Wall clock time and date at job start Mon Mar 30 2020 01:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36790 * 120.00330 * 2 1 4 4 H 1.07997 * 120.00311 * 160.20504 * 3 2 1 5 5 C 1.39110 * 119.99509 * 340.20093 * 3 2 1 6 6 N 1.31323 * 120.00137 * 344.29587 * 5 3 2 7 7 Si 1.86800 * 119.99723 * 164.28929 * 5 3 2 8 8 H 1.48496 * 109.47160 * 0.02562 * 7 5 3 9 9 H 1.48495 * 109.47112 * 120.00437 * 7 5 3 10 10 H 1.48500 * 109.47275 * 240.00287 * 7 5 3 11 11 C 1.34777 * 120.00038 * 179.97438 * 2 1 3 12 12 O 1.21564 * 120.00544 * 184.61669 * 11 2 1 13 13 C 1.47999 * 119.99918 * 4.61630 * 11 2 1 14 14 C 1.40058 * 120.87999 * 208.81170 * 13 11 2 15 15 C 1.38175 * 119.22880 * 180.02562 * 14 13 11 16 16 N 1.31691 * 121.05932 * 0.02562 * 15 14 13 17 17 C 1.32764 * 121.94032 * 359.97438 * 16 15 14 18 18 C 1.47905 * 119.67355 * 180.02562 * 17 16 15 19 19 N 1.31452 * 125.83165 * 180.29477 * 18 17 16 20 20 C 1.33669 * 109.24691 * 180.15256 * 19 18 17 21 21 C 1.34981 * 108.37385 * 359.59706 * 20 19 18 22 22 N 1.36442 * 125.83689 * 359.97438 * 18 17 16 23 23 H 0.96992 * 126.49612 * 0.04580 * 22 18 17 24 24 C 1.39420 * 120.64472 * 0.27865 * 17 16 15 25 25 H 1.09007 * 109.47154 * 210.97308 * 1 2 3 26 26 H 1.08994 * 109.47082 * 330.96637 * 1 2 3 27 27 H 1.08999 * 109.47222 * 90.97507 * 1 2 3 28 28 H 0.97001 * 119.99815 * 179.97438 * 6 5 3 29 29 H 1.07996 * 120.38429 * 0.04654 * 14 13 11 30 30 H 1.07994 * 119.47264 * 180.02562 * 15 14 13 31 31 H 1.07994 * 125.80935 * 179.85617 * 20 19 18 32 32 H 1.08006 * 126.48257 * 180.22627 * 21 20 19 33 33 H 1.08005 * 120.55451 * 179.72725 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1846 0.0000 4 1 3.1811 1.2122 0.3167 5 6 1.5151 2.3537 -0.4081 6 7 0.3860 2.2898 -1.0757 7 14 2.2698 4.0145 -0.0062 8 1 3.5333 3.8146 0.7479 9 1 2.5564 4.7459 -1.2663 10 1 1.3200 4.8033 0.8189 11 6 2.1389 -1.1672 0.0005 12 8 3.3515 -1.1690 0.0853 13 6 1.4024 -2.4469 -0.1021 14 6 1.9150 -3.6189 0.4682 15 6 1.1992 -4.7950 0.3514 16 7 0.0474 -4.8290 -0.2860 17 6 -0.4793 -3.7450 -0.8429 18 6 -1.7768 -3.8401 -1.5466 19 7 -2.4032 -2.8502 -2.1430 20 6 -3.5460 -3.3041 -2.6671 21 6 -3.6414 -4.6240 -2.4014 22 7 -2.5251 -4.9716 -1.6928 23 1 -2.3069 -5.8550 -1.3570 24 6 0.1811 -2.5190 -0.7755 25 1 -0.3634 -0.8812 0.5289 26 1 -0.3633 0.8985 0.4987 27 1 -0.3633 -0.0175 -1.0275 28 1 -0.0561 3.1050 -1.3600 29 1 2.8586 -3.6035 0.9933 30 1 1.5906 -5.7010 0.7900 31 1 -4.2679 -2.7157 -3.2140 32 1 -4.4471 -5.2813 -2.6935 33 1 -0.2466 -1.6390 -1.2328 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590196146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:19 Heat of formation + Delta-G solvation = 60.542226 kcal Electronic energy + Delta-G solvation = -20075.638504 eV Core-core repulsion = 16909.446746 eV Total energy + Delta-G solvation = -3166.191758 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.94443 -41.47319 -39.81883 -36.89797 -34.38231 -33.57998 -33.37563 -32.85394 -29.68178 -28.41259 -27.21169 -25.13249 -24.72118 -22.79829 -21.91609 -21.07201 -19.47660 -19.02907 -17.95033 -17.49987 -16.93787 -16.85252 -16.24693 -15.92918 -15.77823 -15.68020 -14.85895 -14.78416 -14.66611 -14.36203 -14.30589 -13.85267 -13.50408 -13.25622 -12.79687 -12.49584 -12.47710 -12.10772 -11.19559 -11.16794 -11.10114 -11.00263 -10.89835 -10.59238 -10.38991 -9.86495 -9.04889 -8.45899 -6.05058 -0.43907 -0.10617 1.17496 1.37557 1.40972 1.56096 1.90631 2.07253 2.20765 2.21979 2.77916 2.84478 2.87500 3.05264 3.62765 3.81423 3.94025 3.97787 4.18723 4.38150 4.43393 4.48394 4.59882 4.69764 4.83344 4.86943 5.09079 5.16268 5.23744 5.36971 5.52669 5.74701 5.95473 6.33362 6.42392 6.67360 7.01223 7.06940 7.26612 7.84004 8.56906 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021023 B = 0.005540 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.555688 B = 5053.198341 C = 6292.032441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.434 5.434 3 C -0.352 4.352 4 H 0.082 0.918 5 C 0.002 3.998 6 N -0.882 5.882 7 Si 0.998 3.002 8 H -0.270 1.270 9 H -0.272 1.272 10 H -0.262 1.262 11 C 0.456 3.544 12 O -0.627 6.627 13 C -0.072 4.072 14 C -0.128 4.128 15 C 0.117 3.883 16 N -0.477 5.477 17 C 0.186 3.814 18 C 0.215 3.785 19 N -0.501 5.501 20 C -0.056 4.056 21 C -0.009 4.009 22 N -0.535 5.535 23 H 0.438 0.562 24 C -0.129 4.129 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.280 0.720 29 H 0.151 0.849 30 H 0.214 0.786 31 H 0.194 0.806 32 H 0.232 0.768 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 -14.621 0.031 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.150 5.150 3 C -0.480 4.480 4 H 0.100 0.900 5 C -0.202 4.202 6 N -0.519 5.519 7 Si 0.820 3.180 8 H -0.195 1.195 9 H -0.197 1.197 10 H -0.187 1.187 11 C 0.246 3.754 12 O -0.516 6.516 13 C -0.083 4.083 14 C -0.149 4.149 15 C -0.041 4.041 16 N -0.189 5.189 17 C 0.050 3.950 18 C -0.044 4.044 19 N -0.222 5.222 20 C -0.206 4.206 21 C -0.146 4.146 22 N -0.138 5.138 23 H 0.279 0.721 24 C -0.151 4.151 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.169 0.831 30 H 0.230 0.770 31 H 0.211 0.789 32 H 0.249 0.751 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.091 -14.396 -0.139 17.581 hybrid contribution 0.662 0.817 0.159 1.063 sum -9.429 -13.580 0.019 16.532 Atomic orbital electron populations 1.21781 0.79272 1.00106 1.00856 1.43752 1.06819 1.04874 1.59514 1.19796 0.98296 0.84803 1.45065 0.90014 1.26259 0.96756 1.03219 0.93994 1.70072 1.18200 1.30950 1.32657 0.84825 0.78482 0.76220 0.78475 1.19457 1.19727 1.18692 1.18476 0.87073 0.84216 0.85607 1.90546 1.14958 1.87477 1.58612 1.20467 0.94473 0.95070 0.98285 1.22535 1.01658 0.91967 0.98751 1.23212 0.88654 0.98173 0.94017 1.67417 1.13410 1.28896 1.09160 1.18199 0.91285 0.89238 0.96291 1.20484 0.94582 0.83877 1.05506 1.70309 1.08558 1.30481 1.12846 1.22949 0.96725 0.94488 1.06477 1.23681 0.92675 0.98249 1.00028 1.43355 1.17136 1.11701 1.41633 0.72061 1.22657 0.94056 0.99820 0.98556 0.92703 0.91913 0.92636 0.90988 0.83131 0.76951 0.78924 0.75140 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.94 7.04 127.77 0.90 6.84 16 2 N -0.43 -23.90 3.01 -662.06 -1.99 -25.90 16 3 C -0.35 -20.52 9.34 84.13 0.79 -19.73 16 4 H 0.08 5.04 7.35 -2.91 -0.02 5.02 16 5 C 0.00 0.09 5.01 84.98 0.43 0.52 16 6 N -0.88 -47.32 10.71 21.69 0.23 -47.09 16 7 Si 1.00 42.24 29.58 68.60 2.03 44.27 16 8 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 9 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 11 C 0.46 24.32 7.43 86.83 0.65 24.97 16 12 O -0.63 -37.26 16.42 -3.92 -0.06 -37.32 16 13 C -0.07 -3.06 5.38 -19.91 -0.11 -3.16 16 14 C -0.13 -4.26 9.70 22.70 0.22 -4.04 16 15 C 0.12 3.00 11.16 84.70 0.95 3.95 16 16 N -0.48 -13.59 10.26 -185.24 -1.90 -15.49 16 17 C 0.19 6.30 6.75 41.85 0.28 6.58 16 18 C 0.22 6.67 7.86 136.55 1.07 7.75 16 19 N -0.50 -16.87 10.85 -189.36 -2.05 -18.92 16 20 C -0.06 -1.35 11.84 83.66 0.99 -0.36 16 21 C -0.01 -0.15 12.03 83.18 1.00 0.85 16 22 N -0.53 -11.19 6.18 -187.28 -1.16 -12.35 16 23 H 0.44 6.70 8.96 -92.71 -0.83 5.87 16 24 C -0.13 -5.14 7.34 22.90 0.17 -4.97 16 25 H 0.05 2.38 5.87 -2.38 -0.01 2.36 16 26 H 0.06 3.14 6.77 -2.39 -0.02 3.12 16 27 H 0.06 2.81 6.32 -2.39 -0.02 2.79 16 28 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.15 4.76 7.97 -2.91 -0.02 4.74 16 30 H 0.21 3.19 8.06 -2.91 -0.02 3.16 16 31 H 0.19 3.53 8.06 -2.91 -0.02 3.50 16 32 H 0.23 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.15 6.41 4.59 -2.91 -0.01 6.40 16 Total: -1.00 -76.01 289.53 2.77 -73.24 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.35 Total: 20.37 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 7.33 Total: 19.19 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -6.87 Total: -119.75 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.06 Total: -37.32 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -76.01 2.77 -73.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590196146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.786 kcal (2) G-P(sol) polarization free energy of solvation -76.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds