Wall clock time and date at job start Mon Mar 30 2020 01:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28442 * 125.19296 * 2 1 4 4 C 1.30865 * 110.93244 * 180.02562 * 3 2 1 5 5 C 1.39666 * 107.86915 * 359.75315 * 4 3 2 6 6 C 1.36609 * 125.18926 * 180.02562 * 2 1 3 7 7 C 1.47111 * 126.89015 * 359.95110 * 6 2 1 8 8 O 1.21626 * 120.00176 * 173.77997 * 7 6 2 9 9 N 1.34779 * 119.99664 * 353.77503 * 7 6 2 10 10 C 1.39367 * 119.99905 * 175.70303 * 9 7 6 11 11 C 1.38627 * 119.58311 * 174.69221 * 10 9 7 12 12 C 1.40800 * 118.79120 * 180.02562 * 11 10 9 13 13 C 1.41549 * 120.99275 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00319 * 206.24245 * 13 12 11 15 15 C 1.40031 * 119.99955 * 26.24175 * 13 12 11 16 16 N 1.30740 * 120.00219 * 10.56913 * 15 13 12 17 17 Si 1.86798 * 120.00023 * 190.56358 * 15 13 12 18 18 H 1.48493 * 109.47244 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46991 * 120.00011 * 17 15 13 20 20 H 1.48504 * 109.47581 * 239.99982 * 17 15 13 21 21 C 1.41181 * 118.01500 * 359.97438 * 12 11 10 22 22 C 1.37581 * 119.01546 * 0.02895 * 21 12 11 23 23 N 1.32090 * 121.11720 * 359.97147 * 22 21 12 24 24 H 1.08998 * 109.47318 * 264.18327 * 1 2 3 25 25 H 1.09001 * 109.46729 * 24.18448 * 1 2 3 26 26 H 1.09004 * 109.46759 * 144.17903 * 1 2 3 27 27 H 1.08000 * 126.06375 * 179.97438 * 4 3 2 28 28 H 1.07995 * 127.32165 * 180.24612 * 5 4 3 29 29 H 0.96998 * 120.00539 * 355.70809 * 9 7 6 30 30 H 1.07994 * 120.60572 * 0.02562 * 11 10 9 31 31 H 0.97000 * 120.00886 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.49040 * 179.97438 * 21 12 11 33 33 H 1.07999 * 119.44303 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4736 0.7273 -0.0005 5 6 3.5615 -0.6666 0.0048 6 6 2.2523 -1.1164 -0.0005 7 6 1.7996 -2.5162 -0.0001 8 8 2.6087 -3.4170 -0.1148 9 7 0.4883 -2.8003 0.1274 10 6 0.0493 -4.1200 0.0380 11 6 -1.2833 -4.4158 0.2798 12 6 -1.7086 -5.7547 0.1855 13 6 -3.0582 -6.1093 0.4233 14 1 -3.3030 -7.1042 0.7647 15 6 -4.0758 -5.1700 0.2159 16 7 -3.8107 -4.0417 -0.3890 17 14 -5.8122 -5.5292 0.8035 18 1 -5.8488 -6.8638 1.4533 19 1 -6.2286 -4.4916 1.7810 20 1 -6.7398 -5.5172 -0.3562 21 6 -0.7488 -6.7331 -0.1534 22 6 0.5518 -6.3432 -0.3754 23 7 0.9109 -5.0759 -0.2768 24 1 -0.3634 -0.1041 1.0223 25 1 -0.3633 0.9375 -0.4210 26 1 -0.3633 -0.8333 -0.6015 27 1 4.3048 1.4168 -0.0011 28 1 4.4598 -1.2660 0.0095 29 1 -0.1500 -2.0863 0.2812 30 1 -1.9825 -3.6336 0.5358 31 1 -4.5156 -3.3911 -0.5330 32 1 -1.0312 -7.7722 -0.2363 33 1 1.2918 -7.0860 -0.6346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531925189.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:55 Heat of formation + Delta-G solvation = 75.327689 kcal Electronic energy + Delta-G solvation = -19986.914878 eV Core-core repulsion = 16821.364265 eV Total energy + Delta-G solvation = -3165.550612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.60054 -41.20271 -39.49335 -36.37642 -35.81925 -34.22985 -32.54830 -32.07569 -30.26580 -28.30158 -27.92542 -25.12526 -23.90700 -22.56252 -22.54158 -21.34062 -19.58446 -19.15608 -17.77349 -17.40159 -17.12181 -16.78807 -16.09879 -15.99609 -15.85515 -15.69115 -14.98323 -14.68586 -14.38493 -14.27909 -14.17652 -13.84645 -13.38108 -13.19140 -12.88981 -12.71954 -12.21369 -11.97071 -11.87998 -11.63414 -11.31210 -11.22750 -10.28994 -10.08355 -9.96926 -9.70995 -8.96693 -8.62640 -6.60105 0.04648 0.84727 0.96752 1.39353 1.42605 1.54186 1.56574 1.63714 1.88076 2.15917 2.20565 2.80238 3.27582 3.50310 3.69735 4.03040 4.10661 4.18458 4.29070 4.46387 4.52682 4.69655 4.72433 4.87190 4.92028 5.02228 5.22174 5.42277 5.44323 5.53476 5.65016 5.88391 6.04831 6.32925 6.49100 6.74670 6.81295 6.91483 7.06290 7.73522 8.27134 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.005044 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.390482 B = 5550.082737 C = 6650.980916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.277 5.277 3 N -0.285 5.285 4 C 0.002 3.998 5 C -0.162 4.162 6 C -0.061 4.061 7 C 0.575 3.425 8 O -0.505 6.505 9 N -0.652 5.652 10 C 0.327 3.673 11 C -0.252 4.252 12 C 0.114 3.886 13 C -0.481 4.481 14 H 0.084 0.916 15 C 0.040 3.960 16 N -0.816 5.816 17 Si 0.988 3.012 18 H -0.260 1.260 19 H -0.261 1.261 20 H -0.267 1.267 21 C -0.292 4.292 22 C 0.113 3.887 23 N -0.579 5.579 24 H 0.111 0.889 25 H 0.134 0.866 26 H 0.091 0.909 27 H 0.227 0.773 28 H 0.172 0.828 29 H 0.418 0.582 30 H 0.132 0.868 31 H 0.293 0.707 32 H 0.119 0.881 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 10.091 1.584 10.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.068 5.068 3 N -0.118 5.118 4 C -0.174 4.174 5 C -0.191 4.191 6 C -0.189 4.189 7 C 0.361 3.639 8 O -0.375 6.375 9 N -0.304 5.304 10 C 0.102 3.898 11 C -0.278 4.278 12 C 0.105 3.895 13 C -0.512 4.512 14 H 0.102 0.898 15 C -0.177 4.177 16 N -0.442 5.442 17 Si 0.809 3.191 18 H -0.183 1.183 19 H -0.186 1.186 20 H -0.191 1.191 21 C -0.315 4.315 22 C -0.040 4.040 23 N -0.299 5.299 24 H 0.129 0.871 25 H 0.152 0.848 26 H 0.109 0.891 27 H 0.243 0.757 28 H 0.189 0.811 29 H 0.262 0.738 30 H 0.149 0.851 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.006 10.835 1.248 11.313 hybrid contribution -1.347 -0.959 0.242 1.671 sum 1.659 9.876 1.490 10.125 Atomic orbital electron populations 1.22741 0.71890 1.07328 1.06159 1.45972 1.08389 1.01780 1.50626 1.73136 1.05103 1.13672 1.19904 1.24199 0.93907 0.94544 1.04738 1.22482 0.95409 0.96054 1.05191 1.21702 0.93565 0.87390 1.16201 1.17491 0.82341 0.86914 0.77175 1.90874 1.53313 1.46750 1.46587 1.43852 1.08589 1.07195 1.70751 1.18390 0.89900 0.84787 0.96737 1.21631 0.92700 0.99333 1.14103 1.18015 0.93865 0.91175 0.86398 1.19915 0.90780 0.99852 1.40642 0.89778 1.26778 1.05545 0.93594 0.91783 1.69755 1.37167 1.07917 1.29339 0.85050 0.75370 0.79796 0.78887 1.18341 1.18571 1.19133 1.22147 0.95163 1.00227 1.14012 1.22236 0.94636 0.91615 0.95539 1.67299 1.37000 1.01235 1.24390 0.87111 0.84787 0.89059 0.75684 0.81075 0.73844 0.85067 0.89597 0.86317 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.13 9.74 127.77 1.24 2.38 16 2 N -0.28 -7.36 3.75 -356.03 -1.33 -8.69 16 3 N -0.28 -7.24 11.90 -57.14 -0.68 -7.92 16 4 C 0.00 0.04 12.03 85.18 1.02 1.06 16 5 C -0.16 -4.43 10.85 22.66 0.25 -4.18 16 6 C -0.06 -1.97 6.95 40.78 0.28 -1.68 16 7 C 0.58 23.14 7.74 86.57 0.67 23.81 16 8 O -0.50 -24.20 15.20 -4.11 -0.06 -24.27 16 9 N -0.65 -25.95 5.05 -311.91 -1.57 -27.53 16 10 C 0.33 15.91 7.40 132.79 0.98 16.89 16 11 C -0.25 -12.62 8.61 22.99 0.20 -12.43 16 12 C 0.11 5.91 5.60 -21.11 -0.12 5.79 16 13 C -0.48 -24.11 9.13 23.52 0.21 -23.90 16 14 H 0.08 4.05 7.87 -2.91 -0.02 4.03 16 15 C 0.04 1.81 5.30 85.29 0.45 2.26 16 16 N -0.82 -37.92 10.73 21.84 0.23 -37.69 16 17 Si 0.99 34.50 29.57 68.60 2.03 36.52 16 18 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 19 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 20 H -0.27 -8.99 7.11 99.48 0.71 -8.29 16 21 C -0.29 -14.15 9.90 22.84 0.23 -13.92 16 22 C 0.11 5.39 11.15 84.50 0.94 6.33 16 23 N -0.58 -29.72 7.87 -193.58 -1.52 -31.25 16 24 H 0.11 1.76 8.08 -2.39 -0.02 1.74 16 25 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.09 1.97 6.00 -2.38 -0.01 1.96 16 27 H 0.23 2.93 8.06 -2.91 -0.02 2.90 16 28 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.42 13.49 4.66 -92.71 -0.43 13.06 16 30 H 0.13 6.41 6.13 -2.91 -0.02 6.40 16 31 H 0.29 12.01 8.29 -92.71 -0.77 11.24 16 32 H 0.12 5.22 8.06 -2.91 -0.02 5.20 16 33 H 0.15 6.17 8.06 -2.91 -0.02 6.15 16 Total: -1.00 -68.35 291.21 4.19 -64.16 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.73 Total: 34.25 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 6.37 Total: 2.41 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -4.88 Total: -113.08 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.52 kcal Total: -68.35 4.19 -64.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531925189.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.487 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds