Wall clock time and date at job start Mon Mar 30 2020 00:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86794 * 119.99812 * 2 1 4 4 H 1.48502 * 109.46975 * 239.99833 * 3 2 1 5 5 H 1.48497 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47058 * 120.00200 * 3 2 1 7 7 C 1.40027 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99874 * 170.18250 * 7 2 1 9 9 C 1.41538 * 120.00491 * 350.17842 * 7 2 1 10 10 C 1.41176 * 120.99772 * 151.67688 * 9 7 2 11 11 C 1.37590 * 119.01251 * 180.02562 * 10 9 7 12 12 N 1.32081 * 121.11347 * 359.73921 * 11 10 9 13 13 C 1.32471 * 122.22843 * 0.53712 * 12 11 10 14 14 N 1.39465 * 119.57931 * 179.74875 * 13 12 11 15 15 C 1.34777 * 119.99968 * 5.08876 * 14 13 12 16 16 O 1.21272 * 119.99923 * 354.97973 * 15 14 13 17 17 C 1.50702 * 120.00212 * 174.97809 * 15 14 13 18 18 N 1.46493 * 109.47579 * 180.02562 * 17 15 14 19 19 C 1.34945 * 126.04173 * 124.99675 * 18 17 15 20 20 C 1.35315 * 107.75100 * 179.77507 * 19 18 17 21 21 C 1.39872 * 107.91488 * 0.22642 * 20 19 18 22 22 N 1.30827 * 108.20736 * 0.02562 * 21 20 19 23 23 C 1.38596 * 120.83899 * 359.46516 * 13 12 11 24 24 H 0.97001 * 120.00127 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.49428 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.44464 * 179.97438 * 11 10 9 27 27 H 0.97000 * 120.00476 * 185.09179 * 14 13 12 28 28 H 1.09000 * 109.46810 * 59.99570 * 17 15 14 29 29 H 1.08999 * 109.47238 * 300.00322 * 17 15 14 30 30 H 1.07997 * 126.12600 * 0.04109 * 19 18 17 31 31 H 1.07998 * 126.04263 * 180.20813 * 20 19 18 32 32 H 1.08001 * 125.89754 * 180.02562 * 21 20 19 33 33 H 1.08006 * 120.60234 * 180.27829 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0757 -1.2197 -0.1589 9 6 1.3154 -2.4294 0.2102 10 6 1.7909 -3.6402 -0.3385 11 6 1.0855 -4.7991 -0.1094 12 7 -0.0187 -4.7940 0.6154 13 6 -0.5093 -3.6846 1.1476 14 7 -1.6825 -3.7421 1.8994 15 6 -2.2538 -4.9332 2.1670 16 8 -1.8001 -5.9465 1.6790 17 6 -3.4561 -5.0058 3.0726 18 7 -3.8851 -6.4003 3.2039 19 6 -4.0442 -7.0765 4.3609 20 6 -4.4538 -8.3290 4.0538 21 6 -4.5433 -8.4230 2.6611 22 7 -4.1993 -7.2687 2.1505 23 6 0.1317 -2.4684 0.9718 24 1 -0.4850 0.8400 0.0004 25 1 2.6944 -3.6564 -0.9299 26 1 1.4427 -5.7292 -0.5262 27 1 -2.0875 -2.9249 2.2298 28 1 -4.2671 -4.4142 2.6478 29 1 -3.1954 -4.6122 4.0550 30 1 -3.8787 -6.6864 5.3543 31 1 -4.6727 -9.1169 4.7592 32 1 -4.8445 -9.2976 2.1035 33 1 -0.2693 -1.5670 1.4112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532434686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:31 Heat of formation + Delta-G solvation = 92.403998 kcal Electronic energy + Delta-G solvation = -19557.207635 eV Core-core repulsion = 16392.397507 eV Total energy + Delta-G solvation = -3164.810128 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.08092 -39.52179 -37.78998 -34.39379 -33.78497 -33.16340 -30.58913 -30.01633 -29.03515 -27.04356 -26.01984 -22.34185 -21.95847 -21.02923 -20.74290 -19.68998 -17.80336 -17.27666 -16.97063 -15.78073 -15.40409 -15.24816 -14.41967 -14.25775 -14.22142 -13.88982 -13.50796 -13.28430 -12.85418 -12.77501 -12.62399 -12.57105 -11.95959 -11.45100 -11.24605 -10.95417 -10.50353 -10.34396 -10.21573 -9.80635 -9.71100 -9.42404 -9.19538 -8.54182 -8.00666 -7.77608 -7.10274 -6.80276 -4.66806 1.96039 2.46246 2.47334 2.77033 2.97779 2.98552 3.01555 3.13338 3.34730 3.50500 3.82832 4.55946 4.64767 4.79792 4.89501 5.00357 5.14609 5.59561 5.61662 5.80240 5.92600 6.04548 6.51203 6.56052 6.71631 6.75043 6.89565 7.00562 7.06974 7.31833 7.40049 7.70421 7.82349 7.87481 8.13954 8.36724 8.64026 8.70858 8.78139 9.62195 10.07062 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038622 B = 0.003836 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.795341 B = 7297.204338 C = 7821.667149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.144 3.856 10 C -0.279 4.279 11 C 0.118 3.882 12 N -0.552 5.552 13 C 0.335 3.665 14 N -0.657 5.657 15 C 0.481 3.519 16 O -0.449 6.449 17 C 0.114 3.886 18 N -0.359 5.359 19 C 0.050 3.950 20 C -0.275 4.275 21 C 0.034 3.966 22 N -0.261 5.261 23 C -0.235 4.235 24 H 0.282 0.718 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.408 0.592 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.172 0.828 31 H 0.145 0.855 32 H 0.180 0.820 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 -3.993 9.068 12.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.136 3.864 10 C -0.303 4.303 11 C -0.037 4.037 12 N -0.271 5.271 13 C 0.110 3.890 14 N -0.305 5.305 15 C 0.263 3.737 16 O -0.315 6.315 17 C -0.012 4.012 18 N -0.142 5.142 19 C -0.096 4.096 20 C -0.304 4.304 21 C -0.153 4.153 22 N -0.082 5.082 23 C -0.261 4.261 24 H 0.093 0.907 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.243 0.757 28 H 0.130 0.870 29 H 0.140 0.860 30 H 0.189 0.811 31 H 0.163 0.837 32 H 0.197 0.803 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.144 -4.612 7.804 12.186 hybrid contribution 0.499 1.637 0.756 1.871 sum -7.645 -2.975 8.560 11.856 Atomic orbital electron populations 1.69737 1.07550 1.29351 1.35661 1.25932 0.94885 1.01392 0.91975 0.86251 0.79978 0.79773 0.80047 1.18909 1.20258 1.18788 1.19535 0.95843 0.90003 1.43513 0.90065 1.17575 0.90195 0.92255 0.86412 1.21961 1.04504 0.94588 1.09269 1.21774 0.90694 0.96578 0.94614 1.67210 1.15534 1.28174 1.16174 1.18161 0.86649 0.91009 0.93132 1.43331 1.25196 1.08675 1.53255 1.20492 0.85140 0.84703 0.83399 1.90869 1.60149 1.33513 1.47003 1.21530 0.97625 0.79499 1.02568 1.48115 1.51847 1.10005 1.04201 1.22509 1.01810 0.93545 0.91694 1.21446 1.15234 0.97748 0.96003 1.23903 1.00441 0.96798 0.94140 1.77561 1.18685 1.01047 1.10892 1.21589 1.01420 0.95331 1.07725 0.90737 0.87861 0.85846 0.75668 0.87040 0.85998 0.81105 0.83711 0.80259 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.33 10.83 55.55 0.60 -18.73 16 2 C 0.08 1.81 5.30 -17.34 -0.09 1.72 16 3 Si 0.92 17.73 29.57 -169.99 -5.03 12.70 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.46 -11.63 9.13 -37.65 -0.34 -11.98 16 8 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 9 C 0.14 3.75 5.58 -106.55 -0.59 3.16 16 10 C -0.28 -6.86 9.90 -38.70 -0.38 -7.24 16 11 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 12 N -0.55 -14.21 7.85 -12.52 -0.10 -14.31 16 13 C 0.34 8.02 7.42 -154.71 -1.15 6.88 16 14 N -0.66 -12.30 5.39 -11.49 -0.06 -12.36 16 15 C 0.48 8.88 7.82 -10.98 -0.09 8.80 16 16 O -0.45 -10.64 13.95 5.56 0.08 -10.56 16 17 C 0.11 1.41 6.99 -5.20 -0.04 1.37 16 18 N -0.36 -5.24 3.40 -62.55 -0.21 -5.45 16 19 C 0.05 0.58 11.45 -17.22 -0.20 0.38 16 20 C -0.27 -3.23 10.80 -40.01 -0.43 -3.66 16 21 C 0.03 0.47 12.02 -17.37 -0.21 0.26 16 22 N -0.26 -4.50 11.63 30.62 0.36 -4.15 16 23 C -0.24 -5.85 8.59 -38.48 -0.33 -6.18 16 24 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 25 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 26 H 0.12 2.65 8.06 -52.48 -0.42 2.22 16 27 H 0.41 5.92 8.70 -40.82 -0.36 5.57 16 28 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.12 0.98 8.07 -51.93 -0.42 0.56 16 30 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.13 3.17 6.27 -52.48 -0.33 2.84 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -34.90 297.73 -7.11 -42.01 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -3.19 Total: 10.20 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -4.05 Total: -3.83 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.58 Total: -55.00 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.90 -7.11 -42.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532434686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.416 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds