Wall clock time and date at job start Mon Mar 30 2020 01:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36790 * 120.00330 * 2 1 4 4 H 1.07997 * 120.00311 * 160.20504 * 3 2 1 5 5 C 1.39110 * 119.99509 * 340.20093 * 3 2 1 6 6 N 1.31323 * 120.00137 * 344.29587 * 5 3 2 7 7 Si 1.86800 * 119.99723 * 164.28929 * 5 3 2 8 8 H 1.48496 * 109.47160 * 0.02562 * 7 5 3 9 9 H 1.48495 * 109.47112 * 120.00437 * 7 5 3 10 10 H 1.48500 * 109.47275 * 240.00287 * 7 5 3 11 11 C 1.34777 * 120.00038 * 179.97438 * 2 1 3 12 12 O 1.21564 * 120.00544 * 184.61669 * 11 2 1 13 13 C 1.47999 * 119.99918 * 4.61630 * 11 2 1 14 14 C 1.40058 * 120.87999 * 208.81170 * 13 11 2 15 15 C 1.38175 * 119.22880 * 180.02562 * 14 13 11 16 16 N 1.31691 * 121.05932 * 0.02562 * 15 14 13 17 17 C 1.32764 * 121.94032 * 359.97438 * 16 15 14 18 18 C 1.47905 * 119.67355 * 180.02562 * 17 16 15 19 19 N 1.31452 * 125.83165 * 180.29477 * 18 17 16 20 20 C 1.33669 * 109.24691 * 180.15256 * 19 18 17 21 21 C 1.34981 * 108.37385 * 359.59706 * 20 19 18 22 22 N 1.36442 * 125.83689 * 359.97438 * 18 17 16 23 23 H 0.96992 * 126.49612 * 0.04580 * 22 18 17 24 24 C 1.39420 * 120.64472 * 0.27865 * 17 16 15 25 25 H 1.09007 * 109.47154 * 210.97308 * 1 2 3 26 26 H 1.08994 * 109.47082 * 330.96637 * 1 2 3 27 27 H 1.08999 * 109.47222 * 90.97507 * 1 2 3 28 28 H 0.97001 * 119.99815 * 179.97438 * 6 5 3 29 29 H 1.07996 * 120.38429 * 0.04654 * 14 13 11 30 30 H 1.07994 * 119.47264 * 180.02562 * 15 14 13 31 31 H 1.07994 * 125.80935 * 179.85617 * 20 19 18 32 32 H 1.08006 * 126.48257 * 180.22627 * 21 20 19 33 33 H 1.08005 * 120.55451 * 179.72725 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1846 0.0000 4 1 3.1811 1.2122 0.3167 5 6 1.5151 2.3537 -0.4081 6 7 0.3860 2.2898 -1.0757 7 14 2.2698 4.0145 -0.0062 8 1 3.5333 3.8146 0.7479 9 1 2.5564 4.7459 -1.2663 10 1 1.3200 4.8033 0.8189 11 6 2.1389 -1.1672 0.0005 12 8 3.3515 -1.1690 0.0853 13 6 1.4024 -2.4469 -0.1021 14 6 1.9150 -3.6189 0.4682 15 6 1.1992 -4.7950 0.3514 16 7 0.0474 -4.8290 -0.2860 17 6 -0.4793 -3.7450 -0.8429 18 6 -1.7768 -3.8401 -1.5466 19 7 -2.4032 -2.8502 -2.1430 20 6 -3.5460 -3.3041 -2.6671 21 6 -3.6414 -4.6240 -2.4014 22 7 -2.5251 -4.9716 -1.6928 23 1 -2.3069 -5.8550 -1.3570 24 6 0.1811 -2.5190 -0.7755 25 1 -0.3634 -0.8812 0.5289 26 1 -0.3633 0.8985 0.4987 27 1 -0.3633 -0.0175 -1.0275 28 1 -0.0561 3.1050 -1.3600 29 1 2.8586 -3.6035 0.9933 30 1 1.5906 -5.7010 0.7900 31 1 -4.2679 -2.7157 -3.2140 32 1 -4.4471 -5.2813 -2.6935 33 1 -0.2466 -1.6390 -1.2328 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590196146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:19 Heat of formation + Delta-G solvation = 83.522374 kcal Electronic energy + Delta-G solvation = -20074.642010 eV Core-core repulsion = 16909.446746 eV Total energy + Delta-G solvation = -3165.195264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.90439 -39.95694 -38.04789 -34.88022 -32.80867 -32.27417 -32.06015 -31.22634 -28.56175 -26.52030 -25.37535 -23.68835 -23.25858 -21.57854 -20.76154 -19.68622 -18.09931 -17.07539 -16.33175 -16.02313 -15.47722 -15.17888 -15.03541 -14.28037 -14.12940 -14.06158 -13.79625 -13.59005 -13.37013 -13.10877 -12.51975 -12.05592 -11.73541 -11.38430 -11.11872 -10.80745 -10.44155 -10.37733 -10.08733 -10.04197 -9.58024 -9.52407 -9.23996 -9.09342 -8.52494 -7.97551 -7.83588 -6.48173 -3.94387 0.89997 1.32648 2.22533 3.04629 3.08229 3.17332 3.20877 3.27801 3.80654 3.93292 4.02401 4.33035 4.64370 4.89612 4.97613 5.06383 5.28132 5.33100 5.40853 5.48391 5.59642 5.72326 5.99012 6.08861 6.22619 6.31940 6.56376 6.71450 6.78693 6.86065 7.16658 7.32135 7.43837 7.93586 7.97867 8.12978 8.34415 9.04103 9.25305 9.83823 10.54685 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021023 B = 0.005540 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.555688 B = 5053.198341 C = 6292.032441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.418 5.418 3 C -0.306 4.306 4 H 0.107 0.893 5 C 0.033 3.967 6 N -0.862 5.862 7 Si 0.930 3.070 8 H -0.266 1.266 9 H -0.279 1.279 10 H -0.278 1.278 11 C 0.462 3.538 12 O -0.587 6.587 13 C -0.049 4.049 14 C -0.126 4.126 15 C 0.094 3.906 16 N -0.491 5.491 17 C 0.178 3.822 18 C 0.257 3.743 19 N -0.461 5.461 20 C -0.023 4.023 21 C -0.051 4.051 22 N -0.550 5.550 23 H 0.425 0.575 24 C -0.114 4.114 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.273 0.727 29 H 0.143 0.857 30 H 0.160 0.840 31 H 0.174 0.826 32 H 0.179 0.821 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 -12.228 0.012 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.133 5.133 3 C -0.434 4.434 4 H 0.125 0.875 5 C -0.173 4.173 6 N -0.499 5.499 7 Si 0.756 3.244 8 H -0.190 1.190 9 H -0.205 1.205 10 H -0.204 1.204 11 C 0.252 3.748 12 O -0.474 6.474 13 C -0.060 4.060 14 C -0.148 4.148 15 C -0.064 4.064 16 N -0.203 5.203 17 C 0.041 3.959 18 C -0.004 4.004 19 N -0.181 5.181 20 C -0.174 4.174 21 C -0.187 4.187 22 N -0.152 5.152 23 H 0.264 0.736 24 C -0.136 4.136 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.161 0.839 30 H 0.177 0.823 31 H 0.191 0.809 32 H 0.196 0.804 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.245 -11.982 -0.161 14.546 hybrid contribution 0.230 0.284 0.245 0.440 sum -8.015 -11.698 0.084 14.181 Atomic orbital electron populations 1.21978 0.80679 0.99992 1.01594 1.43561 1.05890 1.04840 1.59040 1.19832 0.98477 0.83083 1.42040 0.87543 1.25443 0.96422 1.00379 0.95056 1.70006 1.17476 1.29672 1.32786 0.85807 0.79329 0.80799 0.78496 1.18960 1.20495 1.20387 1.17718 0.87130 0.82768 0.87218 1.90608 1.13115 1.86416 1.57248 1.20778 0.93545 0.96188 0.95527 1.22330 1.01130 0.92303 0.99009 1.22421 0.90082 0.97651 0.96270 1.67225 1.13225 1.30148 1.09671 1.18087 0.90859 0.89929 0.97008 1.20797 0.94009 0.82423 1.03156 1.70402 1.06798 1.28761 1.12161 1.22398 0.97049 0.92670 1.05296 1.22871 0.93280 0.98692 1.03894 1.43354 1.17432 1.12060 1.42329 0.73621 1.22931 0.94001 0.99150 0.97503 0.94729 0.90551 0.91362 0.91688 0.83883 0.82274 0.80878 0.80382 0.81545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.31 7.04 59.84 0.42 2.73 16 2 N -0.42 -10.85 3.01 -123.23 -0.37 -11.23 16 3 C -0.31 -8.44 9.34 -15.02 -0.14 -8.58 16 4 H 0.11 3.06 7.35 -52.49 -0.39 2.67 16 5 C 0.03 0.85 5.01 -17.45 -0.09 0.76 16 6 N -0.86 -22.46 10.71 55.50 0.59 -21.86 16 7 Si 0.93 20.15 29.58 -169.99 -5.03 15.12 16 8 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 11 C 0.46 11.70 7.43 -12.26 -0.09 11.61 16 12 O -0.59 -16.54 16.42 5.31 0.09 -16.45 16 13 C -0.05 -1.01 5.38 -104.69 -0.56 -1.57 16 14 C -0.13 -2.16 9.70 -38.92 -0.38 -2.54 16 15 C 0.09 1.35 11.16 -17.63 -0.20 1.15 16 16 N -0.49 -7.67 10.26 -9.90 -0.10 -7.77 16 17 C 0.18 3.09 6.75 -83.07 -0.56 2.52 16 18 C 0.26 4.14 7.86 -154.64 -1.22 2.92 16 19 N -0.46 -7.84 10.85 -11.21 -0.12 -7.97 16 20 C -0.02 -0.30 11.84 -17.91 -0.21 -0.51 16 21 C -0.05 -0.53 12.03 -16.53 -0.20 -0.73 16 22 N -0.55 -6.64 6.18 -10.55 -0.07 -6.71 16 23 H 0.43 4.09 8.96 -40.82 -0.37 3.73 16 24 C -0.11 -2.21 7.34 -38.61 -0.28 -2.49 16 25 H 0.03 0.71 5.87 -51.93 -0.31 0.40 16 26 H 0.08 1.82 6.77 -51.93 -0.35 1.47 16 27 H 0.07 1.62 6.32 -51.93 -0.33 1.29 16 28 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.14 2.32 7.97 -52.49 -0.42 1.90 16 30 H 0.16 1.65 8.06 -52.49 -0.42 1.22 16 31 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.17 3.46 4.59 -52.48 -0.24 3.22 16 LS Contribution 289.53 15.07 4.36 4.36 Total: -1.00 -32.53 289.53 -6.95 -39.48 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -2.80 Total: 7.75 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -3.51 Total: 5.26 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.07 Total: -55.53 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.09 Total: -16.45 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.53 -6.95 -39.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590196146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.003 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds