Wall clock time and date at job start Mon Mar 30 2020 01:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35678 * 116.99730 * 2 1 4 4 C 1.38920 * 119.68157 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.10912 * 180.02562 * 4 3 2 6 6 C 1.38825 * 118.48801 * 359.97438 * 5 4 3 7 7 C 1.38048 * 119.28819 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.58402 * 180.02562 * 7 6 5 9 9 F 1.39905 * 109.47132 * 59.99776 * 8 7 6 10 10 F 1.39900 * 109.47126 * 300.00112 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 8 7 6 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 8 7 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 8 14 14 C 1.50696 * 109.46800 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00575 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99722 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99924 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47032 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47236 * 120.00183 * 18 16 14 21 21 H 1.48500 * 109.46924 * 239.99946 * 18 16 14 22 22 N 1.31963 * 120.83701 * 0.27507 * 7 6 5 23 23 H 1.09004 * 109.46677 * 60.00043 * 1 2 3 24 24 H 1.08994 * 109.47094 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46913 * 300.00722 * 1 2 3 26 26 H 1.07997 * 120.44641 * 0.03288 * 4 3 2 27 27 H 1.07998 * 120.75278 * 179.97438 * 5 4 3 28 28 H 1.07995 * 120.35837 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47153 * 59.99773 * 11 8 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 11 8 7 31 31 H 1.00902 * 111.00582 * 303.95797 * 12 11 8 32 32 H 1.08995 * 109.47167 * 300.00240 * 13 12 11 33 33 H 1.09003 * 109.46442 * 60.00214 * 13 12 11 34 34 H 0.96998 * 120.00185 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0005 5 6 4.0485 2.5132 0.0000 6 6 3.2505 3.6492 0.0005 7 6 1.8771 3.5097 0.0000 8 6 1.0045 4.7384 -0.0001 9 9 1.2727 5.5008 -1.1420 10 9 1.2717 5.5002 1.1425 11 6 -0.4669 4.3190 -0.0001 12 7 -1.3174 5.5167 0.0005 13 6 -2.7404 5.1518 -0.0001 14 6 -3.5798 6.4034 -0.0001 15 1 -3.1039 7.3729 -0.0001 16 6 -4.9555 6.3108 -0.0001 17 7 -5.5351 5.1302 -0.0007 18 14 -5.9961 7.8621 -0.0009 19 1 -5.1091 9.0531 -0.0007 20 1 -6.8531 7.8827 -1.2133 21 1 -6.8532 7.8837 1.2116 22 7 1.3186 2.3141 0.0044 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 4.0229 0.3696 -0.0015 27 1 5.1254 2.5947 0.0000 28 1 3.6993 4.6315 0.0006 29 1 -0.6755 3.7252 0.8899 30 1 -0.6754 3.7253 -0.8901 31 1 -1.0978 6.1159 0.7820 32 1 -2.9645 4.5645 -0.8905 33 1 -2.9649 4.5633 0.8895 34 1 -6.5029 5.0650 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591766646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:07 Heat of formation + Delta-G solvation = -118.935027 kcal Electronic energy + Delta-G solvation = -20741.266439 eV Core-core repulsion = 17116.602777 eV Total energy + Delta-G solvation = -3624.663662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.15452 -48.13427 -41.77142 -39.05713 -37.31598 -34.81359 -33.89862 -32.51081 -30.43667 -28.57877 -27.59397 -25.12280 -24.13627 -23.43807 -22.62019 -19.65586 -18.98621 -18.75428 -18.40695 -17.41301 -17.10781 -17.06808 -17.00805 -16.53290 -16.10890 -15.33435 -15.04992 -14.96097 -14.61727 -14.53725 -14.48016 -14.45072 -13.97521 -13.49929 -13.42466 -13.17430 -12.89001 -12.72624 -12.67896 -12.32796 -12.30171 -12.02725 -11.35478 -11.08229 -10.79252 -10.69828 -9.72925 -9.35545 -8.25700 -6.37196 -0.23433 0.16587 1.41062 1.41878 1.56293 1.92296 2.18405 2.38597 2.46664 2.85129 3.02035 3.08114 3.54168 3.59900 3.79559 3.89390 3.98434 4.19984 4.35345 4.39158 4.40668 4.48030 4.54781 4.73358 4.84362 4.97117 5.03613 5.15291 5.30848 5.54562 5.91412 6.05737 6.24328 6.50327 6.57544 6.79733 7.33391 8.86379 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.004386 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.509692 B = 6382.100837 C = 7292.177338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.310 6.310 3 C 0.299 3.701 4 C -0.161 4.161 5 C -0.026 4.026 6 C -0.169 4.169 7 C 0.081 3.919 8 C 0.357 3.643 9 F -0.185 7.185 10 F -0.191 7.191 11 C 0.045 3.955 12 N -0.689 5.689 13 C 0.212 3.788 14 C -0.539 4.539 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.976 3.024 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.275 1.275 22 N -0.539 5.539 23 H 0.049 0.951 24 H 0.128 0.872 25 H 0.049 0.951 26 H 0.180 0.820 27 H 0.198 0.802 28 H 0.160 0.840 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.338 0.662 32 H 0.005 0.995 33 H -0.032 1.032 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.646 -9.129 0.925 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.217 6.217 3 C 0.119 3.881 4 C -0.181 4.181 5 C -0.050 4.050 6 C -0.190 4.190 7 C -0.056 4.056 8 C 0.320 3.680 9 F -0.166 7.166 10 F -0.172 7.172 11 C -0.086 4.086 12 N -0.320 5.320 13 C 0.085 3.915 14 C -0.577 4.577 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.800 3.200 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.201 1.201 22 N -0.263 5.263 23 H 0.068 0.932 24 H 0.146 0.854 25 H 0.067 0.933 26 H 0.197 0.803 27 H 0.215 0.785 28 H 0.177 0.823 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.156 0.844 32 H 0.023 0.977 33 H -0.015 1.015 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.695 -9.443 0.242 21.843 hybrid contribution -0.612 0.551 0.860 1.191 sum 19.084 -8.891 1.102 21.082 Atomic orbital electron populations 1.23015 0.76210 1.04774 1.01820 1.86232 1.23758 1.23798 1.87871 1.20238 0.90682 0.84001 0.93195 1.21681 0.90785 1.01680 1.03984 1.21950 1.02767 0.89108 0.91223 1.22071 0.92158 1.02851 1.01925 1.20724 0.92980 0.90605 1.01250 1.19210 0.94639 0.82303 0.71893 1.93035 1.95047 1.77660 1.50839 1.93007 1.95176 1.77893 1.51116 1.22554 0.89119 0.93606 1.03335 1.60546 1.05735 1.16047 1.49664 1.19216 0.82886 0.95670 0.93715 1.21528 0.91697 0.93395 1.51109 0.91730 1.25953 0.99220 1.00002 0.94311 1.70088 1.10651 1.25233 1.51225 0.85232 0.78104 0.78769 0.77877 1.18747 1.20205 1.20079 1.66715 1.42405 0.98606 1.18566 0.93202 0.85400 0.93267 0.80284 0.78539 0.82275 0.93035 0.89276 0.84418 0.97690 1.01464 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.38 113.37 1.18 1.99 16 2 O -0.31 -7.28 10.48 -89.96 -0.94 -8.23 16 3 C 0.30 7.31 7.49 84.79 0.63 7.95 16 4 C -0.16 -2.62 10.04 22.47 0.23 -2.39 16 5 C -0.03 -0.35 10.17 22.45 0.23 -0.12 16 6 C -0.17 -3.47 9.62 22.37 0.22 -3.26 16 7 C 0.08 2.33 6.17 42.49 0.26 2.59 16 8 C 0.36 12.21 1.93 29.85 0.06 12.26 16 9 F -0.18 -6.66 16.89 44.97 0.76 -5.90 16 10 F -0.19 -6.48 16.44 44.97 0.74 -5.74 16 11 C 0.04 1.78 4.44 86.30 0.38 2.16 16 12 N -0.69 -32.37 6.41 -517.93 -3.32 -35.69 16 13 C 0.21 11.86 5.44 85.55 0.47 12.33 16 14 C -0.54 -31.73 9.32 25.60 0.24 -31.49 16 15 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 16 C 0.00 0.21 5.46 84.66 0.46 0.67 16 17 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 18 Si 0.98 44.96 29.54 68.60 2.03 46.99 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 N -0.54 -15.98 7.85 -296.98 -2.33 -18.31 16 23 H 0.05 1.22 8.11 -2.39 -0.02 1.20 16 24 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 26 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 27 H 0.20 0.78 8.06 -2.91 -0.02 0.75 16 28 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 29 H 0.05 2.07 8.05 -2.39 -0.02 2.05 16 30 H 0.09 3.67 8.06 -2.39 -0.02 3.65 16 31 H 0.34 15.34 8.25 -89.69 -0.74 14.60 16 32 H 0.00 0.30 8.14 -2.39 -0.02 0.28 16 33 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -70.67 307.96 1.95 -68.72 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.38 Total: 11.97 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 4.35 Total: 2.70 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -5.37 Total: -110.51 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.94 Total: -8.23 kcal Atomic # 9 Polarization: -13.14 SS G_CDS: 1.50 Total: -11.64 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -70.67 1.95 -68.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591766646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.214 kcal (2) G-P(sol) polarization free energy of solvation -70.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds