Wall clock time and date at job start Mon Mar 30 2020 01:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.50698 * 109.46561 * 119.99601 * 2 1 3 13 13 N 1.31126 * 126.55273 * 239.99770 * 12 2 1 14 14 C 1.34500 * 105.61958 * 180.02562 * 13 12 2 15 15 C 1.50696 * 126.28929 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47472 * 89.99411 * 15 14 13 17 17 C 1.53781 * 113.61659 * 272.49592 * 16 15 14 18 18 C 1.53778 * 87.08079 * 220.01738 * 17 16 15 19 19 F 1.39903 * 113.61555 * 270.88253 * 18 17 16 20 20 F 1.39903 * 113.61454 * 139.97898 * 18 17 16 21 21 C 1.53777 * 87.08526 * 25.43193 * 18 17 16 22 22 N 1.29940 * 107.41992 * 359.97438 * 14 13 12 23 23 O 1.21304 * 110.25582 * 359.70962 * 22 14 13 24 24 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 25 25 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 26 26 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.46877 * 209.99816 * 15 14 13 29 29 H 1.08998 * 109.47255 * 329.99387 * 15 14 13 30 30 H 1.09001 * 112.84907 * 43.80309 * 16 15 14 31 31 H 1.08995 * 113.61569 * 334.57084 * 17 16 15 32 32 H 1.09000 * 113.61142 * 105.46564 * 17 16 15 33 33 H 1.08997 * 113.62102 * 220.01697 * 21 18 17 34 34 H 1.09001 * 113.68985 * 89.12371 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 6 2.0322 -0.7103 1.2305 13 7 2.7891 -0.2007 2.1723 14 6 2.9816 -1.1934 3.0590 15 6 3.7882 -1.1107 4.3293 16 6 2.8832 -0.6670 5.4802 17 6 2.7744 0.8601 5.6249 18 6 2.8327 0.6414 7.1459 19 9 1.5776 0.4478 7.7328 20 9 3.6081 1.5913 7.8194 21 6 3.5828 -0.6680 6.8498 22 7 2.3435 -2.2366 2.6198 23 8 1.7864 -1.9784 1.5736 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 0.7043 1.1577 -3.4845 28 1 4.2106 -2.0897 4.5558 29 1 4.5942 -0.3881 4.2015 30 1 1.9197 -1.1768 5.4818 31 1 3.6348 1.3987 5.2279 32 1 1.8236 1.2649 5.2781 33 1 3.2847 -1.4969 7.4918 34 1 4.6644 -0.5487 6.7875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596600239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:32 Heat of formation + Delta-G solvation = -43.800934 kcal Electronic energy + Delta-G solvation = -20553.440911 eV Core-core repulsion = 16932.035308 eV Total energy + Delta-G solvation = -3621.405603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.83773 -48.18647 -46.35968 -39.47661 -37.01938 -36.43999 -33.95968 -31.89313 -30.34773 -27.36683 -27.23747 -25.19543 -25.03480 -23.53006 -21.63180 -20.90824 -19.07954 -18.66400 -18.18863 -17.90634 -17.52730 -17.27759 -16.86235 -16.22169 -15.68222 -15.08526 -15.00087 -14.71390 -14.65235 -14.48001 -13.91955 -13.71426 -13.51049 -13.30429 -13.02807 -12.87305 -12.83967 -12.53692 -12.29064 -12.26172 -12.13380 -12.00481 -11.90393 -11.75239 -11.40087 -11.31750 -10.63193 -10.54557 -8.20987 -6.37656 0.30559 1.36497 1.47148 1.48139 1.56064 2.10156 2.40763 2.49276 2.70907 2.86068 3.08077 3.18815 3.25942 3.36599 3.50482 4.07812 4.19136 4.33217 4.49548 4.53423 4.59228 4.65930 4.71321 4.80996 4.82484 4.89446 4.93425 5.06561 5.11568 5.21953 5.41842 5.65533 5.84026 6.05414 6.63958 7.30773 7.31771 8.84353 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.038017 B = 0.003700 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.340265 B = 7565.758781 C = 7782.527336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.126 3.874 3 H 0.054 0.946 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.032 3.968 7 N -0.904 5.904 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.277 1.277 11 H -0.274 1.274 12 C 0.233 3.767 13 N -0.521 5.521 14 C 0.168 3.832 15 C -0.008 4.008 16 C -0.098 4.098 17 C -0.161 4.161 18 C 0.242 3.758 19 F -0.194 7.194 20 F -0.199 7.199 21 C -0.134 4.134 22 N -0.420 5.420 23 O 0.049 5.951 24 H 0.034 0.966 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.271 0.729 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.072 -1.953 15.769 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.106 3.894 3 H 0.072 0.928 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.170 4.170 7 N -0.541 5.541 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.199 1.199 12 C 0.014 3.986 13 N -0.256 5.256 14 C -0.105 4.105 15 C -0.047 4.047 16 C -0.117 4.117 17 C -0.199 4.199 18 C 0.206 3.794 19 F -0.175 7.175 20 F -0.179 7.179 21 C -0.171 4.171 22 N -0.136 5.136 23 O -0.001 6.001 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.109 0.891 31 H 0.146 0.854 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.174 -2.257 16.266 17.217 hybrid contribution -0.233 -0.028 -1.000 1.027 sum 4.941 -2.285 15.266 16.207 Atomic orbital electron populations 1.21701 0.94714 1.00634 1.01572 1.17601 0.94562 0.94193 0.83075 0.92769 1.21021 1.33316 1.13469 0.90476 0.92960 1.25566 0.94559 0.95388 1.01453 1.69930 1.35863 1.23252 1.25104 0.85548 0.78697 0.78830 0.78279 1.19534 1.20175 1.19902 1.29806 0.90423 0.81438 0.96907 1.71969 1.19205 1.30374 1.04023 1.26496 0.99319 0.84706 0.99965 1.20085 0.95289 1.05954 0.83336 1.22243 0.99847 0.95410 0.94238 1.24270 1.06123 0.98363 0.91112 1.22387 0.77135 0.90834 0.89044 1.92990 1.42844 1.95382 1.86316 1.92993 1.74259 1.67427 1.83263 1.24108 1.03100 0.94731 0.95201 1.74515 1.14862 1.24997 0.99181 1.85239 1.54787 1.30599 1.29466 0.94712 0.89759 0.94091 0.92001 0.86361 0.86527 0.89113 0.85353 0.90378 0.87058 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.95 71.98 0.64 -5.13 16 2 C 0.13 6.12 2.77 -12.29 -0.03 6.08 16 3 H 0.05 2.82 8.14 -2.39 -0.02 2.80 16 4 C -0.54 -28.50 8.55 25.60 0.22 -28.28 16 5 H 0.05 2.77 7.74 -2.92 -0.02 2.74 16 6 C 0.03 1.64 5.31 84.66 0.45 2.09 16 7 N -0.90 -47.71 11.31 21.45 0.24 -47.47 16 8 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 12 C 0.23 10.38 6.96 88.38 0.61 10.99 16 13 N -0.52 -21.11 11.55 -303.19 -3.50 -24.61 16 14 C 0.17 5.76 7.46 138.46 1.03 6.79 16 15 C -0.01 -0.17 5.68 29.85 0.17 -0.01 16 16 C -0.10 -1.86 3.61 -10.27 -0.04 -1.90 16 17 C -0.16 -3.25 7.42 31.12 0.23 -3.02 16 18 C 0.24 4.73 3.27 31.12 0.10 4.83 16 19 F -0.19 -4.61 17.38 44.97 0.78 -3.83 16 20 F -0.20 -4.28 17.41 44.97 0.78 -3.50 16 21 C -0.13 -1.77 7.43 31.12 0.23 -1.54 16 22 N -0.42 -16.23 12.16 -60.30 -0.73 -16.97 16 23 O 0.05 2.12 11.31 74.79 0.85 2.96 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 4.11 6.06 -2.38 -0.01 4.10 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 28 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.12 2.08 7.84 -2.39 -0.02 2.06 16 30 H 0.09 2.01 8.12 -2.39 -0.02 1.99 16 31 H 0.13 2.30 7.90 -2.39 -0.02 2.28 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.14 1.18 8.10 -2.39 -0.02 1.16 16 Total: -1.00 -58.83 302.30 5.19 -53.65 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.12 Total: 5.87 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 3.62 Total: -9.08 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -3.99 Total: -89.05 kcal Atomic # 8 Polarization: 2.12 SS G_CDS: 0.85 Total: 2.96 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 1.56 Total: -7.33 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -58.83 5.19 -53.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596600239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.845 kcal (2) G-P(sol) polarization free energy of solvation -58.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds