Wall clock time and date at job start Mon Mar 30 2020 00:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86794 * 119.99812 * 2 1 4 4 H 1.48502 * 109.46975 * 239.99833 * 3 2 1 5 5 H 1.48497 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47058 * 120.00200 * 3 2 1 7 7 C 1.40027 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99874 * 170.18250 * 7 2 1 9 9 C 1.41538 * 120.00491 * 350.17842 * 7 2 1 10 10 C 1.41176 * 120.99772 * 151.67688 * 9 7 2 11 11 C 1.37590 * 119.01251 * 180.02562 * 10 9 7 12 12 N 1.32081 * 121.11347 * 359.73921 * 11 10 9 13 13 C 1.32471 * 122.22843 * 0.53712 * 12 11 10 14 14 N 1.39465 * 119.57931 * 179.74875 * 13 12 11 15 15 C 1.34777 * 119.99968 * 5.08876 * 14 13 12 16 16 O 1.21272 * 119.99923 * 354.97973 * 15 14 13 17 17 C 1.50702 * 120.00212 * 174.97809 * 15 14 13 18 18 N 1.46493 * 109.47579 * 180.02562 * 17 15 14 19 19 C 1.34945 * 126.04173 * 124.99675 * 18 17 15 20 20 C 1.35315 * 107.75100 * 179.77507 * 19 18 17 21 21 C 1.39872 * 107.91488 * 0.22642 * 20 19 18 22 22 N 1.30827 * 108.20736 * 0.02562 * 21 20 19 23 23 C 1.38596 * 120.83899 * 359.46516 * 13 12 11 24 24 H 0.97001 * 120.00127 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.49428 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.44464 * 179.97438 * 11 10 9 27 27 H 0.97000 * 120.00476 * 185.09179 * 14 13 12 28 28 H 1.09000 * 109.46810 * 59.99570 * 17 15 14 29 29 H 1.08999 * 109.47238 * 300.00322 * 17 15 14 30 30 H 1.07997 * 126.12600 * 0.04109 * 19 18 17 31 31 H 1.07998 * 126.04263 * 180.20813 * 20 19 18 32 32 H 1.08001 * 125.89754 * 180.02562 * 21 20 19 33 33 H 1.08006 * 120.60234 * 180.27829 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0757 -1.2197 -0.1589 9 6 1.3154 -2.4294 0.2102 10 6 1.7909 -3.6402 -0.3385 11 6 1.0855 -4.7991 -0.1094 12 7 -0.0187 -4.7940 0.6154 13 6 -0.5093 -3.6846 1.1476 14 7 -1.6825 -3.7421 1.8994 15 6 -2.2538 -4.9332 2.1670 16 8 -1.8001 -5.9465 1.6790 17 6 -3.4561 -5.0058 3.0726 18 7 -3.8851 -6.4003 3.2039 19 6 -4.0442 -7.0765 4.3609 20 6 -4.4538 -8.3290 4.0538 21 6 -4.5433 -8.4230 2.6611 22 7 -4.1993 -7.2687 2.1505 23 6 0.1317 -2.4684 0.9718 24 1 -0.4850 0.8400 0.0004 25 1 2.6944 -3.6564 -0.9299 26 1 1.4427 -5.7292 -0.5262 27 1 -2.0875 -2.9249 2.2298 28 1 -4.2671 -4.4142 2.6478 29 1 -3.1954 -4.6122 4.0550 30 1 -3.8787 -6.6864 5.3543 31 1 -4.6727 -9.1169 4.7592 32 1 -4.8445 -9.2976 2.1035 33 1 -0.2693 -1.5670 1.4112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532434686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:30 Heat of formation + Delta-G solvation = 68.729951 kcal Electronic energy + Delta-G solvation = -19558.234218 eV Core-core repulsion = 16392.397507 eV Total energy + Delta-G solvation = -3165.836712 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.08857 -41.10548 -39.50365 -36.14645 -35.51295 -34.23983 -32.47197 -31.05072 -30.62534 -28.26194 -27.88821 -23.95321 -23.71271 -22.13795 -21.89590 -21.13086 -19.51031 -18.69364 -18.07878 -17.40403 -16.94825 -16.67198 -16.09777 -15.90561 -15.45462 -15.37319 -14.79669 -14.57797 -14.35900 -14.27184 -14.16677 -13.59599 -13.25555 -13.06218 -12.88254 -12.69542 -12.13932 -11.92790 -11.53996 -11.47230 -11.18686 -11.17567 -10.35457 -9.93138 -9.66015 -9.44522 -8.90641 -8.60810 -6.59296 0.69739 0.98371 0.99790 1.41868 1.52530 1.54451 1.54916 1.80597 2.04354 2.15844 2.20994 2.81424 3.47656 3.68861 3.79826 4.07524 4.15387 4.19036 4.27085 4.68932 4.75912 4.82164 4.88959 4.94086 5.06345 5.19130 5.22078 5.44155 5.59734 5.76183 5.89986 6.08503 6.19330 6.46109 6.55674 6.76829 6.82658 6.84911 7.25264 7.80033 8.29276 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038622 B = 0.003836 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.795341 B = 7297.204338 C = 7821.667149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.039 3.961 3 Si 0.990 3.010 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.487 4.487 8 H 0.083 0.917 9 C 0.115 3.885 10 C -0.294 4.294 11 C 0.109 3.891 12 N -0.580 5.580 13 C 0.332 3.668 14 N -0.648 5.648 15 C 0.477 3.523 16 O -0.507 6.507 17 C 0.123 3.877 18 N -0.375 5.375 19 C 0.055 3.945 20 C -0.283 4.283 21 C 0.025 3.975 22 N -0.330 5.330 23 C -0.250 4.250 24 H 0.292 0.708 25 H 0.116 0.884 26 H 0.145 0.855 27 H 0.427 0.573 28 H 0.138 0.862 29 H 0.175 0.825 30 H 0.217 0.783 31 H 0.173 0.827 32 H 0.198 0.802 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 -2.806 10.941 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.178 4.178 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.518 4.518 8 H 0.101 0.899 9 C 0.106 3.894 10 C -0.318 4.318 11 C -0.044 4.044 12 N -0.300 5.300 13 C 0.106 3.894 14 N -0.297 5.297 15 C 0.262 3.738 16 O -0.377 6.377 17 C -0.001 4.001 18 N -0.158 5.158 19 C -0.090 4.090 20 C -0.312 4.312 21 C -0.161 4.161 22 N -0.151 5.151 23 C -0.276 4.276 24 H 0.103 0.897 25 H 0.134 0.866 26 H 0.162 0.838 27 H 0.266 0.734 28 H 0.156 0.844 29 H 0.192 0.808 30 H 0.233 0.767 31 H 0.191 0.809 32 H 0.215 0.785 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.944 -3.420 9.701 13.631 hybrid contribution 0.683 1.211 0.190 1.403 sum -8.261 -2.210 9.891 13.075 Atomic orbital electron populations 1.69771 1.08840 1.30941 1.34866 1.26786 0.95711 1.04414 0.90858 0.85128 0.78646 0.75190 0.80008 1.18772 1.18938 1.18275 1.19830 0.96197 0.90939 1.44856 0.89927 1.18012 0.91145 0.93152 0.87049 1.22132 1.05234 0.94510 1.09906 1.22171 0.90497 0.97454 0.94314 1.67345 1.16292 1.29100 1.17215 1.18444 0.87877 0.90297 0.92769 1.43351 1.23740 1.10288 1.52306 1.21625 0.85922 0.83325 0.82976 1.90841 1.62233 1.35293 1.49344 1.21742 0.95073 0.79585 1.03729 1.48312 1.52402 1.10532 1.04553 1.23311 0.99841 0.93248 0.92561 1.21883 1.15021 0.98843 0.95478 1.24417 0.99423 0.96621 0.95687 1.77476 1.21361 1.02847 1.13369 1.21589 1.01811 0.95681 1.08471 0.89702 0.86639 0.83762 0.73415 0.84391 0.80783 0.76676 0.80921 0.78542 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.39 10.83 21.84 0.24 -39.15 16 2 C 0.04 1.82 5.30 85.29 0.45 2.27 16 3 Si 0.99 35.42 29.57 68.60 2.03 37.45 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -8.88 7.11 99.48 0.71 -8.18 16 6 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 7 C -0.49 -25.08 9.13 23.52 0.21 -24.86 16 8 H 0.08 4.07 7.87 -2.91 -0.02 4.05 16 9 C 0.11 6.11 5.58 -21.11 -0.12 6.00 16 10 C -0.29 -14.81 9.90 22.84 0.23 -14.59 16 11 C 0.11 5.44 11.15 84.50 0.94 6.38 16 12 N -0.58 -30.54 7.85 -193.53 -1.52 -32.06 16 13 C 0.33 16.15 7.42 132.75 0.98 17.13 16 14 N -0.65 -23.91 5.39 -308.67 -1.66 -25.58 16 15 C 0.48 17.26 7.82 87.66 0.69 17.94 16 16 O -0.51 -24.41 13.95 -3.01 -0.04 -24.46 16 17 C 0.12 2.72 6.99 85.64 0.60 3.32 16 18 N -0.37 -10.20 3.40 -351.82 -1.20 -11.40 16 19 C 0.05 1.10 11.45 83.54 0.96 2.06 16 20 C -0.28 -6.00 10.80 21.99 0.24 -5.76 16 21 C 0.02 0.67 12.02 85.24 1.02 1.70 16 22 N -0.33 -11.31 11.63 -57.03 -0.66 -11.97 16 23 C -0.25 -12.67 8.59 22.98 0.20 -12.47 16 24 H 0.29 12.56 8.29 -92.71 -0.77 11.79 16 25 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 26 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 27 H 0.43 11.84 8.70 -92.71 -0.81 11.03 16 28 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.17 1.96 8.07 -2.39 -0.02 1.94 16 30 H 0.22 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.20 4.10 8.06 -2.91 -0.02 4.08 16 33 H 0.13 6.41 6.27 -2.91 -0.02 6.39 16 Total: -1.00 -79.34 297.73 3.93 -75.41 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.35 Total: 32.64 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 6.40 Total: -0.89 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -4.81 Total: -120.16 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.04 Total: -24.46 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Total: -79.34 3.93 -75.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532434686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.141 kcal (2) G-P(sol) polarization free energy of solvation -79.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds