Wall clock time and date at job start Mon Mar 30 2020 01:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35366 * 126.38253 * 2 1 4 4 C 1.41516 * 105.50235 * 179.97438 * 3 2 1 5 5 C 1.47665 * 126.51942 * 180.02562 * 4 3 2 6 6 O 1.21571 * 120.00237 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00279 * 180.02562 * 5 4 3 8 8 C 1.39382 * 120.00453 * 175.13331 * 7 5 4 9 9 C 1.38618 * 119.58439 * 184.91463 * 8 7 5 10 10 C 1.40804 * 118.79371 * 179.71548 * 9 8 7 11 11 C 1.41541 * 120.99648 * 180.27260 * 10 9 8 12 12 H 1.08005 * 120.00364 * 203.94233 * 11 10 9 13 13 C 1.40037 * 119.99873 * 23.94636 * 11 10 9 14 14 N 1.30742 * 119.99950 * 16.76998 * 13 11 10 15 15 Si 1.86798 * 120.00024 * 196.76558 * 13 11 10 16 16 H 1.48508 * 109.47148 * 60.00285 * 15 13 11 17 17 H 1.48493 * 109.47158 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47339 * 300.00468 * 15 13 11 19 19 C 1.41183 * 118.00927 * 0.54574 * 10 9 8 20 20 C 1.37581 * 119.01659 * 359.72924 * 19 10 9 21 21 N 1.32080 * 121.11375 * 359.97438 * 20 19 10 22 22 N 1.31821 * 106.95700 * 0.02562 * 4 3 2 23 23 N 1.28468 * 110.07550 * 359.74156 * 22 4 3 24 24 H 0.97000 * 124.88460 * 180.24596 * 23 22 4 25 25 H 1.08998 * 109.47470 * 89.99861 * 1 2 3 26 26 H 1.09004 * 109.47149 * 329.99924 * 1 2 3 27 27 H 1.09003 * 109.47017 * 210.00049 * 1 2 3 28 28 H 1.08001 * 127.24611 * 359.94855 * 3 2 1 29 29 H 0.97004 * 119.99830 * 355.13507 * 7 5 4 30 30 H 1.07997 * 120.60128 * 359.97438 * 9 8 7 31 31 H 0.96995 * 119.99909 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.49013 * 179.76318 * 19 10 9 33 33 H 1.08001 * 119.44354 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 6 3.6322 0.5854 0.0006 5 6 4.8762 1.3810 0.0014 6 8 4.8211 2.5955 0.0020 7 7 6.0728 0.7608 0.0014 8 6 7.2451 1.5079 -0.1003 9 6 8.4647 0.8571 -0.2025 10 6 9.6379 1.6281 -0.3105 11 6 10.9072 1.0121 -0.4231 12 1 11.7960 1.5477 -0.1237 13 6 11.0107 -0.2920 -0.9229 14 7 10.0133 -0.8202 -1.5829 15 14 12.5738 -1.2767 -0.6468 16 1 12.8103 -1.4315 0.8112 17 1 12.4313 -2.6167 -1.2706 18 1 13.7227 -0.5646 -1.2617 19 6 9.5108 3.0342 -0.2971 20 6 8.2571 3.5899 -0.1860 21 7 7.1800 2.8312 -0.0928 22 7 3.5420 -0.7297 0.0004 23 7 2.3080 -1.0871 0.0051 24 1 1.9965 -2.0057 0.0093 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 2.0055 2.1260 -0.0008 29 1 6.1182 -0.2056 0.0721 30 1 8.5137 -0.2217 -0.2036 31 1 10.0851 -1.7233 -1.9294 32 1 10.3847 3.6641 -0.3736 33 1 8.1519 4.6647 -0.1755 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531924609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:54 Heat of formation + Delta-G solvation = 50.373632 kcal Electronic energy + Delta-G solvation = -19488.325054 eV Core-core repulsion = 16321.692353 eV Total energy + Delta-G solvation = -3166.632701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.70230 -41.12261 -39.42652 -36.16572 -35.54304 -33.68511 -32.95183 -32.44438 -30.44093 -27.96010 -27.86039 -25.68982 -23.85664 -22.79081 -22.22978 -21.00812 -19.50407 -18.58545 -18.38935 -17.33025 -16.98181 -16.95410 -16.08159 -15.87748 -15.81641 -15.33835 -14.80225 -14.68829 -14.35780 -14.17698 -14.01865 -13.67191 -13.20345 -13.08002 -12.92320 -12.64860 -12.10949 -11.96077 -11.89390 -11.54999 -11.31779 -11.15445 -10.45485 -9.97083 -9.94160 -9.65559 -8.89387 -8.65450 -6.57182 0.32559 0.91426 1.00169 1.17576 1.40919 1.52762 1.60267 1.82988 2.19519 2.20857 2.37534 2.81781 3.31041 3.74077 3.77281 3.95360 4.21055 4.48147 4.59141 4.76252 4.80976 4.82657 4.91862 5.02901 5.06400 5.12922 5.21059 5.33903 5.47266 5.60615 5.88592 6.04988 6.17765 6.41441 6.53976 6.77225 6.81231 6.84032 7.19486 7.79979 8.25743 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026203 B = 0.004259 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.342166 B = 6572.674551 C = 7562.317565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.038 3.962 3 C -0.204 4.204 4 C -0.033 4.033 5 C 0.584 3.416 6 O -0.512 6.512 7 N -0.642 5.642 8 C 0.332 3.668 9 C -0.259 4.259 10 C 0.115 3.885 11 C -0.484 4.484 12 H 0.087 0.913 13 C 0.038 3.962 14 N -0.812 5.812 15 Si 0.990 3.010 16 H -0.259 1.259 17 H -0.266 1.266 18 H -0.258 1.258 19 C -0.297 4.297 20 C 0.115 3.885 21 N -0.581 5.581 22 N -0.274 5.274 23 N -0.361 5.361 24 H 0.463 0.537 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.163 0.837 29 H 0.422 0.578 30 H 0.122 0.878 31 H 0.293 0.707 32 H 0.120 0.880 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.344 -6.744 2.192 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.232 4.232 4 C -0.193 4.193 5 C 0.369 3.631 6 O -0.383 6.383 7 N -0.288 5.288 8 C 0.106 3.894 9 C -0.285 4.285 10 C 0.107 3.893 11 C -0.514 4.514 12 H 0.106 0.894 13 C -0.179 4.179 14 N -0.437 5.437 15 Si 0.810 3.190 16 H -0.183 1.183 17 H -0.190 1.190 18 H -0.182 1.182 19 C -0.321 4.321 20 C -0.038 4.038 21 N -0.301 5.301 22 N -0.112 5.112 23 N -0.079 5.079 24 H 0.311 0.689 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.181 0.819 29 H 0.259 0.741 30 H 0.140 0.860 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.708 -6.600 2.116 17.170 hybrid contribution 1.148 -0.852 -0.140 1.437 sum -14.560 -7.453 1.976 16.475 Atomic orbital electron populations 1.20557 0.82644 1.05761 1.04924 1.22005 0.97178 0.85615 1.04134 1.21736 0.89741 1.01165 1.10602 1.21712 0.94708 0.90483 1.12356 1.17550 0.82175 0.86811 0.76519 1.90822 1.86449 1.13862 1.47165 1.43274 1.03584 1.10751 1.71165 1.18402 0.85256 0.89172 0.96526 1.21506 0.90791 1.00388 1.15812 1.17991 0.93597 0.91594 0.86101 1.19873 0.93523 0.99503 1.38490 0.89443 1.26889 1.01780 0.98120 0.91123 1.69823 1.34031 1.16192 1.23646 0.85135 0.76985 0.77064 0.79834 1.18343 1.19046 1.18195 1.22094 0.97994 0.95354 1.16668 1.22261 0.87597 0.99016 0.94969 1.67341 1.33158 1.04248 1.25335 1.73501 1.03558 1.14207 1.19899 1.43413 1.01902 1.10783 1.51824 0.68852 0.88661 0.88562 0.88399 0.81905 0.74080 0.86047 0.89643 0.86235 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.44 71.24 0.74 0.15 16 2 C 0.04 0.68 7.23 41.40 0.30 0.98 16 3 C -0.20 -5.63 10.73 22.41 0.24 -5.39 16 4 C -0.03 -1.15 7.13 42.45 0.30 -0.85 16 5 C 0.58 26.00 7.78 86.73 0.68 26.68 16 6 O -0.51 -26.22 15.18 -3.94 -0.06 -26.28 16 7 N -0.64 -29.32 5.38 -311.43 -1.68 -31.00 16 8 C 0.33 17.62 7.41 132.78 0.98 18.61 16 9 C -0.26 -14.16 8.62 22.99 0.20 -13.96 16 10 C 0.12 6.38 5.60 -21.11 -0.12 6.26 16 11 C -0.48 -25.57 9.12 23.52 0.21 -25.36 16 12 H 0.09 4.37 7.90 -2.91 -0.02 4.35 16 13 C 0.04 1.87 5.20 85.29 0.44 2.32 16 14 N -0.81 -41.18 10.93 21.84 0.24 -40.94 16 15 Si 0.99 36.57 29.59 68.60 2.03 38.60 16 16 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 17 H -0.27 -9.25 7.11 99.48 0.71 -8.55 16 18 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 19 C -0.30 -15.20 9.90 22.84 0.23 -14.97 16 20 C 0.12 5.78 11.15 84.50 0.94 6.72 16 21 N -0.58 -31.71 7.85 -193.58 -1.52 -33.23 16 22 N -0.27 -7.97 11.93 -48.19 -0.57 -8.54 16 23 N -0.36 -6.77 6.83 -47.93 -0.33 -7.10 16 24 H 0.46 4.38 8.96 -219.99 -1.97 2.41 16 25 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 27 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 29 H 0.42 17.10 8.43 -92.71 -0.78 16.32 16 30 H 0.12 6.62 6.20 -2.91 -0.02 6.61 16 31 H 0.29 13.30 8.29 -92.71 -0.77 12.53 16 32 H 0.12 5.51 8.06 -2.91 -0.02 5.48 16 33 H 0.15 6.54 8.06 -2.91 -0.02 6.52 16 Total: -1.00 -74.96 297.70 1.69 -73.27 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -1.57 Total: 34.04 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 5.15 Total: 1.18 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -3.86 Total: -120.80 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.06 Total: -26.28 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -74.96 1.69 -73.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.640 kcal (2) G-P(sol) polarization free energy of solvation -74.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds