H 0.442 0.558 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.162 0.838 29 H 0.413 0.587 30 H 0.128 0.872 31 H 0.283 0.717 32 H 0.102 0.898 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.179 -5.009 2.142 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C -0.206 4.206 4 C -0.161 4.161 5 C 0.368 3.632 6 O -0.340 6.340 7 N -0.290 5.290 8 C 0.113 3.887 9 C -0.266 4.266 10 C 0.136 3.864 11 C -0.487 4.487 12 H 0.100 0.900 13 C -0.141 4.141 14 N -0.411 5.411 15 Si 0.736 3.264 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.189 1.189 19 C -0.309 4.309 20 C -0.034 4.034 21 N -0.275 5.275 22 N -0.097 5.097 23 N -0.099 5.099 24 H 0.286 0.714 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.180 0.820 29 H 0.249 0.751 30 H 0.146 0.854 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.517 -4.835 2.068 15.440 hybrid contribution 0.919 -1.330 -0.095 1.619 sum -13.598 -6.164 1.972 15.060 Atomic orbital electron populations 1.20323 0.86668 1.03815 1.03259 1.21426 0.95286 0.87293 1.07993 1.21540 0.90494 0.99746 1.08851 1.22249 0.95630 0.89557 1.08692 1.16994 0.81358 0.86782 0.78049 1.90873 1.85696 1.12052 1.45363 1.43245 1.04005 1.10473 1.71243 1.18158 0.84197 0.89025 0.97312 1.21539 0.90288 1.00720 1.14102 1.17550 0.92845 0.90473 0.85563 1.19543 0.93586 0.98018 1.37577 0.89980 1.25965 0.98150 0.97778 0.92226 1.69776 1.32051 1.15468 1.23847 0.86311 0.81665 0.78542 0.79891 1.18710 1.20281 1.18895 1.21886 0.97106 0.95625 1.16299 1.21758 0.87978 0.97630 0.96079 1.67221 1.32347 1.03751 1.24165 1.73601 1.01345 1.15312 1.19449 1.43292 1.03045 1.09374 1.54198 0.71390 0.90384 0.89555 0.91260 0.82016 0.75097 0.85426 0.90638 0.87968 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.44 36.00 0.38 -0.10 16 2 C 0.01 0.06 7.23 -82.21 -0.59 -0.54 16 3 C -0.18 -2.52 10.73 -39.36 -0.42 -2.94 16 4 C 0.00 0.01 7.13 -82.77 -0.59 -0.58 16 5 C 0.59 12.53 7.78 -12.41 -0.10 12.43 16 6 O -0.47 -11.58 15.18 5.30 0.08 -11.50 16 7 N -0.64 -14.11 5.38 -12.40 -0.07 -14.18 16 8 C 0.34 8.62 7.41 -154.77 -1.15 7.47 16 9 C -0.24 -6.33 8.62 -38.47 -0.33 -6.67 16 10 C 0.14 3.87 5.60 -106.55 -0.60 3.27 16 11 C -0.46 -11.90 9.12 -37.65 -0.34 -12.24 16 12 H 0.08 2.04 7.90 -52.48 -0.41 1.62 16 13 C 0.08 1.92 5.20 -17.34 -0.09 1.83 16 14 N -0.79 -19.79 10.93 55.55 0.61 -19.18 16 15 Si 0.91 18.15 29.59 -169.99 -5.03 13.12 16 16 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 19 C -0.29 -7.14 9.90 -38.70 -0.38 -7.53 16 20 C 0.12 2.95 11.15 -17.68 -0.20 2.75 16 21 N -0.56 -14.69 7.85 -12.54 -0.10 -14.79 16 22 N -0.26 -3.90 11.93 33.42 0.40 -3.50 16 23 N -0.38 -4.09 6.83 33.50 0.23 -3.86 16 24 H 0.44 2.86 8.96 -190.44 -1.71 1.15 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.16 2.13 8.06 -52.49 -0.42 1.70 16 29 H 0.41 8.01 8.43 -40.82 -0.34 7.66 16 30 H 0.13 3.34 6.20 -52.49 -0.33 3.01 16 31 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 32 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -33.30 297.70 -8.27 -41.58 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -4.46 Total: 10.67 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -4.42 Total: -2.84 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 1.07 Total: -55.51 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.30 -8.27 -41.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.929 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds