Wall clock time and date at job start Mon Mar 30 2020 01:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34600 * 125.84630 * 2 1 4 4 C 1.36723 * 107.58981 * 179.97438 * 3 2 1 5 5 C 1.48029 * 126.26757 * 179.97438 * 4 3 2 6 6 N 1.32616 * 119.84396 * 51.33548 * 5 4 3 7 7 C 1.31761 * 121.76065 * 179.97438 * 6 5 4 8 8 C 1.38471 * 121.25367 * 0.02562 * 7 6 5 9 9 C 1.38339 * 119.54657 * 359.70140 * 8 7 6 10 10 C 1.40006 * 118.37486 * 0.56103 * 9 8 7 11 11 C 1.47398 * 120.62348 * 179.71161 * 10 9 8 12 12 O 1.21630 * 120.00106 * 186.87211 * 11 10 9 13 13 N 1.34778 * 119.99917 * 6.87297 * 11 10 9 14 14 C 1.36869 * 120.00010 * 179.72358 * 13 11 10 15 15 H 1.07994 * 119.99919 * 0.27807 * 14 13 11 16 16 C 1.39040 * 120.00080 * 180.27102 * 14 13 11 17 17 N 1.31367 * 119.99821 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00018 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47146 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46715 * 120.00529 * 18 16 14 21 21 H 1.48502 * 109.46768 * 240.00504 * 18 16 14 22 22 C 1.41042 * 107.45818 * 0.26781 * 4 3 2 23 23 N 1.30585 * 108.04292 * 359.54996 * 22 4 3 24 24 H 1.09002 * 109.47134 * 89.99663 * 1 2 3 25 25 H 1.08992 * 109.47147 * 209.99924 * 1 2 3 26 26 H 1.09002 * 109.46737 * 330.00398 * 1 2 3 27 27 H 1.07990 * 126.20318 * 359.96442 * 3 2 1 28 28 H 1.08002 * 119.36905 * 180.02562 * 7 6 5 29 29 H 1.08000 * 120.23024 * 180.02562 * 8 7 6 30 30 H 1.07998 * 120.81646 * 180.29546 * 9 8 7 31 31 H 0.97005 * 120.00119 * 359.97438 * 13 11 10 32 32 H 0.97005 * 119.99992 * 179.97438 * 17 16 14 33 33 H 1.08003 * 125.97682 * 179.70306 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2532 1.0911 0.0000 4 6 3.5516 0.6627 0.0006 5 6 4.7571 1.5218 0.0003 6 7 4.8773 2.4907 0.8978 7 6 5.9339 3.2771 0.9322 8 6 6.9714 3.1264 0.0275 9 6 6.9036 2.1286 -0.9282 10 6 5.7704 1.3066 -0.9528 11 6 5.6437 0.2323 -1.9539 12 8 4.6046 -0.3930 -2.0468 13 7 6.6794 -0.0574 -2.7663 14 6 6.5637 -1.0588 -3.6921 15 1 5.6411 -1.6139 -3.7746 16 6 7.6341 -1.3613 -4.5264 17 7 8.7566 -0.6863 -4.4257 18 14 7.4759 -2.7276 -5.7904 19 1 6.1209 -3.3287 -5.7027 20 1 7.6823 -2.1695 -7.1509 21 1 8.4988 -3.7704 -5.5227 22 6 3.5320 -0.7475 -0.0053 23 7 2.2849 -1.1347 0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.9204 2.1184 -0.0005 28 1 5.9919 4.0539 1.6803 29 1 7.8300 3.7801 0.0711 30 1 7.7032 1.9897 -1.6407 31 1 7.5081 0.4415 -2.6924 32 1 9.5035 -0.8976 -5.0075 33 1 4.3971 -1.3941 -0.0110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590446714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:15 Heat of formation + Delta-G solvation = 87.932534 kcal Electronic energy + Delta-G solvation = -20107.983425 eV Core-core repulsion = 16942.979400 eV Total energy + Delta-G solvation = -3165.004025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74543 -39.53619 -37.71300 -34.24506 -33.05322 -32.32217 -31.43718 -31.00314 -28.91391 -26.47110 -25.33750 -23.53514 -22.91173 -20.52907 -20.07712 -19.59155 -18.20448 -17.07426 -16.45534 -15.82196 -15.28583 -15.03064 -14.75213 -14.23427 -13.95207 -13.85046 -13.54200 -13.10928 -12.98176 -12.61412 -12.50927 -12.27826 -12.01774 -11.70418 -11.59636 -11.19937 -10.42684 -10.36725 -10.24290 -9.70685 -9.46337 -9.27746 -9.05995 -8.78751 -8.32988 -8.07829 -7.42883 -6.60941 -3.91834 1.16042 1.54563 2.45487 2.96758 3.09899 3.19905 3.27435 3.39257 3.89309 4.05482 4.45804 4.60557 4.82521 4.96366 5.15674 5.21144 5.24883 5.29271 5.34130 5.38494 5.50152 5.70511 5.73003 6.00004 6.15341 6.26093 6.45629 6.50659 6.61217 7.00947 7.22462 7.39166 7.45598 7.91258 8.26645 8.33510 8.47078 9.02875 9.37839 9.95149 10.55826 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.006373 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.680143 B = 4392.559421 C = 5957.211931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.387 5.387 3 C 0.079 3.921 4 C -0.176 4.176 5 C 0.242 3.758 6 N -0.486 5.486 7 C 0.094 3.906 8 C -0.183 4.183 9 C -0.063 4.063 10 C -0.137 4.137 11 C 0.466 3.534 12 O -0.574 6.574 13 N -0.542 5.542 14 C -0.289 4.289 15 H 0.110 0.890 16 C 0.023 3.977 17 N -0.889 5.889 18 Si 0.933 3.067 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.279 1.279 22 C 0.147 3.853 23 N -0.317 5.317 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.167 0.833 28 H 0.151 0.849 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.392 0.608 32 H 0.275 0.725 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 6.997 8.205 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.168 5.168 3 C -0.068 4.068 4 C -0.189 4.189 5 C 0.102 3.898 6 N -0.195 5.195 7 C -0.064 4.064 8 C -0.203 4.203 9 C -0.090 4.090 10 C -0.144 4.144 11 C 0.253 3.747 12 O -0.459 6.459 13 N -0.176 5.176 14 C -0.418 4.418 15 H 0.128 0.872 16 C -0.180 4.180 17 N -0.528 5.528 18 Si 0.760 3.240 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.041 4.041 23 N -0.138 5.138 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.185 0.815 28 H 0.169 0.831 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.226 0.774 32 H 0.085 0.915 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.513 5.659 8.596 13.356 hybrid contribution 1.996 0.485 -1.441 2.509 sum -6.517 6.145 7.155 11.464 Atomic orbital electron populations 1.21689 0.75077 1.03708 1.02832 1.48062 1.06113 1.03934 1.58715 1.22227 0.90427 0.92824 1.01287 1.18153 0.90357 0.92717 1.17678 1.18949 0.91513 0.90587 0.88707 1.67742 1.24469 1.04982 1.22282 1.22654 0.89390 0.97026 0.97327 1.21980 1.00787 1.00052 0.97528 1.21810 0.96665 0.93286 0.97231 1.21264 0.95529 0.99104 0.98455 1.17429 0.85715 0.86691 0.84837 1.90647 1.28477 1.54507 1.72316 1.41943 1.13591 1.31637 1.30389 1.19898 1.00925 1.10513 1.10499 0.87244 1.25385 0.94759 0.98974 0.98921 1.69594 1.03554 1.40419 1.39276 0.85733 0.78861 0.79966 0.79487 1.18948 1.20558 1.20488 1.23589 0.94398 0.93362 0.92762 1.77166 1.01738 1.07440 1.27447 0.91345 0.89735 0.90121 0.81532 0.83143 0.85028 0.84499 0.77369 0.91460 0.80562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.18 11.45 59.85 0.69 1.86 16 2 N -0.39 -6.44 3.99 -67.88 -0.27 -6.71 16 3 C 0.08 1.35 11.45 -16.89 -0.19 1.15 16 4 C -0.18 -3.47 4.70 -105.37 -0.50 -3.97 16 5 C 0.24 4.68 6.65 -82.56 -0.55 4.13 16 6 N -0.49 -8.34 10.30 -9.47 -0.10 -8.44 16 7 C 0.09 1.33 11.16 -17.50 -0.20 1.13 16 8 C -0.18 -2.53 10.09 -39.46 -0.40 -2.93 16 9 C -0.06 -1.06 9.62 -38.88 -0.37 -1.44 16 10 C -0.14 -2.77 5.91 -104.55 -0.62 -3.39 16 11 C 0.47 11.12 7.55 -12.53 -0.09 11.03 16 12 O -0.57 -15.06 11.46 5.25 0.06 -15.00 16 13 N -0.54 -13.45 5.23 -11.97 -0.06 -13.52 16 14 C -0.29 -7.76 9.68 -15.01 -0.15 -7.91 16 15 H 0.11 3.10 7.15 -52.49 -0.38 2.72 16 16 C 0.02 0.59 5.50 -17.45 -0.10 0.50 16 17 N -0.89 -23.13 13.05 55.50 0.72 -22.41 16 18 Si 0.93 20.34 29.55 -169.99 -5.02 15.32 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 C 0.15 3.05 8.93 -17.02 -0.15 2.90 16 23 N -0.32 -6.35 12.53 30.83 0.39 -5.97 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 28 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.14 2.21 6.57 -52.49 -0.34 1.86 16 31 H 0.39 9.25 6.04 -40.82 -0.25 9.00 16 32 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.18 3.70 7.62 -52.48 -0.40 3.30 16 LS Contribution 294.41 15.07 4.44 4.44 Total: -1.00 -32.25 294.41 -5.51 -37.77 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -3.04 Total: 11.45 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.63 Total: 3.07 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.68 Total: -57.05 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.06 Total: -15.00 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.25 -5.51 -37.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590446714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.699 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds