Wall clock time and date at job start Mon Mar 30 2020 01:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34500 * 126.47138 * 2 1 4 4 N 1.30854 * 109.16759 * 179.97438 * 3 2 1 5 5 C 1.33308 * 109.69172 * 0.02562 * 4 3 2 6 6 C 1.36702 * 107.78288 * 359.72818 * 5 4 3 7 7 C 1.46713 * 126.85136 * 180.26596 * 6 5 4 8 8 O 1.21676 * 119.99936 * 182.84376 * 7 6 5 9 9 N 1.34777 * 119.99633 * 2.84873 * 7 6 5 10 10 C 1.39365 * 119.99823 * 185.91819 * 9 7 6 11 11 C 1.38635 * 119.57799 * 337.81557 * 10 9 7 12 12 C 1.40799 * 118.78790 * 179.78408 * 11 10 9 13 13 C 1.41554 * 120.99389 * 180.26394 * 12 11 10 14 14 H 1.07998 * 119.99563 * 202.69284 * 13 12 11 15 15 C 1.40024 * 119.99817 * 22.68909 * 13 12 11 16 16 N 1.30742 * 120.00380 * 13.07910 * 15 13 12 17 17 Si 1.86805 * 119.99757 * 193.07727 * 15 13 12 18 18 H 1.48501 * 109.47106 * 90.00215 * 17 15 13 19 19 H 1.48498 * 109.47109 * 210.00200 * 17 15 13 20 20 H 1.48499 * 109.47118 * 329.99913 * 17 15 13 21 21 C 1.41178 * 118.01338 * 0.48326 * 12 11 10 22 22 C 1.37579 * 119.01956 * 359.75463 * 21 12 11 23 23 N 1.32084 * 121.11725 * 0.02562 * 22 21 12 24 24 H 1.09002 * 109.46475 * 88.74139 * 1 2 3 25 25 H 1.08997 * 109.47094 * 328.74423 * 1 2 3 26 26 H 1.08997 * 109.46600 * 208.74004 * 1 2 3 27 27 H 1.08003 * 125.41630 * 0.02562 * 3 2 1 28 28 H 1.08006 * 126.11499 * 179.97438 * 5 4 3 29 29 H 0.96994 * 120.00406 * 5.91128 * 9 7 6 30 30 H 1.07998 * 120.60615 * 0.02562 * 11 10 9 31 31 H 0.97002 * 120.00235 * 179.97438 * 16 15 13 32 32 H 1.08001 * 120.49147 * 179.77964 * 21 12 11 33 33 H 1.08002 * 119.44401 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2646 1.0816 0.0000 4 7 3.5139 0.6924 0.0006 5 6 3.5695 -0.6395 0.0004 6 6 2.2863 -1.1109 0.0058 7 6 1.8652 -2.5163 0.0131 8 8 0.6823 -2.7972 -0.0348 9 7 2.7887 -3.4961 0.0730 10 6 2.3990 -4.8290 -0.0442 11 6 1.0896 -5.1865 0.2380 12 6 0.7128 -6.5371 0.1097 13 6 -0.6129 -6.9529 0.3806 14 1 -0.8139 -7.9823 0.6380 15 6 -1.6634 -6.0295 0.3149 16 7 -1.4723 -4.8599 -0.2373 17 14 -3.3382 -6.4688 1.0162 18 1 -3.3996 -6.0617 2.4431 19 1 -4.3961 -5.7590 0.2531 20 1 -3.5503 -7.9347 0.9100 21 6 1.6978 -7.4650 -0.2927 22 6 2.9735 -7.0163 -0.5461 23 7 3.2860 -5.7394 -0.4183 24 1 -0.3632 0.0226 -1.0275 25 1 -0.3633 0.8785 0.5332 26 1 -0.3632 -0.9011 0.4941 27 1 1.9288 2.1081 0.0004 28 1 4.4677 -1.2392 0.0003 29 1 3.7245 -3.2736 0.1976 30 1 0.3708 -4.4421 0.5470 31 1 -2.2002 -4.2204 -0.2831 32 1 1.4535 -8.5114 -0.4005 33 1 3.7323 -7.7202 -0.8548 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573526869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:54 Heat of formation + Delta-G solvation = 52.160723 kcal Electronic energy + Delta-G solvation = -20251.205021 eV Core-core repulsion = 17084.649814 eV Total energy + Delta-G solvation = -3166.555207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.22547 -41.17535 -39.35873 -36.32940 -35.56612 -34.79093 -32.45976 -31.70858 -29.71847 -28.00426 -27.84544 -25.02129 -23.74565 -22.88875 -22.10299 -21.01149 -19.79579 -18.78215 -17.76348 -17.18929 -17.10327 -17.03262 -16.04863 -15.96439 -15.71060 -15.29441 -14.97508 -14.68119 -14.35640 -14.35207 -14.13806 -13.82984 -13.59518 -13.17530 -12.93290 -12.71790 -12.27914 -11.91892 -11.47027 -11.29557 -11.16463 -10.74375 -10.43677 -10.00770 -9.86170 -9.71752 -8.90510 -8.49403 -6.50950 0.19266 0.90922 1.04331 1.37496 1.44830 1.50979 1.54212 1.86043 2.19193 2.22703 2.31568 2.84181 3.49109 3.75362 3.79388 3.95543 4.07335 4.20380 4.36554 4.43451 4.70867 4.78141 4.88183 4.94763 5.11898 5.17599 5.34402 5.38968 5.56204 5.69725 6.02557 6.10692 6.21622 6.47680 6.59032 6.84291 6.85152 6.94041 7.22492 7.67792 8.31218 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.006405 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.742302 B = 4370.613598 C = 5833.179083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.430 5.430 3 C 0.222 3.778 4 N -0.526 5.526 5 C 0.043 3.957 6 C -0.106 4.106 7 C 0.573 3.427 8 O -0.518 6.518 9 N -0.632 5.632 10 C 0.316 3.684 11 C -0.257 4.257 12 C 0.098 3.902 13 C -0.483 4.483 14 H 0.083 0.917 15 C 0.029 3.971 16 N -0.781 5.781 17 Si 0.985 3.015 18 H -0.264 1.264 19 H -0.267 1.267 20 H -0.256 1.256 21 C -0.307 4.307 22 C 0.122 3.878 23 N -0.605 5.605 24 H 0.084 0.916 25 H 0.130 0.870 26 H 0.075 0.925 27 H 0.260 0.740 28 H 0.196 0.804 29 H 0.417 0.583 30 H 0.167 0.833 31 H 0.287 0.713 32 H 0.115 0.885 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.301 11.313 1.577 11.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.110 5.110 3 C -0.060 4.060 4 N -0.244 5.244 5 C -0.111 4.111 6 C -0.223 4.223 7 C 0.361 3.639 8 O -0.394 6.394 9 N -0.278 5.278 10 C 0.093 3.907 11 C -0.281 4.281 12 C 0.090 3.910 13 C -0.514 4.514 14 H 0.101 0.899 15 C -0.191 4.191 16 N -0.404 5.404 17 Si 0.806 3.194 18 H -0.189 1.189 19 H -0.192 1.192 20 H -0.179 1.179 21 C -0.331 4.331 22 C -0.033 4.033 23 N -0.326 5.326 24 H 0.103 0.897 25 H 0.148 0.852 26 H 0.093 0.907 27 H 0.276 0.724 28 H 0.213 0.787 29 H 0.254 0.746 30 H 0.184 0.816 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.668 12.213 1.269 12.392 hybrid contribution -1.709 -1.175 0.259 2.090 sum -0.040 11.038 1.528 11.144 Atomic orbital electron populations 1.22412 0.74031 1.06129 1.04918 1.45446 1.09184 1.05361 1.51019 1.26078 0.84733 0.94800 1.00393 1.70183 1.20460 1.11777 1.21981 1.22998 0.95289 0.91732 1.01128 1.20451 0.92592 0.87861 1.21352 1.17247 0.85574 0.84027 0.77048 1.90895 1.17230 1.82885 1.48352 1.42532 1.11529 1.02942 1.70830 1.18251 0.90817 0.84178 0.97421 1.23129 0.96078 0.99251 1.09639 1.18279 0.93888 0.91884 0.86972 1.19893 0.91489 0.97366 1.42610 0.89909 1.26919 1.05072 0.94039 0.93023 1.69934 1.34983 1.06270 1.29240 0.85156 0.75590 0.79841 0.78837 1.18907 1.19172 1.17914 1.22054 0.95992 1.00167 1.14842 1.22120 0.94980 0.90684 0.95490 1.66755 1.37053 1.02888 1.25882 0.89727 0.85207 0.90666 0.72426 0.78737 0.74564 0.81609 0.90249 0.86724 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.41 10.70 127.77 1.37 2.78 16 2 N -0.43 -10.93 3.17 -539.81 -1.71 -12.64 16 3 C 0.22 4.52 12.52 180.33 2.26 6.77 16 4 N -0.53 -13.69 11.20 -199.53 -2.24 -15.92 16 5 C 0.04 1.19 11.37 84.11 0.96 2.14 16 6 C -0.11 -3.35 6.91 40.00 0.28 -3.07 16 7 C 0.57 23.11 7.68 86.46 0.66 23.78 16 8 O -0.52 -24.60 11.36 -4.27 -0.05 -24.65 16 9 N -0.63 -25.66 5.40 -312.23 -1.68 -27.35 16 10 C 0.32 15.72 7.50 132.79 1.00 16.72 16 11 C -0.26 -14.28 7.58 22.99 0.17 -14.11 16 12 C 0.10 5.49 5.63 -21.11 -0.12 5.37 16 13 C -0.48 -26.32 9.14 23.52 0.22 -26.11 16 14 H 0.08 4.28 7.88 -2.91 -0.02 4.25 16 15 C 0.03 1.45 5.28 85.29 0.45 1.90 16 16 N -0.78 -41.63 10.44 21.84 0.23 -41.40 16 17 Si 0.99 38.21 29.58 68.60 2.03 40.24 16 18 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 19 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 21 C -0.31 -15.27 9.90 22.84 0.23 -15.04 16 22 C 0.12 5.53 11.15 84.50 0.94 6.48 16 23 N -0.60 -28.89 10.36 -193.58 -2.01 -30.90 16 24 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 2.19 6.46 -2.39 -0.02 2.17 16 27 H 0.26 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.20 4.35 7.48 -2.91 -0.02 4.33 16 29 H 0.42 13.76 7.79 -92.71 -0.72 13.04 16 30 H 0.17 9.66 3.13 -8.03 -0.03 9.63 16 31 H 0.29 13.98 8.29 -92.71 -0.77 13.21 16 32 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 33 H 0.16 5.96 8.06 -2.91 -0.02 5.94 16 Total: -1.00 -72.44 289.70 3.41 -69.03 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: 0.43 Total: 36.00 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 8.41 Total: 7.60 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -7.41 Total: -128.22 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -72.44 3.41 -69.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573526869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.192 kcal (2) G-P(sol) polarization free energy of solvation -72.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds