Wall clock time and date at job start Mon Mar 30 2020 01:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35848 * 126.13439 * 2 1 4 4 N 1.30171 * 109.00605 * 179.81898 * 3 2 1 5 5 C 1.35769 * 108.86778 * 0.44727 * 4 3 2 6 6 C 1.47281 * 126.23372 * 179.69897 * 5 4 3 7 7 O 1.21631 * 119.99361 * 180.02562 * 6 5 4 8 8 N 1.34768 * 120.00362 * 0.02562 * 6 5 4 9 9 C 1.39391 * 120.00175 * 175.13705 * 8 6 5 10 10 C 1.38620 * 119.58545 * 184.94511 * 9 8 6 11 11 C 1.40799 * 118.79409 * 179.77733 * 10 9 8 12 12 C 1.41546 * 120.99408 * 180.23895 * 11 10 9 13 13 H 1.08002 * 119.99736 * 203.88354 * 12 11 10 14 14 C 1.40027 * 119.99992 * 23.89716 * 12 11 10 15 15 N 1.30742 * 120.00140 * 16.85206 * 14 12 11 16 16 Si 1.86803 * 120.00012 * 196.85398 * 14 12 11 17 17 H 1.48501 * 109.47101 * 59.99542 * 16 14 12 18 18 H 1.48499 * 109.47059 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47111 * 299.99902 * 16 14 12 20 20 C 1.41179 * 118.01041 * 0.49280 * 11 10 9 21 21 C 1.37591 * 119.01671 * 359.75178 * 20 11 10 22 22 N 1.32082 * 121.11522 * 359.97438 * 21 20 11 23 23 C 1.35378 * 126.13040 * 180.31410 * 2 1 3 24 24 H 1.08996 * 109.47339 * 269.68752 * 1 2 3 25 25 H 1.09001 * 109.47303 * 29.68704 * 1 2 3 26 26 H 1.08999 * 109.47695 * 149.68751 * 1 2 3 27 27 H 1.07997 * 125.49773 * 0.02562 * 3 2 1 28 28 H 0.96997 * 120.00621 * 355.14552 * 8 6 5 29 29 H 1.08003 * 120.59858 * 0.02562 * 10 9 8 30 30 H 0.97005 * 120.00036 * 180.02562 * 15 14 12 31 31 H 1.07997 * 120.49201 * 179.77219 * 20 11 10 32 32 H 1.07996 * 119.43946 * 180.02562 * 21 20 11 33 33 H 1.08002 * 126.56685 * 359.97432 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5100 0.7138 0.0039 5 6 3.5513 -0.6433 -0.0035 6 6 4.7652 -1.4773 -0.0085 7 8 4.6697 -2.6898 -0.0156 8 7 5.9815 -0.8970 -0.0053 9 6 7.1285 -1.6831 0.0923 10 6 8.3690 -1.0736 0.1985 11 6 9.5161 -1.8836 0.3009 12 6 10.8051 -1.3104 0.4166 13 1 11.6756 -1.8736 0.1141 14 6 10.9517 -0.0133 0.9234 15 7 9.9730 0.5434 1.5879 16 14 12.5456 0.9217 0.6501 17 1 12.7849 1.0767 -0.8073 18 1 12.4473 2.2626 1.2806 19 1 13.6717 0.1691 1.2592 20 6 9.3426 -3.2845 0.2793 21 6 8.0711 -3.7979 0.1653 22 7 7.0196 -3.0034 0.0772 23 6 2.2632 -1.0934 -0.0060 24 1 -0.3634 -0.0056 1.0276 25 1 -0.3634 0.8928 -0.5090 26 1 -0.3634 -0.8871 -0.5187 27 1 1.9257 2.1221 0.0004 28 1 6.0590 0.0676 -0.0708 29 1 8.4535 0.0031 0.2066 30 1 10.0744 1.4421 1.9387 31 1 10.1952 -3.9434 0.3515 32 1 7.9305 -4.8685 0.1485 33 1 1.9420 -2.1245 -0.0113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535423420.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:08 Heat of formation + Delta-G solvation = 45.546584 kcal Electronic energy + Delta-G solvation = -19503.238535 eV Core-core repulsion = 16336.396518 eV Total energy + Delta-G solvation = -3166.842018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.12571 -41.02245 -39.34752 -36.12709 -35.52200 -34.94007 -32.47393 -31.06569 -30.27116 -28.01814 -27.86588 -24.89346 -23.82165 -22.72067 -22.00708 -21.02325 -19.41553 -19.05763 -17.64245 -17.16950 -16.86060 -16.84461 -16.06688 -15.87769 -15.71981 -15.44073 -14.88309 -14.79404 -14.46620 -14.35577 -14.19217 -13.58782 -13.41108 -13.18441 -12.91588 -12.63698 -12.08275 -11.94595 -11.49430 -11.37081 -11.14044 -11.10596 -10.70850 -9.96113 -9.68443 -9.62364 -8.84981 -8.63461 -6.56268 0.41940 0.94715 1.01703 1.41051 1.50910 1.53967 1.63789 1.74190 2.20544 2.28101 2.55348 2.85020 3.40196 3.75814 3.82186 4.00039 4.10509 4.27520 4.48905 4.53018 4.78099 4.78659 4.84704 4.93073 5.03760 5.08721 5.22001 5.41147 5.49307 5.65340 5.89927 6.07170 6.19676 6.45289 6.58635 6.78706 6.82627 6.86998 7.30400 7.82939 8.27065 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.004265 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.855563 B = 6563.702730 C = 7545.679531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.453 5.453 3 C 0.198 3.802 4 N -0.507 5.507 5 C -0.099 4.099 6 C 0.583 3.417 7 O -0.526 6.526 8 N -0.644 5.644 9 C 0.333 3.667 10 C -0.262 4.262 11 C 0.116 3.884 12 C -0.485 4.485 13 H 0.088 0.912 14 C 0.037 3.963 15 N -0.812 5.812 16 Si 0.991 3.009 17 H -0.259 1.259 18 H -0.266 1.266 19 H -0.257 1.257 20 C -0.299 4.299 21 C 0.115 3.885 22 N -0.579 5.579 23 C 0.046 3.954 24 H 0.095 0.905 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.257 0.743 28 H 0.421 0.579 29 H 0.120 0.880 30 H 0.292 0.708 31 H 0.119 0.881 32 H 0.154 0.846 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.149 6.176 -2.250 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.134 5.134 3 C -0.086 4.086 4 N -0.226 5.226 5 C -0.227 4.227 6 C 0.371 3.629 7 O -0.400 6.400 8 N -0.288 5.288 9 C 0.107 3.893 10 C -0.288 4.288 11 C 0.107 3.893 12 C -0.515 4.515 13 H 0.106 0.894 14 C -0.180 4.180 15 N -0.437 5.437 16 Si 0.811 3.189 17 H -0.183 1.183 18 H -0.190 1.190 19 H -0.181 1.181 20 C -0.323 4.323 21 C -0.039 4.039 22 N -0.300 5.300 23 C -0.096 4.096 24 H 0.113 0.887 25 H 0.138 0.862 26 H 0.119 0.881 27 H 0.273 0.727 28 H 0.258 0.742 29 H 0.137 0.863 30 H 0.103 0.897 31 H 0.137 0.863 32 H 0.171 0.829 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -17.690 5.679 -2.168 18.705 hybrid contribution 1.021 0.588 0.155 1.188 sum -16.670 6.267 -2.013 17.922 Atomic orbital electron populations 1.22560 0.72341 1.07164 1.05603 1.45635 1.10036 1.05426 1.52266 1.26064 0.84055 0.95370 1.03112 1.70536 1.22495 1.09958 1.19627 1.20347 0.92890 0.91183 1.18263 1.17651 0.82445 0.86907 0.75943 1.90812 1.86511 1.14294 1.48413 1.43266 1.03825 1.10557 1.71198 1.18456 0.85605 0.88986 0.96227 1.21509 0.90782 1.00457 1.16031 1.17991 0.93674 0.91511 0.86081 1.19873 0.93239 1.00012 1.38376 0.89426 1.26911 1.02246 0.97716 0.91130 1.69835 1.34930 1.15482 1.23501 0.85126 0.76773 0.77217 0.79830 1.18348 1.19030 1.18101 1.22084 0.97784 0.95517 1.16934 1.22276 0.87818 0.98831 0.94987 1.67365 1.34070 1.03164 1.25372 1.22741 0.89367 0.94626 1.02855 0.88682 0.86182 0.88124 0.72683 0.74218 0.86260 0.89663 0.86251 0.82853 0.78124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.27 11.15 127.77 1.42 1.69 16 2 N -0.45 -7.43 3.13 -551.83 -1.72 -9.16 16 3 C 0.20 3.79 12.55 180.10 2.26 6.05 16 4 N -0.51 -15.68 11.01 -188.83 -2.08 -17.76 16 5 C -0.10 -3.48 6.98 40.50 0.28 -3.20 16 6 C 0.58 26.50 7.77 86.62 0.67 27.17 16 7 O -0.53 -26.94 15.13 -4.13 -0.06 -27.00 16 8 N -0.64 -30.76 5.38 -311.74 -1.68 -32.44 16 9 C 0.33 18.20 7.41 132.78 0.98 19.19 16 10 C -0.26 -14.74 8.62 22.99 0.20 -14.54 16 11 C 0.12 6.53 5.60 -21.12 -0.12 6.41 16 12 C -0.48 -26.15 9.12 23.52 0.21 -25.93 16 13 H 0.09 4.46 7.90 -2.91 -0.02 4.44 16 14 C 0.04 1.86 5.20 85.29 0.44 2.31 16 15 N -0.81 -42.27 10.93 21.84 0.24 -42.03 16 16 Si 0.99 37.35 29.59 68.60 2.03 39.38 16 17 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 18 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 19 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 20 C -0.30 -15.60 9.90 22.84 0.23 -15.37 16 21 C 0.11 5.85 11.15 84.50 0.94 6.79 16 22 N -0.58 -32.25 7.85 -193.57 -1.52 -33.77 16 23 C 0.05 1.16 11.26 83.73 0.94 2.10 16 24 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.26 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.42 18.43 8.41 -92.71 -0.78 17.65 16 29 H 0.12 6.75 6.20 -2.91 -0.02 6.73 16 30 H 0.29 13.66 8.29 -92.70 -0.77 12.89 16 31 H 0.12 5.60 8.06 -2.91 -0.02 5.58 16 32 H 0.15 6.64 8.06 -2.91 -0.02 6.62 16 33 H 0.20 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -79.80 298.52 4.06 -75.74 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 0.38 Total: 34.36 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 8.47 Total: 12.68 kcal Atomic # 7 Polarization: -128.39 SS G_CDS: -6.76 Total: -135.15 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.06 Total: -27.00 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -79.80 4.06 -75.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535423420.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.289 kcal (2) G-P(sol) polarization free energy of solvation -79.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds