Wall clock time and date at job start Mon Mar 30 2020 01:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35848 * 126.13439 * 2 1 4 4 N 1.30171 * 109.00605 * 179.81898 * 3 2 1 5 5 C 1.35769 * 108.86778 * 0.44727 * 4 3 2 6 6 C 1.47281 * 126.23372 * 179.69897 * 5 4 3 7 7 O 1.21631 * 119.99361 * 180.02562 * 6 5 4 8 8 N 1.34768 * 120.00362 * 0.02562 * 6 5 4 9 9 C 1.39391 * 120.00175 * 175.13705 * 8 6 5 10 10 C 1.38620 * 119.58545 * 184.94511 * 9 8 6 11 11 C 1.40799 * 118.79409 * 179.77733 * 10 9 8 12 12 C 1.41546 * 120.99408 * 180.23895 * 11 10 9 13 13 H 1.08002 * 119.99736 * 203.88354 * 12 11 10 14 14 C 1.40027 * 119.99992 * 23.89716 * 12 11 10 15 15 N 1.30742 * 120.00140 * 16.85206 * 14 12 11 16 16 Si 1.86803 * 120.00012 * 196.85398 * 14 12 11 17 17 H 1.48501 * 109.47101 * 59.99542 * 16 14 12 18 18 H 1.48499 * 109.47059 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47111 * 299.99902 * 16 14 12 20 20 C 1.41179 * 118.01041 * 0.49280 * 11 10 9 21 21 C 1.37591 * 119.01671 * 359.75178 * 20 11 10 22 22 N 1.32082 * 121.11522 * 359.97438 * 21 20 11 23 23 C 1.35378 * 126.13040 * 180.31410 * 2 1 3 24 24 H 1.08996 * 109.47339 * 269.68752 * 1 2 3 25 25 H 1.09001 * 109.47303 * 29.68704 * 1 2 3 26 26 H 1.08999 * 109.47695 * 149.68751 * 1 2 3 27 27 H 1.07997 * 125.49773 * 0.02562 * 3 2 1 28 28 H 0.96997 * 120.00621 * 355.14552 * 8 6 5 29 29 H 1.08003 * 120.59858 * 0.02562 * 10 9 8 30 30 H 0.97005 * 120.00036 * 180.02562 * 15 14 12 31 31 H 1.07997 * 120.49201 * 179.77219 * 20 11 10 32 32 H 1.07996 * 119.43946 * 180.02562 * 21 20 11 33 33 H 1.08002 * 126.56685 * 359.97432 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5100 0.7138 0.0039 5 6 3.5513 -0.6433 -0.0035 6 6 4.7652 -1.4773 -0.0085 7 8 4.6697 -2.6898 -0.0156 8 7 5.9815 -0.8970 -0.0053 9 6 7.1285 -1.6831 0.0923 10 6 8.3690 -1.0736 0.1985 11 6 9.5161 -1.8836 0.3009 12 6 10.8051 -1.3104 0.4166 13 1 11.6756 -1.8736 0.1141 14 6 10.9517 -0.0133 0.9234 15 7 9.9730 0.5434 1.5879 16 14 12.5456 0.9217 0.6501 17 1 12.7849 1.0767 -0.8073 18 1 12.4473 2.2626 1.2806 19 1 13.6717 0.1691 1.2592 20 6 9.3426 -3.2845 0.2793 21 6 8.0711 -3.7979 0.1653 22 7 7.0196 -3.0034 0.0772 23 6 2.2632 -1.0934 -0.0060 24 1 -0.3634 -0.0056 1.0276 25 1 -0.3634 0.8928 -0.5090 26 1 -0.3634 -0.8871 -0.5187 27 1 1.9257 2.1221 0.0004 28 1 6.0590 0.0676 -0.0708 29 1 8.4535 0.0031 0.2066 30 1 10.0744 1.4421 1.9387 31 1 10.1952 -3.9434 0.3515 32 1 7.9305 -4.8685 0.1485 33 1 1.9420 -2.1245 -0.0113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535423420.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:09 Heat of formation + Delta-G solvation = 68.142267 kcal Electronic energy + Delta-G solvation = -19502.258713 eV Core-core repulsion = 16336.396518 eV Total energy + Delta-G solvation = -3165.862196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.13856 -39.20844 -37.50396 -34.26886 -34.17969 -33.51576 -30.48091 -29.81447 -28.64079 -27.20095 -25.90602 -23.47836 -21.84899 -21.36535 -20.79060 -19.43844 -17.83953 -17.49362 -16.14706 -15.96265 -15.49961 -15.14312 -14.44853 -14.29692 -14.11722 -13.94368 -13.72110 -13.34561 -13.07792 -13.04774 -12.67825 -12.52046 -12.11225 -11.38298 -11.15162 -10.82400 -10.28292 -10.21540 -10.08998 -9.83217 -9.61799 -9.42708 -9.24904 -8.59563 -7.91886 -7.64208 -6.91356 -6.71812 -4.53130 1.69497 2.44629 2.53185 2.86352 2.95754 3.06285 3.09076 3.34385 3.84926 3.91041 4.10154 4.39186 4.50286 4.70518 4.74696 4.76667 5.00339 5.27087 5.50708 5.78149 5.95668 6.08534 6.45797 6.68668 6.78812 6.88464 6.95712 7.05482 7.19338 7.48905 7.56275 7.74213 7.91550 8.09564 8.34654 8.51291 8.79820 8.82520 9.03824 9.79537 10.14487 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.004265 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.855563 B = 6563.702730 C = 7545.679531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.465 5.465 3 C 0.179 3.821 4 N -0.462 5.462 5 C -0.051 4.051 6 C 0.587 3.413 7 O -0.487 6.487 8 N -0.643 5.643 9 C 0.339 3.661 10 C -0.242 4.242 11 C 0.144 3.856 12 C -0.457 4.457 13 H 0.082 0.918 14 C 0.078 3.922 15 N -0.786 5.786 16 Si 0.911 3.089 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.287 4.287 21 C 0.119 3.881 22 N -0.555 5.555 23 C 0.025 3.975 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.210 0.790 28 H 0.415 0.585 29 H 0.128 0.872 30 H 0.283 0.717 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.755 4.647 -2.180 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.148 5.148 3 C -0.104 4.104 4 N -0.181 5.181 5 C -0.180 4.180 6 C 0.371 3.629 7 O -0.358 6.358 8 N -0.287 5.287 9 C 0.114 3.886 10 C -0.267 4.267 11 C 0.136 3.864 12 C -0.488 4.488 13 H 0.100 0.900 14 C -0.141 4.141 15 N -0.411 5.411 16 Si 0.736 3.264 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.189 1.189 20 C -0.311 4.311 21 C -0.036 4.036 22 N -0.275 5.275 23 C -0.113 4.113 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.227 0.773 28 H 0.251 0.749 29 H 0.146 0.854 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.240 4.134 -2.101 16.890 hybrid contribution 0.766 1.012 0.105 1.274 sum -15.475 5.146 -1.996 16.429 Atomic orbital electron populations 1.22096 0.76133 1.04925 1.03865 1.45317 1.08026 1.06989 1.54454 1.25178 0.85294 0.93484 1.06459 1.70649 1.19392 1.10715 1.17379 1.20876 0.93574 0.90330 1.13271 1.16996 0.81695 0.86696 0.77510 1.90868 1.85856 1.12581 1.46534 1.43197 1.03973 1.10498 1.71070 1.18195 0.84606 0.88734 0.97061 1.21549 0.90172 1.00880 1.14109 1.17547 0.92932 0.90379 0.85566 1.19533 0.93314 0.98495 1.37476 0.90033 1.25959 0.98374 0.97515 0.92269 1.69781 1.32834 1.14811 1.23646 0.86320 0.81742 0.78516 0.79865 1.18732 1.20273 1.18939 1.21873 0.96882 0.95799 1.16527 1.21753 0.88186 0.97437 0.96180 1.67240 1.33284 1.02760 1.24190 1.22578 0.90211 0.93089 1.05373 0.90257 0.89194 0.89398 0.77347 0.74875 0.85418 0.90628 0.88048 0.85926 0.79507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.15 59.85 0.67 0.98 16 2 N -0.46 -4.56 3.13 -125.77 -0.39 -4.95 16 3 C 0.18 1.97 12.55 -89.91 -1.13 0.85 16 4 N -0.46 -7.29 11.01 -11.04 -0.12 -7.41 16 5 C -0.05 -0.89 6.98 -83.10 -0.58 -1.47 16 6 C 0.59 12.79 7.77 -12.59 -0.10 12.69 16 7 O -0.49 -11.98 15.13 5.25 0.08 -11.91 16 8 N -0.64 -14.59 5.38 -12.51 -0.07 -14.66 16 9 C 0.34 8.85 7.41 -154.76 -1.15 7.70 16 10 C -0.24 -6.50 8.62 -38.47 -0.33 -6.83 16 11 C 0.14 3.94 5.60 -106.55 -0.60 3.34 16 12 C -0.46 -12.12 9.12 -37.65 -0.34 -12.46 16 13 H 0.08 2.06 7.90 -52.49 -0.41 1.64 16 14 C 0.08 1.95 5.20 -17.35 -0.09 1.86 16 15 N -0.79 -20.14 10.93 55.55 0.61 -19.53 16 16 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 17 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 18 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 C -0.29 -7.30 9.90 -38.70 -0.38 -7.69 16 21 C 0.12 2.97 11.15 -17.68 -0.20 2.78 16 22 N -0.56 -14.93 7.85 -12.53 -0.10 -15.03 16 23 C 0.03 0.34 11.26 -16.63 -0.19 0.15 16 24 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.21 1.34 8.06 -52.49 -0.42 0.91 16 28 H 0.42 8.56 8.41 -40.82 -0.34 8.21 16 29 H 0.13 3.43 6.20 -52.48 -0.33 3.11 16 30 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 31 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16 32 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 33 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -34.86 298.52 -8.12 -42.98 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -3.18 Total: 10.69 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -4.42 Total: 1.91 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.07 Total: -61.59 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.86 -8.12 -42.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535423420.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.126 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds