Wall clock time and date at job start Mon Mar 30 2020 01:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.50698 * 109.46561 * 119.99601 * 2 1 3 13 13 N 1.31126 * 126.55273 * 239.99770 * 12 2 1 14 14 C 1.34500 * 105.61958 * 180.02562 * 13 12 2 15 15 C 1.50696 * 126.28929 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47472 * 89.99411 * 15 14 13 17 17 C 1.53781 * 113.61659 * 272.49592 * 16 15 14 18 18 C 1.53778 * 87.08079 * 220.01738 * 17 16 15 19 19 F 1.39903 * 113.61555 * 270.88253 * 18 17 16 20 20 F 1.39903 * 113.61454 * 139.97898 * 18 17 16 21 21 C 1.53777 * 87.08526 * 25.43193 * 18 17 16 22 22 N 1.29940 * 107.41992 * 359.97438 * 14 13 12 23 23 O 1.21304 * 110.25582 * 359.70962 * 22 14 13 24 24 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 25 25 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 26 26 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.46877 * 209.99816 * 15 14 13 29 29 H 1.08998 * 109.47255 * 329.99387 * 15 14 13 30 30 H 1.09001 * 112.84907 * 43.80309 * 16 15 14 31 31 H 1.08995 * 113.61569 * 334.57084 * 17 16 15 32 32 H 1.09000 * 113.61142 * 105.46564 * 17 16 15 33 33 H 1.08997 * 113.62102 * 220.01697 * 21 18 17 34 34 H 1.09001 * 113.68985 * 89.12371 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 6 2.0322 -0.7103 1.2305 13 7 2.7891 -0.2007 2.1723 14 6 2.9816 -1.1934 3.0590 15 6 3.7882 -1.1107 4.3293 16 6 2.8832 -0.6670 5.4802 17 6 2.7744 0.8601 5.6249 18 6 2.8327 0.6414 7.1459 19 9 1.5776 0.4478 7.7328 20 9 3.6081 1.5913 7.8194 21 6 3.5828 -0.6680 6.8498 22 7 2.3435 -2.2366 2.6198 23 8 1.7864 -1.9784 1.5736 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 0.7043 1.1577 -3.4845 28 1 4.2106 -2.0897 4.5558 29 1 4.5942 -0.3881 4.2015 30 1 1.9197 -1.1768 5.4818 31 1 3.6348 1.3987 5.2279 32 1 1.8236 1.2649 5.2781 33 1 3.2847 -1.4969 7.4918 34 1 4.6644 -0.5487 6.7875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596600239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:32 Heat of formation + Delta-G solvation = -28.356445 kcal Electronic energy + Delta-G solvation = -20552.771188 eV Core-core repulsion = 16932.035308 eV Total energy + Delta-G solvation = -3620.735880 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.96070 -47.29867 -44.78898 -38.60602 -35.32140 -34.79289 -32.24103 -30.29696 -29.02784 -26.48298 -25.41933 -23.90012 -23.45900 -22.14043 -20.32213 -19.79540 -17.64055 -17.40786 -16.82581 -16.59920 -16.39320 -16.08310 -15.23957 -15.04172 -14.18974 -14.02678 -13.77265 -13.65620 -13.56434 -12.96465 -12.87038 -12.76647 -11.94797 -11.74374 -11.71161 -11.40320 -11.21372 -11.09985 -11.02443 -10.75865 -10.61859 -10.57759 -10.43805 -10.31946 -10.09698 -9.51690 -8.92253 -8.60063 -6.24951 -4.34678 1.93214 2.89981 3.23520 3.27840 3.29523 3.31602 3.57401 3.78189 3.94107 4.11414 4.13684 4.25788 4.39659 4.73601 5.07220 5.09818 5.11828 5.19942 5.23772 5.32857 5.53581 5.65272 5.68754 5.94066 6.07889 6.48029 6.54800 6.63841 6.80156 6.83387 7.34614 7.58942 7.76770 7.97174 8.64206 8.92504 9.31772 10.81085 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.038017 B = 0.003700 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.340265 B = 7565.758781 C = 7782.527336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.125 3.875 3 H 0.075 0.925 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.071 3.929 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.245 3.755 13 N -0.513 5.513 14 C 0.155 3.845 15 C -0.009 4.009 16 C -0.098 4.098 17 C -0.156 4.156 18 C 0.251 3.749 19 F -0.181 7.181 20 F -0.193 7.193 21 C -0.157 4.157 22 N -0.409 5.409 23 O 0.069 5.931 24 H 0.016 0.984 25 H 0.101 0.899 26 H 0.039 0.961 27 H 0.268 0.732 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 -1.243 14.851 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.105 3.895 3 H 0.093 0.907 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.132 4.132 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.027 3.973 13 N -0.247 5.247 14 C -0.118 4.118 15 C -0.047 4.047 16 C -0.118 4.118 17 C -0.194 4.194 18 C 0.215 3.785 19 F -0.162 7.162 20 F -0.173 7.173 21 C -0.195 4.195 22 N -0.122 5.122 23 O 0.014 5.986 24 H 0.035 0.965 25 H 0.120 0.880 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.889 -1.541 15.360 15.919 hybrid contribution 0.158 -0.296 -0.793 0.861 sum 4.047 -1.837 14.567 15.230 Atomic orbital electron populations 1.21860 0.95564 1.00656 1.01635 1.17829 0.93843 0.95254 0.82622 0.90732 1.20827 1.32927 1.13399 0.89216 0.92029 1.24874 0.94502 0.94807 0.99053 1.69839 1.35411 1.22466 1.24393 0.86444 0.79321 0.79771 0.81346 1.19873 1.20949 1.20040 1.30177 0.89459 0.80919 0.96741 1.71951 1.19516 1.29511 1.03760 1.25521 1.00686 0.86281 0.99355 1.19725 0.95439 1.03756 0.85814 1.22347 1.00243 0.95946 0.93266 1.24192 1.06473 0.97998 0.90688 1.22146 0.77279 0.89553 0.89566 1.93016 1.41772 1.95283 1.86129 1.93005 1.74223 1.66936 1.83170 1.24139 1.02094 0.95934 0.97362 1.74518 1.13903 1.24286 0.99460 1.85257 1.53949 1.30874 1.28480 0.96458 0.88027 0.94189 0.92244 0.88854 0.88500 0.87739 0.86404 0.88714 0.88669 0.86620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.95 37.16 0.33 -2.76 16 2 C 0.12 2.97 2.77 -92.92 -0.26 2.71 16 3 H 0.07 1.88 8.14 -51.93 -0.42 1.45 16 4 C -0.53 -13.56 8.55 -34.44 -0.29 -13.86 16 5 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 6 C 0.07 1.82 5.31 -17.82 -0.09 1.73 16 7 N -0.88 -23.18 11.31 55.43 0.63 -22.55 16 8 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 C 0.25 5.42 6.96 -13.06 -0.09 5.33 16 13 N -0.51 -10.54 11.55 -9.87 -0.11 -10.65 16 14 C 0.15 2.76 7.46 -156.37 -1.17 1.59 16 15 C -0.01 -0.10 5.68 -27.89 -0.16 -0.26 16 16 C -0.10 -1.06 3.61 -89.81 -0.32 -1.38 16 17 C -0.16 -1.69 7.42 -25.92 -0.19 -1.89 16 18 C 0.25 2.69 3.27 -25.92 -0.08 2.61 16 19 F -0.18 -2.25 17.38 2.25 0.04 -2.21 16 20 F -0.19 -2.26 17.41 2.25 0.04 -2.22 16 21 C -0.16 -1.32 7.43 -25.92 -0.19 -1.51 16 22 N -0.41 -8.08 12.16 30.90 0.38 -7.71 16 23 O 0.07 1.50 11.31 18.09 0.20 1.70 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.10 2.44 6.06 -51.93 -0.31 2.12 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.10 1.05 7.84 -51.93 -0.41 0.64 16 30 H 0.10 1.24 8.12 -51.93 -0.42 0.82 16 31 H 0.12 1.18 7.90 -51.93 -0.41 0.77 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.12 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -27.42 302.30 -5.87 -33.29 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -4.05 Total: -1.59 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.52 Total: -7.68 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.89 Total: -40.91 kcal Atomic # 8 Polarization: 1.50 SS G_CDS: 0.20 Total: 1.70 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.08 Total: -4.43 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.42 -5.87 -33.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596600239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.932 kcal (2) G-P(sol) polarization free energy of solvation -27.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds