Wall clock time and date at job start Mon Mar 30 2020 01:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34500 * 126.47138 * 2 1 4 4 N 1.30854 * 109.16759 * 179.97438 * 3 2 1 5 5 C 1.33308 * 109.69172 * 0.02562 * 4 3 2 6 6 C 1.36702 * 107.78288 * 359.72818 * 5 4 3 7 7 C 1.46713 * 126.85136 * 180.26596 * 6 5 4 8 8 O 1.21676 * 119.99936 * 182.84376 * 7 6 5 9 9 N 1.34777 * 119.99633 * 2.84873 * 7 6 5 10 10 C 1.39365 * 119.99823 * 185.91819 * 9 7 6 11 11 C 1.38635 * 119.57799 * 337.81557 * 10 9 7 12 12 C 1.40799 * 118.78790 * 179.78408 * 11 10 9 13 13 C 1.41554 * 120.99389 * 180.26394 * 12 11 10 14 14 H 1.07998 * 119.99563 * 202.69284 * 13 12 11 15 15 C 1.40024 * 119.99817 * 22.68909 * 13 12 11 16 16 N 1.30742 * 120.00380 * 13.07910 * 15 13 12 17 17 Si 1.86805 * 119.99757 * 193.07727 * 15 13 12 18 18 H 1.48501 * 109.47106 * 90.00215 * 17 15 13 19 19 H 1.48498 * 109.47109 * 210.00200 * 17 15 13 20 20 H 1.48499 * 109.47118 * 329.99913 * 17 15 13 21 21 C 1.41178 * 118.01338 * 0.48326 * 12 11 10 22 22 C 1.37579 * 119.01956 * 359.75463 * 21 12 11 23 23 N 1.32084 * 121.11725 * 0.02562 * 22 21 12 24 24 H 1.09002 * 109.46475 * 88.74139 * 1 2 3 25 25 H 1.08997 * 109.47094 * 328.74423 * 1 2 3 26 26 H 1.08997 * 109.46600 * 208.74004 * 1 2 3 27 27 H 1.08003 * 125.41630 * 0.02562 * 3 2 1 28 28 H 1.08006 * 126.11499 * 179.97438 * 5 4 3 29 29 H 0.96994 * 120.00406 * 5.91128 * 9 7 6 30 30 H 1.07998 * 120.60615 * 0.02562 * 11 10 9 31 31 H 0.97002 * 120.00235 * 179.97438 * 16 15 13 32 32 H 1.08001 * 120.49147 * 179.77964 * 21 12 11 33 33 H 1.08002 * 119.44401 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2646 1.0816 0.0000 4 7 3.5139 0.6924 0.0006 5 6 3.5695 -0.6395 0.0004 6 6 2.2863 -1.1109 0.0058 7 6 1.8652 -2.5163 0.0131 8 8 0.6823 -2.7972 -0.0348 9 7 2.7887 -3.4961 0.0730 10 6 2.3990 -4.8290 -0.0442 11 6 1.0896 -5.1865 0.2380 12 6 0.7128 -6.5371 0.1097 13 6 -0.6129 -6.9529 0.3806 14 1 -0.8139 -7.9823 0.6380 15 6 -1.6634 -6.0295 0.3149 16 7 -1.4723 -4.8599 -0.2373 17 14 -3.3382 -6.4688 1.0162 18 1 -3.3996 -6.0617 2.4431 19 1 -4.3961 -5.7590 0.2531 20 1 -3.5503 -7.9347 0.9100 21 6 1.6978 -7.4650 -0.2927 22 6 2.9735 -7.0163 -0.5461 23 7 3.2860 -5.7394 -0.4183 24 1 -0.3632 0.0226 -1.0275 25 1 -0.3633 0.8785 0.5332 26 1 -0.3632 -0.9011 0.4941 27 1 1.9288 2.1081 0.0004 28 1 4.4677 -1.2392 0.0003 29 1 3.7245 -3.2736 0.1976 30 1 0.3708 -4.4421 0.5470 31 1 -2.2002 -4.2204 -0.2831 32 1 1.4535 -8.5114 -0.4005 33 1 3.7323 -7.7202 -0.8548 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573526869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:54 Heat of formation + Delta-G solvation = 72.437693 kcal Electronic energy + Delta-G solvation = -20250.325746 eV Core-core repulsion = 17084.649814 eV Total energy + Delta-G solvation = -3165.675932 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.12844 -39.51198 -37.60556 -34.63819 -34.03277 -33.42487 -30.60592 -30.27072 -28.10014 -27.04706 -25.91213 -23.55839 -21.97843 -21.51061 -20.69678 -19.56828 -18.12541 -17.38229 -16.05278 -15.92808 -15.78115 -15.29968 -14.44485 -14.33624 -14.17896 -13.94520 -13.60854 -13.33971 -12.89549 -12.74079 -12.66361 -12.56644 -12.27703 -11.40778 -11.21235 -10.98673 -10.49207 -10.20646 -10.11778 -9.71157 -9.69380 -9.36052 -8.77458 -8.57008 -8.09492 -7.91670 -7.07517 -6.63822 -4.52774 1.43580 2.55062 2.69674 2.85995 2.98757 3.04623 3.07803 3.24569 3.60216 3.76162 3.89678 4.53969 4.71686 4.77008 4.90462 5.17010 5.24450 5.44335 5.63751 5.69834 5.92802 6.14832 6.48879 6.55685 6.75359 6.82164 7.02061 7.05893 7.20073 7.41084 7.59629 7.84412 7.88891 7.97293 8.32784 8.50322 8.75205 8.81192 8.90962 9.56273 10.15835 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.006405 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.742302 B = 4370.613598 C = 5833.179083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.425 5.425 3 C 0.194 3.806 4 N -0.499 5.499 5 C 0.028 3.972 6 C -0.069 4.069 7 C 0.575 3.425 8 O -0.482 6.482 9 N -0.638 5.638 10 C 0.315 3.685 11 C -0.221 4.221 12 C 0.130 3.870 13 C -0.450 4.450 14 H 0.080 0.920 15 C 0.071 3.929 16 N -0.753 5.753 17 Si 0.909 3.091 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.290 4.290 22 C 0.121 3.879 23 N -0.603 5.603 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.210 0.790 28 H 0.178 0.822 29 H 0.401 0.599 30 H 0.179 0.821 31 H 0.282 0.718 32 H 0.100 0.900 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.258 9.766 1.429 9.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.105 5.105 3 C -0.088 4.088 4 N -0.218 5.218 5 C -0.126 4.126 6 C -0.187 4.187 7 C 0.360 3.640 8 O -0.356 6.356 9 N -0.282 5.282 10 C 0.094 3.906 11 C -0.245 4.245 12 C 0.121 3.879 13 C -0.481 4.481 14 H 0.098 0.902 15 C -0.151 4.151 16 N -0.377 5.377 17 Si 0.733 3.267 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.314 4.314 22 C -0.034 4.034 23 N -0.323 5.323 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.128 0.872 27 H 0.226 0.774 28 H 0.195 0.805 29 H 0.236 0.764 30 H 0.196 0.804 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.594 10.657 1.125 10.834 hybrid contribution -1.785 -0.815 0.338 1.991 sum -0.191 9.842 1.463 9.952 Atomic orbital electron populations 1.22327 0.75100 1.05738 1.04448 1.45236 1.08412 1.05716 1.51153 1.25048 0.85675 0.93544 1.04485 1.70099 1.19065 1.12221 1.20374 1.22646 0.95333 0.91228 1.03418 1.20891 0.91379 0.89059 1.17387 1.16736 0.86180 0.82699 0.78399 1.90913 1.15752 1.82070 1.46838 1.42604 1.10475 1.04331 1.70804 1.18037 0.91260 0.82467 0.98789 1.23092 0.94932 0.99215 1.07273 1.17822 0.92730 0.90982 0.86335 1.19593 0.90765 0.96680 1.41082 0.90160 1.26033 1.01318 0.94464 0.93260 1.69838 1.33622 1.05386 1.28818 0.86298 0.80737 0.79903 0.79715 1.19319 1.20245 1.18584 1.21821 0.95583 0.99688 1.14333 1.21479 0.94540 0.90282 0.97068 1.66558 1.37454 1.02505 1.25794 0.90026 0.89714 0.87221 0.77359 0.80496 0.76389 0.80426 0.90706 0.88135 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 10.70 59.85 0.64 1.38 16 2 N -0.42 -5.77 3.17 -121.97 -0.39 -6.15 16 3 C 0.19 2.32 12.52 -90.57 -1.13 1.18 16 4 N -0.50 -7.17 11.20 -14.42 -0.16 -7.34 16 5 C 0.03 0.40 11.37 -17.47 -0.20 0.20 16 6 C -0.07 -1.12 6.91 -82.15 -0.57 -1.68 16 7 C 0.57 11.28 7.68 -12.84 -0.10 11.18 16 8 O -0.48 -10.93 11.36 5.21 0.06 -10.87 16 9 N -0.64 -12.71 5.40 -12.67 -0.07 -12.78 16 10 C 0.32 7.68 7.50 -154.78 -1.16 6.52 16 11 C -0.22 -5.91 7.58 -38.47 -0.29 -6.20 16 12 C 0.13 3.51 5.63 -106.55 -0.60 2.91 16 13 C -0.45 -11.88 9.14 -37.65 -0.34 -12.23 16 14 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 15 C 0.07 1.76 5.28 -17.35 -0.09 1.67 16 16 N -0.75 -19.38 10.44 55.55 0.58 -18.80 16 17 Si 0.91 18.41 29.58 -169.99 -5.03 13.38 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 21 C -0.29 -7.13 9.90 -38.71 -0.38 -7.51 16 22 C 0.12 2.79 11.15 -17.68 -0.20 2.59 16 23 N -0.60 -14.43 10.36 -12.54 -0.13 -14.56 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.11 1.55 6.46 -51.93 -0.34 1.21 16 27 H 0.21 1.50 8.06 -52.48 -0.42 1.08 16 28 H 0.18 2.12 7.48 -52.48 -0.39 1.73 16 29 H 0.40 6.64 7.79 -40.82 -0.32 6.32 16 30 H 0.18 4.91 3.13 -52.81 -0.17 4.74 16 31 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 32 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 33 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 289.70 15.07 4.37 4.37 Total: -1.00 -32.10 289.70 -8.07 -40.17 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -2.87 Total: 12.57 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -4.43 Total: 0.02 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.17 Total: -59.64 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.06 Total: -10.87 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.10 -8.07 -40.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573526869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.605 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds