Wall clock time and date at job start Mon Mar 30 2020 01:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35678 * 116.99730 * 2 1 4 4 C 1.38920 * 119.68157 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.10912 * 180.02562 * 4 3 2 6 6 C 1.38825 * 118.48801 * 359.97438 * 5 4 3 7 7 C 1.38048 * 119.28819 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.58402 * 180.02562 * 7 6 5 9 9 F 1.39905 * 109.47132 * 59.99776 * 8 7 6 10 10 F 1.39900 * 109.47126 * 300.00112 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 8 7 6 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 8 7 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 8 14 14 C 1.50696 * 109.46800 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00575 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99722 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99924 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47032 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47236 * 120.00183 * 18 16 14 21 21 H 1.48500 * 109.46924 * 239.99946 * 18 16 14 22 22 N 1.31963 * 120.83701 * 0.27507 * 7 6 5 23 23 H 1.09004 * 109.46677 * 60.00043 * 1 2 3 24 24 H 1.08994 * 109.47094 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46913 * 300.00722 * 1 2 3 26 26 H 1.07997 * 120.44641 * 0.03288 * 4 3 2 27 27 H 1.07998 * 120.75278 * 179.97438 * 5 4 3 28 28 H 1.07995 * 120.35837 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47153 * 59.99773 * 11 8 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 11 8 7 31 31 H 1.00902 * 111.00582 * 303.95797 * 12 11 8 32 32 H 1.08995 * 109.47167 * 300.00240 * 13 12 11 33 33 H 1.09003 * 109.46442 * 60.00214 * 13 12 11 34 34 H 0.96998 * 120.00185 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0005 5 6 4.0485 2.5132 0.0000 6 6 3.2505 3.6492 0.0005 7 6 1.8771 3.5097 0.0000 8 6 1.0045 4.7384 -0.0001 9 9 1.2727 5.5008 -1.1420 10 9 1.2717 5.5002 1.1425 11 6 -0.4669 4.3190 -0.0001 12 7 -1.3174 5.5167 0.0005 13 6 -2.7404 5.1518 -0.0001 14 6 -3.5798 6.4034 -0.0001 15 1 -3.1039 7.3729 -0.0001 16 6 -4.9555 6.3108 -0.0001 17 7 -5.5351 5.1302 -0.0007 18 14 -5.9961 7.8621 -0.0009 19 1 -5.1091 9.0531 -0.0007 20 1 -6.8531 7.8827 -1.2133 21 1 -6.8532 7.8837 1.2116 22 7 1.3186 2.3141 0.0044 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 4.0229 0.3696 -0.0015 27 1 5.1254 2.5947 0.0000 28 1 3.6993 4.6315 0.0006 29 1 -0.6755 3.7252 0.8899 30 1 -0.6754 3.7253 -0.8901 31 1 -1.0978 6.1159 0.7820 32 1 -2.9645 4.5645 -0.8905 33 1 -2.9649 4.5633 0.8895 34 1 -6.5029 5.0650 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591766646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:07 Heat of formation + Delta-G solvation = -95.529817 kcal Electronic energy + Delta-G solvation = -20740.251513 eV Core-core repulsion = 17116.602777 eV Total energy + Delta-G solvation = -3623.648736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.78233 -46.75590 -40.87174 -38.15829 -35.46268 -33.25616 -32.37249 -31.47489 -28.86141 -27.47987 -25.95530 -23.79462 -23.11859 -21.63070 -21.20113 -18.65552 -17.58800 -17.39737 -16.68854 -16.32564 -16.13389 -16.04099 -15.59755 -14.60854 -14.43236 -14.31151 -13.81047 -13.72528 -13.37619 -13.16184 -13.07150 -12.84766 -12.62027 -12.24662 -11.87266 -11.60801 -11.42293 -11.35751 -11.10991 -10.73592 -10.61448 -10.25748 -10.01740 -9.76362 -9.18034 -8.82627 -8.49596 -7.41687 -6.03991 -4.05694 0.66482 0.98798 2.82880 3.26581 3.32215 3.36822 3.39282 3.45282 4.11776 4.39182 4.44992 4.64664 4.73464 4.80156 4.92139 4.97594 5.13346 5.19305 5.27692 5.32425 5.54377 5.58481 5.62879 5.82224 6.02150 6.05988 6.15575 6.95566 7.15317 7.35800 7.49830 7.74235 8.07035 8.29013 8.52530 9.03029 9.59134 11.07294 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.004386 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.509692 B = 6382.100837 C = 7292.177338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.307 6.307 3 C 0.323 3.677 4 C -0.175 4.175 5 C -0.041 4.041 6 C -0.174 4.174 7 C 0.112 3.888 8 C 0.351 3.649 9 F -0.177 7.177 10 F -0.189 7.189 11 C 0.040 3.960 12 N -0.688 5.688 13 C 0.197 3.803 14 C -0.514 4.514 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.901 3.099 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.285 1.285 22 N -0.508 5.508 23 H 0.064 0.936 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.144 0.856 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.334 0.666 32 H 0.031 0.969 33 H -0.010 1.010 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.715 -9.265 0.820 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.213 6.213 3 C 0.143 3.857 4 C -0.196 4.196 5 C -0.067 4.067 6 C -0.194 4.194 7 C -0.026 4.026 8 C 0.314 3.686 9 F -0.158 7.158 10 F -0.170 7.170 11 C -0.091 4.091 12 N -0.319 5.319 13 C 0.071 3.929 14 C -0.552 4.552 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.211 1.211 22 N -0.231 5.231 23 H 0.083 0.917 24 H 0.117 0.883 25 H 0.082 0.918 26 H 0.164 0.836 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.151 0.849 32 H 0.049 0.951 33 H 0.007 0.993 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.738 -9.584 0.135 20.162 hybrid contribution -0.077 0.679 0.892 1.124 sum 17.661 -8.905 1.027 19.805 Atomic orbital electron populations 1.22972 0.76363 1.03311 1.03276 1.86236 1.23566 1.23863 1.87656 1.19777 0.89346 0.84479 0.92071 1.21197 0.92040 0.99819 1.06539 1.21414 1.00789 0.90784 0.93706 1.21792 0.93465 1.00904 1.03283 1.21056 0.92085 0.91819 0.97653 1.19405 0.95796 0.81189 0.72238 1.93059 1.95118 1.77217 1.50394 1.93019 1.95290 1.77629 1.51094 1.22622 0.87616 0.95068 1.03824 1.60686 1.07355 1.14406 1.49455 1.19570 0.80550 0.96763 0.96038 1.21209 0.90751 0.92964 1.50307 0.91722 1.24985 0.97949 0.96355 0.95259 1.69970 1.09980 1.22852 1.50972 0.86397 0.80099 0.83189 0.77484 1.19569 1.20968 1.21088 1.66914 1.40899 0.97912 1.17385 0.91723 0.88332 0.91822 0.83555 0.83351 0.83807 0.92881 0.88493 0.84858 0.95137 0.99256 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.70 10.48 -18.74 -0.20 -3.89 16 3 C 0.32 4.11 7.49 -17.12 -0.13 3.98 16 4 C -0.18 -1.71 10.04 -39.27 -0.39 -2.11 16 5 C -0.04 -0.37 10.17 -39.31 -0.40 -0.77 16 6 C -0.17 -1.98 9.62 -39.43 -0.38 -2.36 16 7 C 0.11 1.63 6.17 -82.61 -0.51 1.12 16 8 C 0.35 5.91 1.93 -27.89 -0.05 5.86 16 9 F -0.18 -3.16 16.89 2.25 0.04 -3.12 16 10 F -0.19 -3.20 16.44 2.25 0.04 -3.16 16 11 C 0.04 0.76 4.44 -3.83 -0.02 0.74 16 12 N -0.69 -15.58 6.41 -115.06 -0.74 -16.32 16 13 C 0.20 5.26 5.44 -4.98 -0.03 5.23 16 14 C -0.51 -14.81 9.32 -34.44 -0.32 -15.13 16 15 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 18 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 N -0.51 -7.44 7.85 -9.55 -0.07 -7.52 16 23 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 24 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 28 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.05 1.00 8.05 -51.93 -0.42 0.59 16 30 H 0.10 1.87 8.06 -51.93 -0.42 1.45 16 31 H 0.33 7.36 8.25 -39.29 -0.32 7.04 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 33 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -31.97 307.96 -5.94 -37.91 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.08 Total: 1.26 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.28 Total: -0.49 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.08 Total: -50.02 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.20 Total: -3.89 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.08 Total: -6.29 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.97 -5.94 -37.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591766646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.617 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds