Wall clock time and date at job start Mon Mar 30 2020 01:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34258 * 125.75746 * 2 1 4 4 C 1.38063 * 107.41509 * 180.12720 * 3 2 1 5 5 C 1.47393 * 126.41528 * 179.84042 * 4 3 2 6 6 O 1.21598 * 120.00377 * 359.71046 * 5 4 3 7 7 N 1.34780 * 119.99847 * 179.97438 * 5 4 3 8 8 C 1.39396 * 120.00340 * 174.69498 * 7 5 4 9 9 C 1.38618 * 119.58291 * 185.37484 * 8 7 5 10 10 C 1.40805 * 118.78924 * 179.97438 * 9 8 7 11 11 C 1.41544 * 120.98895 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99809 * 151.70097 * 11 10 9 13 13 C 1.40034 * 120.00423 * 331.69655 * 11 10 9 14 14 N 1.30738 * 119.99549 * 350.19037 * 13 11 10 15 15 Si 1.86799 * 120.00073 * 170.19217 * 13 11 10 16 16 H 1.48500 * 109.47053 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47083 * 120.00210 * 15 13 11 18 18 H 1.48506 * 109.46824 * 240.00189 * 15 13 11 19 19 C 1.41176 * 118.01289 * 359.97438 * 10 9 8 20 20 C 1.37582 * 119.01966 * 0.02562 * 19 10 9 21 21 N 1.32090 * 121.11239 * 359.74643 * 20 19 10 22 22 C 1.41295 * 107.16361 * 359.57340 * 4 3 2 23 23 N 1.30449 * 108.02665 * 0.26244 * 22 4 3 24 24 H 1.09009 * 109.47052 * 270.33425 * 1 2 3 25 25 H 1.09002 * 109.47343 * 30.32320 * 1 2 3 26 26 H 1.08995 * 109.47611 * 150.33356 * 1 2 3 27 27 H 1.08009 * 126.28972 * 0.02562 * 3 2 1 28 28 H 0.97002 * 119.99832 * 354.69791 * 7 5 4 29 29 H 1.07994 * 120.60778 * 359.97438 * 9 8 7 30 30 H 0.97007 * 119.99978 * 179.97438 * 14 13 11 31 31 H 1.07997 * 120.48886 * 180.02562 * 19 10 9 32 32 H 1.08003 * 119.44475 * 179.97438 * 20 19 10 33 33 H 1.08004 * 125.99208 * 180.24499 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5600 0.6550 -0.0029 5 6 4.7638 1.5055 -0.0073 6 8 4.6528 2.7164 -0.0139 7 7 5.9877 0.9411 -0.0093 8 6 7.1238 1.7405 -0.1250 9 6 8.3706 1.1454 -0.2388 10 6 9.5068 1.9687 -0.3553 11 6 10.8022 1.4106 -0.4735 12 1 11.5769 1.9502 -0.9982 13 6 11.0795 0.1590 0.0899 14 7 10.2094 -0.4074 0.8845 15 14 12.6926 -0.7014 -0.2938 16 1 13.4976 0.1431 -1.2125 17 1 13.4475 -0.9224 0.9657 18 1 12.4145 -2.0091 -0.9403 19 6 9.3154 3.3675 -0.3507 20 6 8.0385 3.8660 -0.2331 21 7 6.9976 3.0593 -0.1304 22 6 3.5310 -0.7576 0.0053 23 7 2.2825 -1.1357 0.0070 24 1 -0.3634 0.0060 1.0277 25 1 -0.3634 0.8871 -0.5188 26 1 -0.3634 -0.8929 -0.5086 27 1 1.9166 2.1170 0.0004 28 1 6.0780 -0.0215 0.0698 29 1 8.4686 0.0699 -0.2380 30 1 10.4012 -1.2746 1.2745 31 1 10.1589 4.0362 -0.4382 32 1 7.8842 4.9349 -0.2284 33 1 4.3916 -1.4101 0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532434947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:56 Heat of formation + Delta-G solvation = 61.034494 kcal Electronic energy + Delta-G solvation = -19477.048754 eV Core-core repulsion = 16310.878342 eV Total energy + Delta-G solvation = -3166.170412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.36976 -40.91427 -39.26569 -36.06839 -35.45696 -34.30541 -32.43360 -31.51538 -30.31387 -27.95727 -27.80677 -24.56539 -23.78050 -22.68234 -21.86376 -21.00040 -19.38658 -19.11753 -17.61649 -17.01416 -16.74984 -16.64469 -16.03343 -15.79493 -15.69479 -15.49344 -15.18608 -14.49162 -14.32261 -14.16854 -13.87269 -13.48552 -13.43289 -13.13662 -12.85663 -12.67567 -12.21491 -12.00824 -11.84290 -11.44520 -11.15105 -10.96856 -10.58605 -9.88152 -9.74812 -9.57988 -8.81855 -8.55547 -6.54542 0.43892 0.86280 1.02679 1.23540 1.43681 1.44018 1.58206 1.59122 2.23128 2.27765 2.52387 2.89071 3.45841 3.77147 3.81339 3.98179 4.15525 4.27012 4.43957 4.56949 4.67116 4.70908 4.83434 4.88761 4.96406 5.12404 5.26921 5.35961 5.51105 5.68690 5.86704 5.96014 6.18589 6.45670 6.54653 6.64688 6.82788 6.87600 7.37599 7.86542 8.33611 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027047 B = 0.004194 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.983651 B = 6674.691583 C = 7631.011327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.360 5.360 3 C 0.137 3.863 4 C -0.314 4.314 5 C 0.579 3.421 6 O -0.535 6.535 7 N -0.648 5.648 8 C 0.335 3.665 9 C -0.253 4.253 10 C 0.115 3.885 11 C -0.486 4.486 12 H 0.083 0.917 13 C 0.037 3.963 14 N -0.820 5.820 15 Si 0.989 3.011 16 H -0.259 1.259 17 H -0.267 1.267 18 H -0.262 1.262 19 C -0.296 4.296 20 C 0.112 3.888 21 N -0.575 5.575 22 C 0.083 3.917 23 N -0.319 5.319 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.210 0.790 28 H 0.420 0.580 29 H 0.126 0.874 30 H 0.291 0.709 31 H 0.117 0.883 32 H 0.152 0.848 33 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.035 -4.437 -1.086 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.138 5.138 3 C -0.016 4.016 4 C -0.330 4.330 5 C 0.368 3.632 6 O -0.410 6.410 7 N -0.294 5.294 8 C 0.109 3.891 9 C -0.278 4.278 10 C 0.107 3.893 11 C -0.517 4.517 12 H 0.101 0.899 13 C -0.179 4.179 14 N -0.446 5.446 15 Si 0.810 3.190 16 H -0.183 1.183 17 H -0.192 1.192 18 H -0.187 1.187 19 C -0.319 4.319 20 C -0.042 4.042 21 N -0.295 5.295 22 C -0.104 4.104 23 N -0.140 5.140 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.119 0.881 27 H 0.227 0.773 28 H 0.258 0.742 29 H 0.144 0.856 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.169 0.831 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -16.104 -4.463 -0.879 16.734 hybrid contribution 2.274 -0.384 0.030 2.306 sum -13.830 -4.847 -0.850 14.679 Atomic orbital electron populations 1.22426 0.70623 1.06740 1.05465 1.48798 1.08694 1.02912 1.53418 1.23264 0.89441 0.94848 0.94084 1.20192 0.93056 0.94005 1.25707 1.17850 0.82510 0.87237 0.75613 1.90800 1.86459 1.15330 1.48439 1.43192 1.03732 1.10480 1.71979 1.18430 0.85780 0.88809 0.96129 1.21577 0.90025 1.00759 1.15460 1.18017 0.93745 0.91365 0.86219 1.19867 0.96235 1.03117 1.32504 0.89928 1.26791 1.02403 0.96745 0.91938 1.69794 1.36973 1.15961 1.21856 0.85044 0.76628 0.78242 0.79097 1.18250 1.19218 1.18698 1.22136 0.97726 0.95797 1.16266 1.22249 0.87899 0.98761 0.95282 1.67373 1.34283 1.03098 1.24718 1.24406 0.96066 0.93542 0.96348 1.77115 1.02073 1.08950 1.25837 0.88693 0.86286 0.88104 0.77339 0.74194 0.85644 0.89845 0.86526 0.83113 0.77435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 11.44 127.77 1.46 2.24 16 2 N -0.36 -7.30 3.98 -367.75 -1.46 -8.77 16 3 C 0.14 3.24 11.30 84.28 0.95 4.19 16 4 C -0.31 -9.48 6.13 -20.16 -0.12 -9.60 16 5 C 0.58 23.15 7.77 86.65 0.67 23.82 16 6 O -0.54 -25.48 15.15 -4.02 -0.06 -25.54 16 7 N -0.65 -26.62 5.37 -311.65 -1.67 -28.30 16 8 C 0.33 16.83 7.41 132.78 0.98 17.81 16 9 C -0.25 -13.22 8.59 22.99 0.20 -13.02 16 10 C 0.11 6.20 5.58 -21.11 -0.12 6.09 16 11 C -0.49 -25.41 9.13 23.52 0.21 -25.19 16 12 H 0.08 4.14 7.87 -2.91 -0.02 4.12 16 13 C 0.04 1.79 5.30 85.29 0.45 2.24 16 14 N -0.82 -40.56 10.83 21.84 0.24 -40.32 16 15 Si 0.99 36.39 29.57 68.60 2.03 38.42 16 16 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 17 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 18 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 19 C -0.30 -14.84 9.90 22.84 0.23 -14.61 16 20 C 0.11 5.48 11.15 84.50 0.94 6.42 16 21 N -0.57 -30.23 7.85 -193.56 -1.52 -31.75 16 22 C 0.08 2.16 11.51 85.65 0.99 3.14 16 23 N -0.32 -8.05 12.50 -56.27 -0.70 -8.75 16 24 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 25 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.21 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.42 14.22 7.67 -92.71 -0.71 13.51 16 29 H 0.13 6.51 6.27 -2.91 -0.02 6.49 16 30 H 0.29 12.84 8.29 -92.70 -0.77 12.07 16 31 H 0.12 5.33 8.06 -2.91 -0.02 5.30 16 32 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 33 H 0.21 4.24 7.51 -2.91 -0.02 4.21 16 Total: -1.00 -73.93 297.97 4.14 -69.79 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.45 Total: 31.69 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.85 Total: 3.53 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -5.12 Total: -117.89 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -73.93 4.14 -69.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532434947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.824 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds