Wall clock time and date at job start Mon Mar 30 2020 00:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31367 * 1 3 3 Si 1.86802 * 120.00006 * 2 1 4 4 H 1.48499 * 109.47168 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47198 * 120.00525 * 3 2 1 6 6 H 1.48499 * 109.47390 * 240.00133 * 3 2 1 7 7 C 1.39036 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00356 * 186.64170 * 7 2 1 9 9 N 1.36889 * 119.99703 * 6.64368 * 7 2 1 10 10 C 1.34767 * 120.00348 * 45.03223 * 9 7 2 11 11 O 1.21594 * 119.99948 * 5.38284 * 10 9 7 12 12 C 1.47767 * 120.00481 * 185.37766 * 10 9 7 13 13 C 1.39964 * 125.70550 * 184.24625 * 12 10 9 14 14 C 1.38562 * 107.58938 * 179.97438 * 13 12 10 15 15 N 1.34119 * 132.33214 * 179.97438 * 14 13 12 16 16 C 1.31129 * 120.84709 * 179.97438 * 15 14 13 17 17 C 1.40340 * 120.29416 * 0.02562 * 16 15 14 18 18 C 1.35461 * 119.46712 * 359.97438 * 17 16 15 19 19 N 1.36659 * 119.14293 * 0.02562 * 18 17 16 20 20 N 1.32421 * 125.69586 * 3.93602 * 12 10 9 21 21 C 1.46500 * 119.99740 * 225.03527 * 9 7 2 22 22 C 1.53006 * 117.49994 * 2.18539 * 21 9 7 23 23 C 1.53003 * 117.49837 * 293.52603 * 21 9 7 24 24 H 0.97006 * 119.99846 * 354.99205 * 1 2 3 25 25 H 1.07995 * 126.20141 * 359.97438 * 13 12 10 26 26 H 1.08004 * 119.85720 * 179.97438 * 16 15 14 27 27 H 1.07998 * 120.26733 * 180.02562 * 17 16 15 28 28 H 1.07996 * 120.43109 * 179.97438 * 18 17 16 29 29 H 1.09000 * 115.55179 * 147.85157 * 21 9 7 30 30 H 1.09006 * 117.49628 * 359.97438 * 22 21 9 31 31 H 1.08992 * 117.50094 * 145.02023 * 22 21 9 32 32 H 1.09007 * 117.49447 * 214.97625 * 23 21 9 33 33 H 1.08998 * 117.50150 * 359.97393 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 1.2827 2.7465 0.0006 5 1 3.1016 1.6964 1.2125 6 1 3.1014 1.6965 -1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0835 -1.2073 0.1076 9 7 1.3313 -2.3855 -0.1382 10 6 0.3686 -2.5052 -1.0737 11 8 0.1684 -1.5991 -1.8594 12 6 -0.4436 -3.7376 -1.1446 13 6 -1.4120 -4.0229 -2.1141 14 6 -1.9386 -5.2716 -1.8250 15 7 -2.8823 -6.0141 -2.4223 16 6 -3.2122 -7.1911 -1.9477 17 6 -2.5796 -7.6945 -0.8005 18 6 -1.6247 -6.9548 -0.1874 19 7 -1.2984 -5.7313 -0.7012 20 7 -0.3729 -4.7590 -0.3049 21 6 1.6527 -3.5198 0.7314 22 6 2.7193 -3.3053 1.8073 23 6 3.0340 -4.1595 0.5766 24 1 -0.4850 0.8369 0.0733 25 1 -1.6970 -3.3855 -2.9379 26 1 -3.9748 -7.7755 -2.4412 27 1 -2.8514 -8.6641 -0.4102 28 1 -1.1281 -7.3269 0.6966 29 1 0.8179 -4.1772 0.9744 30 1 3.1822 -2.3202 1.8677 31 1 2.5864 -3.8218 2.7578 32 1 3.1079 -5.2378 0.7182 33 1 3.7034 -3.7368 -0.1725 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589832107.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:01 Heat of formation + Delta-G solvation = 144.845883 kcal Electronic energy + Delta-G solvation = -20508.737136 eV Core-core repulsion = 17346.201059 eV Total energy + Delta-G solvation = -3162.536077 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.92789 -38.75524 -37.34590 -35.94336 -33.80605 -32.86877 -31.31261 -30.44908 -28.75234 -25.90242 -24.29160 -23.42505 -22.01720 -21.58426 -20.88405 -19.31319 -17.92250 -17.49325 -16.40072 -16.13802 -15.74672 -15.28728 -14.64213 -14.44231 -14.14691 -13.75413 -13.27170 -13.12795 -12.93384 -12.70459 -12.25740 -11.89722 -11.26526 -11.16134 -10.94556 -10.86117 -10.78302 -10.60027 -10.24662 -9.92135 -9.87587 -9.27840 -9.11082 -8.81423 -8.30317 -7.64652 -7.07064 -6.16428 -3.97122 0.67411 1.01484 2.29887 2.59252 3.28309 3.34192 3.34975 3.58354 3.95639 4.17853 4.32019 4.45646 4.53516 4.78949 4.91946 4.95212 5.25270 5.31029 5.43095 5.58776 5.78532 5.81002 5.86880 5.98124 6.21293 6.28437 6.28715 6.51096 6.62334 6.72718 6.92436 7.13696 7.51740 7.70491 7.77991 8.19761 8.95061 9.07408 9.51475 10.19145 10.90317 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027628 B = 0.005793 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.232911 B = 4832.353761 C = 5599.527906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.058 3.942 3 Si 0.922 3.078 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.084 0.916 9 N -0.406 5.406 10 C 0.540 3.460 11 O -0.509 6.509 12 C 0.118 3.882 13 C -0.207 4.207 14 C 0.237 3.763 15 N -0.460 5.460 16 C 0.168 3.832 17 C -0.243 4.243 18 C 0.167 3.833 19 N -0.320 5.320 20 N -0.290 5.290 21 C 0.067 3.933 22 C -0.176 4.176 23 C -0.204 4.204 24 H 0.268 0.732 25 H 0.166 0.834 26 H 0.174 0.826 27 H 0.161 0.839 28 H 0.174 0.826 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 -15.222 1.883 15.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.153 4.153 3 Si 0.748 3.252 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.101 0.899 9 N -0.126 5.126 10 C 0.325 3.675 11 O -0.383 6.383 12 C -0.042 4.042 13 C -0.238 4.238 14 C 0.012 3.988 15 N -0.171 5.171 16 C -0.019 4.019 17 C -0.268 4.268 18 C 0.032 3.968 19 N -0.091 5.091 20 N -0.120 5.120 21 C -0.040 4.040 22 C -0.214 4.214 23 C -0.243 4.243 24 H 0.079 0.921 25 H 0.183 0.817 26 H 0.191 0.809 27 H 0.178 0.822 28 H 0.191 0.809 29 H 0.156 0.844 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.183 -14.355 1.661 14.797 hybrid contribution 0.229 0.499 0.265 0.609 sum -2.953 -13.856 1.925 14.298 Atomic orbital electron populations 1.69841 1.06416 1.27924 1.41568 1.25421 0.95162 0.99649 0.95053 0.86114 0.79091 0.81289 0.78671 1.20926 1.20086 1.19757 1.19001 0.91352 0.81986 1.53523 0.89855 1.42584 1.33250 1.09879 1.26880 1.16566 0.83927 0.83550 0.83472 1.90648 1.68449 1.38269 1.40930 1.23179 0.95118 0.94324 0.91601 1.21016 1.02551 0.94788 1.05409 1.20493 0.94237 0.96162 0.87860 1.68185 1.12580 1.06469 1.29845 1.23270 0.95969 0.90691 0.91959 1.21669 1.01150 1.03366 1.00570 1.21985 0.94832 0.82023 0.98000 1.47592 1.27400 1.13541 1.20602 1.78307 1.11389 0.98896 1.23359 1.22443 0.92329 0.92908 0.96292 1.23107 1.04233 1.01726 0.92359 1.23245 1.01988 0.97727 1.01363 0.92148 0.81656 0.80905 0.82165 0.80858 0.84403 0.87616 0.89803 0.89921 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.61 11.14 55.50 0.62 -23.99 16 2 C 0.06 1.63 4.75 -17.45 -0.08 1.55 16 3 Si 0.92 21.51 29.56 -169.99 -5.03 16.49 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.33 -9.11 7.94 -15.00 -0.12 -9.23 16 8 H 0.08 2.18 7.19 -52.49 -0.38 1.80 16 9 N -0.41 -10.73 2.85 -108.81 -0.31 -11.04 16 10 C 0.54 14.86 6.77 -12.37 -0.08 14.78 16 11 O -0.51 -15.65 14.59 5.28 0.08 -15.57 16 12 C 0.12 2.78 6.82 -83.07 -0.57 2.21 16 13 C -0.21 -4.47 10.66 -38.82 -0.41 -4.88 16 14 C 0.24 4.42 7.90 -155.41 -1.23 3.19 16 15 N -0.46 -7.21 10.48 -12.22 -0.13 -7.33 16 16 C 0.17 1.75 11.27 -17.06 -0.19 1.56 16 17 C -0.24 -2.11 10.05 -39.78 -0.40 -2.51 16 18 C 0.17 1.94 11.30 -16.39 -0.19 1.75 16 19 N -0.32 -5.53 3.90 -12.20 -0.05 -5.58 16 20 N -0.29 -5.99 9.02 33.22 0.30 -5.69 16 21 C 0.07 1.46 5.61 -67.93 -0.38 1.08 16 22 C -0.18 -3.34 9.80 -26.69 -0.26 -3.60 16 23 C -0.20 -3.79 10.38 -26.69 -0.28 -4.07 16 24 H 0.27 7.62 8.32 -40.82 -0.34 7.28 16 25 H 0.17 3.50 8.06 -52.49 -0.42 3.08 16 26 H 0.17 1.05 8.06 -52.48 -0.42 0.62 16 27 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 28 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.14 2.95 5.06 -51.93 -0.26 2.69 16 30 H 0.11 2.14 6.71 -51.93 -0.35 1.79 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 290.05 15.07 4.37 4.37 Total: -1.00 -35.34 290.05 -7.42 -42.76 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.08 Total: 3.75 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -4.19 Total: 1.83 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.43 Total: -53.64 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.08 Total: -15.57 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.34 -7.42 -42.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589832107.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.606 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds