Wall clock time and date at job start Mon Mar 30 2020 01:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34600 * 125.84630 * 2 1 4 4 C 1.36723 * 107.58981 * 179.97438 * 3 2 1 5 5 C 1.48029 * 126.26757 * 179.97438 * 4 3 2 6 6 N 1.32616 * 119.84396 * 51.33548 * 5 4 3 7 7 C 1.31761 * 121.76065 * 179.97438 * 6 5 4 8 8 C 1.38471 * 121.25367 * 0.02562 * 7 6 5 9 9 C 1.38339 * 119.54657 * 359.70140 * 8 7 6 10 10 C 1.40006 * 118.37486 * 0.56103 * 9 8 7 11 11 C 1.47398 * 120.62348 * 179.71161 * 10 9 8 12 12 O 1.21630 * 120.00106 * 186.87211 * 11 10 9 13 13 N 1.34778 * 119.99917 * 6.87297 * 11 10 9 14 14 C 1.36869 * 120.00010 * 179.72358 * 13 11 10 15 15 H 1.07994 * 119.99919 * 0.27807 * 14 13 11 16 16 C 1.39040 * 120.00080 * 180.27102 * 14 13 11 17 17 N 1.31367 * 119.99821 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00018 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47146 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46715 * 120.00529 * 18 16 14 21 21 H 1.48502 * 109.46768 * 240.00504 * 18 16 14 22 22 C 1.41042 * 107.45818 * 0.26781 * 4 3 2 23 23 N 1.30585 * 108.04292 * 359.54996 * 22 4 3 24 24 H 1.09002 * 109.47134 * 89.99663 * 1 2 3 25 25 H 1.08992 * 109.47147 * 209.99924 * 1 2 3 26 26 H 1.09002 * 109.46737 * 330.00398 * 1 2 3 27 27 H 1.07990 * 126.20318 * 359.96442 * 3 2 1 28 28 H 1.08002 * 119.36905 * 180.02562 * 7 6 5 29 29 H 1.08000 * 120.23024 * 180.02562 * 8 7 6 30 30 H 1.07998 * 120.81646 * 180.29546 * 9 8 7 31 31 H 0.97005 * 120.00119 * 359.97438 * 13 11 10 32 32 H 0.97005 * 119.99992 * 179.97438 * 17 16 14 33 33 H 1.08003 * 125.97682 * 179.70306 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2532 1.0911 0.0000 4 6 3.5516 0.6627 0.0006 5 6 4.7571 1.5218 0.0003 6 7 4.8773 2.4907 0.8978 7 6 5.9339 3.2771 0.9322 8 6 6.9714 3.1264 0.0275 9 6 6.9036 2.1286 -0.9282 10 6 5.7704 1.3066 -0.9528 11 6 5.6437 0.2323 -1.9539 12 8 4.6046 -0.3930 -2.0468 13 7 6.6794 -0.0574 -2.7663 14 6 6.5637 -1.0588 -3.6921 15 1 5.6411 -1.6139 -3.7746 16 6 7.6341 -1.3613 -4.5264 17 7 8.7566 -0.6863 -4.4257 18 14 7.4759 -2.7276 -5.7904 19 1 6.1209 -3.3287 -5.7027 20 1 7.6823 -2.1695 -7.1509 21 1 8.4988 -3.7704 -5.5227 22 6 3.5320 -0.7475 -0.0053 23 7 2.2849 -1.1347 0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.9204 2.1184 -0.0005 28 1 5.9919 4.0539 1.6803 29 1 7.8300 3.7801 0.0711 30 1 7.7032 1.9897 -1.6407 31 1 7.5081 0.4415 -2.6924 32 1 9.5035 -0.8976 -5.0075 33 1 4.3971 -1.3941 -0.0110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590446714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:15 Heat of formation + Delta-G solvation = 64.879961 kcal Electronic energy + Delta-G solvation = -20108.983060 eV Core-core repulsion = 16942.979400 eV Total energy + Delta-G solvation = -3166.003660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.14556 -40.95344 -39.45463 -36.12231 -34.38504 -33.81154 -32.98608 -32.58870 -30.25328 -27.76125 -27.04824 -25.01927 -24.25866 -21.99717 -21.46251 -21.20828 -20.08870 -18.45605 -18.02554 -17.20073 -16.67629 -16.59300 -16.16748 -15.80246 -15.61479 -15.35521 -14.96341 -14.55227 -14.52423 -13.94767 -13.67265 -13.58085 -13.41599 -13.26406 -12.95552 -12.92228 -12.43697 -12.14094 -11.67681 -11.56452 -10.81181 -10.72028 -10.47952 -10.23129 -10.06521 -9.85639 -8.86400 -8.53930 -5.96439 -0.19116 0.24784 1.08380 1.37391 1.40371 1.54376 1.79031 1.91273 2.25709 2.26503 2.92285 3.09575 3.32324 3.41164 3.81791 3.97022 4.03130 4.08631 4.13997 4.34524 4.40082 4.48234 4.69622 4.70837 4.76118 4.93303 5.03958 5.23412 5.25553 5.37220 5.66842 5.78448 5.96621 6.24801 6.54224 6.82892 7.02863 7.07147 7.48388 8.06969 8.63502 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.006373 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.680143 B = 4392.559421 C = 5957.211931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.380 5.380 3 C 0.091 3.909 4 C -0.209 4.209 5 C 0.236 3.764 6 N -0.495 5.495 7 C 0.112 3.888 8 C -0.168 4.168 9 C -0.062 4.062 10 C -0.175 4.175 11 C 0.471 3.529 12 O -0.602 6.602 13 N -0.555 5.555 14 C -0.326 4.326 15 H 0.082 0.918 16 C -0.009 4.009 17 N -0.912 5.912 18 Si 0.994 3.006 19 H -0.275 1.275 20 H -0.269 1.269 21 H -0.269 1.269 22 C 0.124 3.876 23 N -0.345 5.345 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.205 0.795 28 H 0.201 0.799 29 H 0.179 0.821 30 H 0.139 0.861 31 H 0.395 0.605 32 H 0.281 0.719 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.678 9.646 9.417 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.162 5.162 3 C -0.058 4.058 4 C -0.221 4.221 5 C 0.098 3.902 6 N -0.204 5.204 7 C -0.046 4.046 8 C -0.187 4.187 9 C -0.089 4.089 10 C -0.180 4.180 11 C 0.259 3.741 12 O -0.489 6.489 13 N -0.191 5.191 14 C -0.456 4.456 15 H 0.100 0.900 16 C -0.210 4.210 17 N -0.552 5.552 18 Si 0.817 3.183 19 H -0.200 1.200 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.063 4.063 23 N -0.167 5.167 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.139 0.861 27 H 0.222 0.778 28 H 0.218 0.782 29 H 0.196 0.804 30 H 0.156 0.844 31 H 0.230 0.770 32 H 0.091 0.909 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.814 8.309 9.823 15.595 hybrid contribution 1.953 -0.143 -1.595 2.525 sum -6.861 8.166 8.229 13.471 Atomic orbital electron populations 1.22184 0.71707 1.06200 1.04250 1.48525 1.07922 1.02925 1.56804 1.22751 0.89534 0.94275 0.99198 1.18425 0.92022 0.92252 1.19446 1.18956 0.91146 0.91185 0.88885 1.67843 1.26024 1.05008 1.21569 1.23582 0.87749 0.96154 0.97159 1.22445 1.01995 0.98825 0.95422 1.21981 0.95412 0.93432 0.98058 1.21012 0.98131 0.99822 0.99070 1.18131 0.84777 0.86636 0.84509 1.90621 1.29567 1.55596 1.73080 1.41880 1.14098 1.32047 1.31051 1.19734 1.00737 1.12252 1.12831 0.90030 1.26069 0.94172 1.00737 1.00026 1.69639 1.03929 1.41478 1.40148 0.84859 0.78313 0.77536 0.77575 1.19992 1.19378 1.19383 1.23378 0.94294 0.94273 0.94360 1.77041 1.01950 1.09515 1.28221 0.90384 0.88905 0.86076 0.77814 0.78187 0.80411 0.84356 0.76972 0.90938 0.82831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.85 11.45 127.77 1.46 3.32 16 2 N -0.38 -12.33 3.99 -368.67 -1.47 -13.81 16 3 C 0.09 2.97 11.45 83.91 0.96 3.93 16 4 C -0.21 -8.34 4.70 -20.35 -0.10 -8.43 16 5 C 0.24 9.05 6.65 42.24 0.28 9.33 16 6 N -0.50 -15.66 10.30 -183.89 -1.89 -17.55 16 7 C 0.11 2.62 11.16 84.76 0.95 3.56 16 8 C -0.17 -3.90 10.09 22.35 0.23 -3.67 16 9 C -0.06 -2.02 9.62 22.72 0.22 -1.80 16 10 C -0.17 -7.13 5.91 -19.82 -0.12 -7.24 16 11 C 0.47 23.72 7.55 86.66 0.65 24.38 16 12 O -0.60 -33.65 11.46 -4.13 -0.05 -33.70 16 13 N -0.56 -29.09 5.23 -310.02 -1.62 -30.71 16 14 C -0.33 -18.54 9.68 84.10 0.81 -17.73 16 15 H 0.08 4.98 7.15 -2.91 -0.02 4.95 16 16 C -0.01 -0.48 5.50 84.95 0.47 -0.02 16 17 N -0.91 -48.37 13.05 21.68 0.28 -48.09 16 18 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 22 C 0.12 5.45 8.93 85.57 0.76 6.21 16 23 N -0.35 -14.29 12.53 -56.37 -0.71 -15.00 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.21 4.90 8.06 -2.92 -0.02 4.88 16 28 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.14 4.39 6.57 -2.91 -0.02 4.37 16 31 H 0.40 19.51 6.04 -92.70 -0.56 18.95 16 32 H 0.28 13.83 8.31 -92.70 -0.77 13.06 16 33 H 0.15 7.17 7.62 -2.91 -0.02 7.15 16 Total: -1.00 -75.02 294.41 3.75 -71.27 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.60 Total: 30.91 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 6.58 Total: 11.84 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -5.41 Total: -125.15 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.05 Total: -33.70 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -75.02 3.75 -71.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590446714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.154 kcal (2) G-P(sol) polarization free energy of solvation -75.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds