Wall clock time and date at job start Mon Mar 30 2020 01:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34258 * 125.75746 * 2 1 4 4 C 1.38063 * 107.41509 * 180.12720 * 3 2 1 5 5 C 1.47393 * 126.41528 * 179.84042 * 4 3 2 6 6 O 1.21598 * 120.00377 * 359.71046 * 5 4 3 7 7 N 1.34780 * 119.99847 * 179.97438 * 5 4 3 8 8 C 1.39396 * 120.00340 * 174.69498 * 7 5 4 9 9 C 1.38618 * 119.58291 * 185.37484 * 8 7 5 10 10 C 1.40805 * 118.78924 * 179.97438 * 9 8 7 11 11 C 1.41544 * 120.98895 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99809 * 151.70097 * 11 10 9 13 13 C 1.40034 * 120.00423 * 331.69655 * 11 10 9 14 14 N 1.30738 * 119.99549 * 350.19037 * 13 11 10 15 15 Si 1.86799 * 120.00073 * 170.19217 * 13 11 10 16 16 H 1.48500 * 109.47053 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47083 * 120.00210 * 15 13 11 18 18 H 1.48506 * 109.46824 * 240.00189 * 15 13 11 19 19 C 1.41176 * 118.01289 * 359.97438 * 10 9 8 20 20 C 1.37582 * 119.01966 * 0.02562 * 19 10 9 21 21 N 1.32090 * 121.11239 * 359.74643 * 20 19 10 22 22 C 1.41295 * 107.16361 * 359.57340 * 4 3 2 23 23 N 1.30449 * 108.02665 * 0.26244 * 22 4 3 24 24 H 1.09009 * 109.47052 * 270.33425 * 1 2 3 25 25 H 1.09002 * 109.47343 * 30.32320 * 1 2 3 26 26 H 1.08995 * 109.47611 * 150.33356 * 1 2 3 27 27 H 1.08009 * 126.28972 * 0.02562 * 3 2 1 28 28 H 0.97002 * 119.99832 * 354.69791 * 7 5 4 29 29 H 1.07994 * 120.60778 * 359.97438 * 9 8 7 30 30 H 0.97007 * 119.99978 * 179.97438 * 14 13 11 31 31 H 1.07997 * 120.48886 * 180.02562 * 19 10 9 32 32 H 1.08003 * 119.44475 * 179.97438 * 20 19 10 33 33 H 1.08004 * 125.99208 * 180.24499 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5600 0.6550 -0.0029 5 6 4.7638 1.5055 -0.0073 6 8 4.6528 2.7164 -0.0139 7 7 5.9877 0.9411 -0.0093 8 6 7.1238 1.7405 -0.1250 9 6 8.3706 1.1454 -0.2388 10 6 9.5068 1.9687 -0.3553 11 6 10.8022 1.4106 -0.4735 12 1 11.5769 1.9502 -0.9982 13 6 11.0795 0.1590 0.0899 14 7 10.2094 -0.4074 0.8845 15 14 12.6926 -0.7014 -0.2938 16 1 13.4976 0.1431 -1.2125 17 1 13.4475 -0.9224 0.9657 18 1 12.4145 -2.0091 -0.9403 19 6 9.3154 3.3675 -0.3507 20 6 8.0385 3.8660 -0.2331 21 7 6.9976 3.0593 -0.1304 22 6 3.5310 -0.7576 0.0053 23 7 2.2825 -1.1357 0.0070 24 1 -0.3634 0.0060 1.0277 25 1 -0.3634 0.8871 -0.5188 26 1 -0.3634 -0.8929 -0.5086 27 1 1.9166 2.1170 0.0004 28 1 6.0780 -0.0215 0.0698 29 1 8.4686 0.0699 -0.2380 30 1 10.4012 -1.2746 1.2745 31 1 10.1589 4.0362 -0.4382 32 1 7.8842 4.9349 -0.2284 33 1 4.3916 -1.4101 0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532434947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:57 Heat of formation + Delta-G solvation = 83.401868 kcal Electronic energy + Delta-G solvation = -19476.078832 eV Core-core repulsion = 16310.878342 eV Total energy + Delta-G solvation = -3165.200490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.31774 -39.22339 -37.52660 -34.26034 -33.78631 -33.33155 -30.57429 -30.27736 -28.69350 -26.99120 -25.94472 -23.17677 -21.90149 -21.30998 -20.69439 -19.51355 -17.84757 -17.55823 -16.05873 -15.72106 -15.43804 -15.16276 -14.56194 -14.29282 -14.17285 -13.94421 -13.69554 -13.02014 -12.90185 -12.78324 -12.63975 -12.54668 -12.18347 -11.40643 -11.17757 -11.07898 -10.88722 -10.24134 -10.09411 -9.67973 -9.64681 -9.35741 -9.34675 -8.65353 -7.92252 -7.69364 -6.98346 -6.71905 -4.59108 1.57812 2.20928 2.26957 2.78541 2.84470 3.04701 3.09987 3.27257 3.77597 3.88905 4.01365 4.35896 4.73784 4.74186 4.84869 4.90531 5.10627 5.27554 5.44154 5.67256 5.73027 6.08621 6.37426 6.62834 6.70818 6.73652 6.83762 6.99937 7.15378 7.41989 7.47734 7.51111 7.84347 8.00672 8.27070 8.47118 8.74466 8.79328 8.98858 9.72327 10.14322 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027047 B = 0.004194 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.983651 B = 6674.691583 C = 7631.011327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.370 5.370 3 C 0.121 3.879 4 C -0.282 4.282 5 C 0.578 3.422 6 O -0.492 6.492 7 N -0.653 5.653 8 C 0.338 3.662 9 C -0.236 4.236 10 C 0.144 3.856 11 C -0.457 4.457 12 H 0.081 0.919 13 C 0.076 3.924 14 N -0.796 5.796 15 Si 0.913 3.087 16 H -0.260 1.260 17 H -0.274 1.274 18 H -0.272 1.272 19 C -0.282 4.282 20 C 0.117 3.883 21 N -0.551 5.551 22 C 0.081 3.919 23 N -0.302 5.302 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.188 0.812 28 H 0.407 0.593 29 H 0.130 0.870 30 H 0.280 0.720 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.200 -3.416 -1.023 13.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.150 5.150 3 C -0.029 4.029 4 C -0.297 4.297 5 C 0.364 3.636 6 O -0.364 6.364 7 N -0.298 5.298 8 C 0.113 3.887 9 C -0.262 4.262 10 C 0.135 3.865 11 C -0.489 4.489 12 H 0.099 0.901 13 C -0.142 4.142 14 N -0.423 5.423 15 Si 0.738 3.262 16 H -0.184 1.184 17 H -0.199 1.199 18 H -0.197 1.197 19 C -0.305 4.305 20 C -0.038 4.038 21 N -0.270 5.270 22 C -0.107 4.107 23 N -0.123 5.123 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.205 0.795 28 H 0.242 0.758 29 H 0.147 0.853 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -15.213 -3.396 -0.822 15.609 hybrid contribution 2.170 -0.699 -0.022 2.280 sum -13.043 -4.095 -0.844 13.697 Atomic orbital electron populations 1.21938 0.73764 1.04797 1.03698 1.48373 1.07059 1.03941 1.55581 1.22943 0.90109 0.93617 0.96257 1.20497 0.93842 0.93560 1.21835 1.17298 0.81879 0.87261 0.77189 1.90840 1.85870 1.13376 1.46280 1.43183 1.04342 1.10008 1.72254 1.18181 0.84637 0.88665 0.97185 1.21600 0.89598 1.01019 1.13946 1.17584 0.92934 0.90288 0.85668 1.19590 0.96225 1.01650 1.31422 0.90062 1.25925 0.98737 0.96774 0.92760 1.69755 1.35204 1.15382 1.21933 0.86175 0.81379 0.79453 0.79206 1.18409 1.19937 1.19723 1.21944 0.96901 0.95985 1.15714 1.21776 0.88227 0.97442 0.96335 1.67245 1.33630 1.02454 1.23640 1.24137 0.95279 0.94166 0.97117 1.77138 1.01990 1.07812 1.25327 0.90414 0.89139 0.89028 0.79498 0.75842 0.85259 0.90892 0.87972 0.85882 0.79217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.44 59.85 0.68 1.30 16 2 N -0.37 -4.22 3.98 -67.59 -0.27 -4.49 16 3 C 0.12 1.55 11.30 -16.55 -0.19 1.36 16 4 C -0.28 -4.36 6.13 -105.07 -0.64 -5.00 16 5 C 0.58 11.45 7.77 -12.53 -0.10 11.35 16 6 O -0.49 -11.53 15.15 5.28 0.08 -11.45 16 7 N -0.65 -13.18 5.37 -12.48 -0.07 -13.25 16 8 C 0.34 8.31 7.41 -154.75 -1.15 7.16 16 9 C -0.24 -6.01 8.59 -38.47 -0.33 -6.34 16 10 C 0.14 3.79 5.58 -106.55 -0.59 3.20 16 11 C -0.46 -11.79 9.13 -37.65 -0.34 -12.13 16 12 H 0.08 2.01 7.87 -52.48 -0.41 1.60 16 13 C 0.08 1.84 5.30 -17.34 -0.09 1.74 16 14 N -0.80 -19.68 10.83 55.55 0.60 -19.08 16 15 Si 0.91 18.05 29.57 -169.99 -5.03 13.03 16 16 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 17 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 C -0.28 -6.95 9.90 -38.71 -0.38 -7.33 16 20 C 0.12 2.82 11.15 -17.68 -0.20 2.63 16 21 N -0.55 -14.22 7.85 -12.53 -0.10 -14.32 16 22 C 0.08 1.09 11.51 -16.98 -0.20 0.89 16 23 N -0.30 -4.09 12.50 30.86 0.39 -3.70 16 24 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.19 1.96 8.06 -52.48 -0.42 1.54 16 28 H 0.41 6.77 7.67 -40.82 -0.31 6.46 16 29 H 0.13 3.26 6.27 -52.49 -0.33 2.93 16 30 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 31 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 32 H 0.12 2.59 8.06 -52.48 -0.42 2.17 16 33 H 0.19 2.03 7.51 -52.48 -0.39 1.63 16 LS Contribution 297.97 15.07 4.49 4.49 Total: -1.00 -33.86 297.97 -6.55 -40.41 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -3.12 Total: 9.55 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -3.53 Total: -1.18 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.55 Total: -54.84 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.86 -6.55 -40.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532434947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.808 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds