Wall clock time and date at job start Mon Mar 30 2020 01:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36965 * 119.99822 * 2 1 4 4 H 1.08000 * 119.99719 * 188.11918 * 3 2 1 5 5 C 1.38984 * 119.99908 * 8.12296 * 3 2 1 6 6 N 1.31403 * 120.00153 * 8.24650 * 5 3 2 7 7 Si 1.86801 * 119.99681 * 188.24759 * 5 3 2 8 8 H 1.48503 * 109.47341 * 59.99725 * 7 5 3 9 9 H 1.48500 * 109.47261 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47374 * 299.99808 * 7 5 3 11 11 C 1.34779 * 120.00272 * 180.02562 * 2 1 3 12 12 O 1.21644 * 120.00156 * 184.11717 * 11 2 1 13 13 C 1.47212 * 119.99745 * 4.11483 * 11 2 1 14 14 C 1.38030 * 126.81547 * 309.75677 * 13 11 2 15 15 N 1.34173 * 107.87291 * 179.71897 * 14 13 11 16 16 H 0.97003 * 125.15606 * 180.28646 * 15 14 13 17 17 N 1.39760 * 109.68174 * 0.26153 * 15 14 13 18 18 C 1.31356 * 109.10129 * 0.02562 * 17 15 14 19 19 C 1.48287 * 126.51836 * 180.02562 * 18 17 15 20 20 C 1.39818 * 120.53702 * 324.97631 * 19 18 17 21 21 C 1.38400 * 118.30755 * 179.97438 * 20 19 18 22 22 C 1.38322 * 119.28785 * 0.02562 * 21 20 19 23 23 N 1.31893 * 121.03886 * 0.02562 * 22 21 20 24 24 C 1.31741 * 121.85785 * 359.68591 * 23 22 21 25 25 H 1.08997 * 109.47154 * 174.15012 * 1 2 3 26 26 H 1.09000 * 109.47177 * 294.14516 * 1 2 3 27 27 H 1.09001 * 109.47339 * 54.14690 * 1 2 3 28 28 H 0.96998 * 119.99982 * 180.02562 * 6 5 3 29 29 H 1.08002 * 126.06194 * 359.97438 * 14 13 11 30 30 H 1.08002 * 120.84344 * 359.95704 * 20 19 18 31 31 H 1.07996 * 120.35883 * 180.02562 * 21 20 19 32 32 H 1.08002 * 119.48511 * 179.97438 * 22 21 20 33 33 H 1.07997 * 119.70801 * 180.29222 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1862 0.0000 4 1 3.2216 1.1908 -0.1321 5 6 1.4652 2.3837 0.1701 6 7 0.1912 2.3724 0.4916 7 14 2.3564 4.0095 -0.0585 8 1 2.8869 4.0929 -1.4431 9 1 1.4107 5.1299 0.1770 10 1 3.4802 4.0982 0.9082 11 6 2.1389 -1.1672 -0.0005 12 8 3.3530 -1.1686 0.0751 13 6 1.4057 -2.4404 -0.0926 14 6 0.3297 -2.8328 0.6778 15 7 -0.0445 -4.0551 0.2703 16 1 -0.7811 -4.5663 0.6407 17 7 0.7874 -4.4799 -0.7693 18 6 1.6756 -3.5448 -1.0185 19 6 2.7436 -3.5935 -2.0461 20 6 3.3810 -4.7999 -2.3516 21 6 4.3710 -4.7925 -3.3187 22 6 4.6955 -3.6031 -3.9458 23 7 4.0773 -2.4800 -3.6357 24 6 3.1251 -2.4387 -2.7262 25 1 -0.3633 -1.0223 -0.1047 26 1 -0.3633 0.4204 0.9377 27 1 -0.3634 0.6019 -0.8329 28 1 -0.2866 3.2082 0.6099 29 1 -0.1319 -2.2563 1.4658 30 1 3.1079 -5.7141 -1.8456 31 1 4.8847 -5.7056 -3.5809 32 1 5.4679 -3.5936 -4.7007 33 1 2.6386 -1.5007 -2.5029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541424773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:40 Heat of formation + Delta-G solvation = 72.063193 kcal Electronic energy + Delta-G solvation = -20355.253405 eV Core-core repulsion = 17189.561234 eV Total energy + Delta-G solvation = -3165.692171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.21071 -40.78072 -39.83136 -36.63333 -34.45165 -33.66205 -32.93048 -31.35867 -30.94919 -28.13177 -26.52496 -25.16687 -24.58453 -23.38986 -21.57773 -20.73052 -19.07270 -18.58593 -18.01187 -17.60106 -17.11615 -16.52743 -16.28730 -15.95379 -15.72527 -15.45501 -14.87726 -14.71971 -14.40700 -14.13980 -14.01383 -13.56007 -13.33131 -12.83093 -12.78398 -12.63202 -12.30365 -12.15147 -12.05258 -11.37850 -11.03447 -10.62904 -10.52470 -10.42028 -9.87588 -9.78509 -9.44005 -8.23593 -5.87848 -0.18434 0.30520 0.73305 1.27010 1.42020 1.46775 1.52101 1.78076 2.22770 2.30631 2.88240 3.04576 3.17134 3.35219 3.62435 3.73192 3.95093 4.00492 4.15313 4.25187 4.40463 4.55430 4.64743 4.68389 4.80611 5.04630 5.18270 5.21122 5.26591 5.46369 5.53810 5.73907 6.08015 6.25684 6.47435 6.54785 6.99950 7.19709 7.51102 8.08638 8.68306 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.006452 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.095685 B = 4338.685850 C = 5526.537896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.452 5.452 3 C -0.337 4.337 4 H 0.074 0.926 5 C -0.001 4.001 6 N -0.893 5.893 7 Si 0.988 3.012 8 H -0.275 1.275 9 H -0.266 1.266 10 H -0.274 1.274 11 C 0.507 3.493 12 O -0.633 6.633 13 C -0.277 4.277 14 C 0.114 3.886 15 N -0.442 5.442 16 H 0.463 0.537 17 N -0.285 5.285 18 C 0.138 3.862 19 C -0.078 4.078 20 C -0.053 4.053 21 C -0.160 4.160 22 C 0.094 3.906 23 N -0.514 5.514 24 C 0.124 3.876 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.273 0.727 29 H 0.218 0.782 30 H 0.158 0.842 31 H 0.186 0.814 32 H 0.193 0.807 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -13.921 -3.052 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.169 5.169 3 C -0.465 4.465 4 H 0.092 0.908 5 C -0.202 4.202 6 N -0.532 5.532 7 Si 0.812 3.188 8 H -0.200 1.200 9 H -0.190 1.190 10 H -0.200 1.200 11 C 0.296 3.704 12 O -0.522 6.522 13 C -0.292 4.292 14 C -0.036 4.036 15 N -0.152 5.152 16 H 0.312 0.688 17 N -0.108 5.108 18 C -0.030 4.030 19 C -0.082 4.082 20 C -0.080 4.080 21 C -0.179 4.179 22 C -0.063 4.063 23 N -0.223 5.223 24 C -0.034 4.034 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.235 0.765 30 H 0.176 0.824 31 H 0.203 0.797 32 H 0.210 0.790 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.369 -14.110 -3.691 14.776 hybrid contribution -0.091 1.153 1.010 1.535 sum -2.459 -12.958 -2.681 13.459 Atomic orbital electron populations 1.21837 0.78888 0.98668 1.03022 1.43755 1.07088 1.04289 1.61744 1.19653 0.93399 0.83942 1.49508 0.90781 1.25978 0.96785 1.01991 0.95470 1.70146 1.09011 1.28475 1.45616 0.85076 0.78002 0.77005 0.78751 1.20031 1.19010 1.19965 1.17405 0.86472 0.82997 0.83491 1.90578 1.15736 1.87671 1.58170 1.21372 1.04131 0.97669 1.06059 1.23279 0.94055 0.87553 0.98691 1.45785 1.27970 1.13949 1.27452 0.68820 1.77058 1.05610 1.21439 1.06701 1.21580 0.94880 0.91089 0.95413 1.18817 0.97017 0.95940 0.96462 1.21931 0.93701 0.96597 0.95739 1.22509 0.97862 1.01180 0.96339 1.23581 0.97290 0.87451 0.98011 1.67653 1.07670 1.31463 1.15511 1.22437 0.93013 0.96729 0.91260 0.91724 0.90808 0.94579 0.91718 0.76539 0.82430 0.79707 0.79003 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.30 8.35 127.77 1.07 6.37 16 2 N -0.45 -23.92 3.02 -662.87 -2.00 -25.92 16 3 C -0.34 -19.57 9.52 84.07 0.80 -18.77 16 4 H 0.07 4.64 7.22 -2.91 -0.02 4.62 16 5 C 0.00 -0.05 5.38 84.94 0.46 0.41 16 6 N -0.89 -46.18 9.69 21.67 0.21 -45.97 16 7 Si 0.99 43.21 29.56 68.60 2.03 45.23 16 8 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 9 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 11 C 0.51 26.22 5.86 86.60 0.51 26.72 16 12 O -0.63 -38.02 16.20 -4.17 -0.07 -38.08 16 13 C -0.28 -11.26 5.26 -18.78 -0.10 -11.36 16 14 C 0.11 3.30 9.62 84.29 0.81 4.11 16 15 N -0.44 -10.41 7.20 -56.37 -0.41 -10.82 16 16 H 0.46 6.22 8.96 -213.53 -1.91 4.30 16 17 N -0.29 -8.81 12.64 -44.51 -0.56 -9.38 16 18 C 0.14 5.19 6.97 44.08 0.31 5.49 16 19 C -0.08 -2.91 5.85 -19.95 -0.12 -3.02 16 20 C -0.05 -1.48 9.92 22.69 0.23 -1.25 16 21 C -0.16 -3.57 10.10 22.33 0.23 -3.35 16 22 C 0.09 2.52 11.17 84.70 0.95 3.47 16 23 N -0.51 -19.50 10.35 -194.91 -2.02 -21.52 16 24 C 0.12 5.20 9.93 84.97 0.84 6.04 16 25 H 0.06 2.35 4.44 -2.39 -0.01 2.34 16 26 H 0.07 3.38 6.71 -2.39 -0.02 3.36 16 27 H 0.04 1.72 7.47 -2.39 -0.02 1.70 16 28 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 29 H 0.22 4.89 7.61 -2.91 -0.02 4.86 16 30 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 31 H 0.19 2.26 8.06 -2.91 -0.02 2.23 16 32 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.12 5.79 6.86 -2.91 -0.02 5.77 16 Total: -1.00 -78.06 289.67 2.42 -75.65 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -0.74 Total: 15.94 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 5.98 Total: 14.86 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -4.78 Total: -113.60 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.07 Total: -38.08 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -78.06 2.42 -75.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541424773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.711 kcal (2) G-P(sol) polarization free energy of solvation -78.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds