Wall clock time and date at job start Mon Mar 30 2020 00:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31007 * 1 3 3 Si 1.86801 * 119.99801 * 2 1 4 4 H 1.48498 * 109.47196 * 275.28823 * 3 2 1 5 5 H 1.48502 * 109.47124 * 35.28316 * 3 2 1 6 6 H 1.48492 * 109.47565 * 155.28314 * 3 2 1 7 7 C 1.39602 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99736 * 337.37262 * 7 2 1 9 9 N 1.36117 * 120.00279 * 157.38057 * 7 2 1 10 10 C 1.34776 * 119.99828 * 320.65488 * 9 7 2 11 11 O 1.21592 * 120.00195 * 2.60967 * 10 9 7 12 12 C 1.48083 * 120.00327 * 182.60973 * 10 9 7 13 13 N 1.33752 * 120.60779 * 354.20765 * 12 10 9 14 14 C 1.30673 * 122.62883 * 179.97438 * 13 12 10 15 15 N 1.34222 * 123.39478 * 359.97438 * 14 13 12 16 16 H 0.96996 * 120.19938 * 179.97438 * 15 14 13 17 17 C 1.37122 * 119.59963 * 0.02562 * 15 14 13 18 18 N 1.31676 * 135.91273 * 179.97438 * 17 15 14 19 19 C 1.33493 * 110.80646 * 180.02562 * 18 17 15 20 20 C 1.36135 * 110.87190 * 359.97438 * 19 18 17 21 21 C 1.39908 * 120.61337 * 174.19862 * 12 10 9 22 22 C 1.46496 * 120.00375 * 140.65120 * 9 7 2 23 23 C 1.52997 * 117.49969 * 1.43914 * 22 9 7 24 24 C 1.52996 * 60.00097 * 252.50426 * 23 22 9 25 25 H 0.96998 * 120.00340 * 0.02562 * 1 2 3 26 26 H 1.08004 * 118.30580 * 179.97438 * 14 13 12 27 27 H 1.08006 * 124.55969 * 180.02562 * 19 18 17 28 28 H 1.08000 * 126.72573 * 179.97438 * 20 19 18 29 29 H 1.08999 * 115.55300 * 147.14181 * 22 9 7 30 30 H 1.09004 * 117.49827 * 359.97438 * 23 22 9 31 31 H 1.08998 * 117.50501 * 145.01714 * 23 22 9 32 32 H 1.09000 * 117.50229 * 252.50755 * 24 23 22 33 33 H 1.09008 * 117.51870 * 107.47484 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 2.3798 2.1110 -1.3941 5 1 1.5017 2.6179 0.8087 6 1 3.5929 1.4107 0.5854 7 6 2.0081 -1.2090 -0.0005 8 1 1.5305 -2.1084 0.3589 9 7 3.2908 -1.2541 -0.4539 10 6 3.6492 -0.5331 -1.5347 11 8 2.8392 0.1943 -2.0763 12 6 5.0295 -0.6266 -2.0627 13 7 5.9614 -1.3313 -1.4117 14 6 7.1905 -1.4407 -1.8418 15 7 7.6329 -0.8619 -2.9691 16 1 8.5561 -0.9736 -3.2450 17 6 6.7723 -0.1109 -3.7278 18 7 6.8527 0.5767 -4.8478 19 6 5.6774 1.1343 -5.1473 20 6 4.7415 0.8277 -4.2075 21 6 5.3828 0.0204 -3.2519 22 6 4.2817 -2.0863 0.2329 23 6 3.8051 -2.9069 1.4330 24 6 4.6883 -1.6765 1.6498 25 1 -0.4850 0.8400 -0.0004 26 1 7.8864 -2.0272 -1.2602 27 1 5.4936 1.7456 -6.0186 28 1 3.7089 1.1438 -4.1971 29 1 5.0498 -2.5250 -0.4040 30 1 2.7544 -2.8273 1.7118 31 1 4.2595 -3.8858 1.5858 32 1 5.7238 -1.8459 1.9452 33 1 4.2188 -0.7874 2.0708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:37 Heat of formation + Delta-G solvation = 130.749455 kcal Electronic energy + Delta-G solvation = -21025.142692 eV Core-core repulsion = 17861.995348 eV Total energy + Delta-G solvation = -3163.147344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41078 -39.16177 -38.17243 -36.40179 -34.63756 -33.20035 -31.72360 -29.96950 -28.62882 -26.31551 -24.10072 -23.17275 -21.98493 -21.39923 -20.81354 -19.65790 -18.33627 -17.76382 -16.77745 -16.36327 -15.80541 -15.54798 -15.10202 -14.79913 -14.00986 -13.66692 -13.41976 -13.27265 -12.72534 -12.61058 -12.50627 -12.00078 -11.70450 -11.39166 -11.15082 -10.88290 -10.46578 -10.30881 -10.20065 -9.89945 -9.30807 -9.23880 -8.75907 -8.59089 -8.19246 -7.71901 -7.43969 -6.58019 -4.10096 0.10004 1.78081 2.50461 3.10304 3.40592 3.48387 3.59311 3.79486 3.91399 4.14454 4.23771 4.38287 4.58176 4.65460 4.88753 4.97667 5.18827 5.39888 5.58602 5.68511 5.75332 5.86274 5.98697 6.17601 6.34821 6.44402 6.70652 6.77709 6.80317 6.95163 7.06410 7.43618 7.47388 7.64723 7.86757 8.35413 8.43705 8.66966 9.02775 9.61459 10.40899 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.008768 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.325299 B = 3192.680609 C = 4232.112299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.091 3.909 3 Si 0.923 3.077 4 H -0.242 1.242 5 H -0.307 1.307 6 H -0.279 1.279 7 C -0.318 4.318 8 H 0.110 0.890 9 N -0.383 5.383 10 C 0.447 3.553 11 O -0.538 6.538 12 C 0.221 3.779 13 N -0.518 5.518 14 C 0.342 3.658 15 N -0.534 5.534 16 H 0.418 0.582 17 C 0.230 3.770 18 N -0.524 5.524 19 C 0.023 3.977 20 C -0.179 4.179 21 C -0.176 4.176 22 C 0.060 3.940 23 C -0.186 4.186 24 C -0.188 4.188 25 H 0.283 0.717 26 H 0.211 0.789 27 H 0.157 0.843 28 H 0.147 0.853 29 H 0.157 0.843 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.400 -4.477 0.439 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.125 4.125 3 Si 0.754 3.246 4 H -0.167 1.167 5 H -0.237 1.237 6 H -0.205 1.205 7 C -0.445 4.445 8 H 0.127 0.873 9 N -0.097 5.097 10 C 0.241 3.759 11 O -0.422 6.422 12 C 0.089 3.911 13 N -0.241 5.241 14 C 0.058 3.942 15 N -0.141 5.141 16 H 0.256 0.744 17 C -0.021 4.021 18 N -0.244 5.244 19 C -0.119 4.119 20 C -0.203 4.203 21 C -0.189 4.189 22 C -0.045 4.045 23 C -0.224 4.224 24 C -0.226 4.226 25 H 0.093 0.907 26 H 0.227 0.773 27 H 0.174 0.826 28 H 0.165 0.835 29 H 0.173 0.827 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.222 -4.241 0.235 14.843 hybrid contribution 0.281 0.969 -0.151 1.020 sum 14.503 -3.272 0.084 14.868 Atomic orbital electron populations 1.69572 1.07492 1.29708 1.38529 1.25595 0.95055 1.00442 0.91382 0.86172 0.78866 0.80614 0.78987 1.16723 1.23708 1.20458 1.19216 0.85873 0.96986 1.42461 0.87272 1.43137 1.08761 1.36947 1.20888 1.17535 0.85947 0.89490 0.82902 1.90626 1.50069 1.41179 1.60364 1.21704 0.93115 0.86939 0.89389 1.68374 0.99931 1.23231 1.32564 1.24885 0.94176 0.91482 0.83621 1.41703 1.13792 1.39110 1.19464 0.74412 1.20360 0.88189 0.98838 0.94682 1.69359 1.27433 1.14928 1.12722 1.22374 0.88364 1.01327 0.99864 1.21530 1.00939 1.02460 0.95334 1.20594 0.94048 1.05889 0.98319 1.22785 0.94910 0.98203 0.88587 1.23218 1.01354 0.94618 1.03172 1.23132 0.99132 0.99323 1.01004 0.90695 0.77280 0.82559 0.83547 0.82669 0.87605 0.89303 0.89322 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.43 13.94 55.53 0.77 -22.66 16 2 C 0.09 2.53 4.77 -17.39 -0.08 2.45 16 3 Si 0.92 24.13 24.80 -169.99 -4.22 19.91 16 4 H -0.24 -6.71 6.17 56.52 0.35 -6.36 16 5 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.32 -8.44 8.74 -15.14 -0.13 -8.58 16 8 H 0.11 2.94 6.95 -52.49 -0.36 2.57 16 9 N -0.38 -9.13 2.52 -108.75 -0.27 -9.40 16 10 C 0.45 11.16 6.03 -12.22 -0.07 11.09 16 11 O -0.54 -15.12 10.37 5.28 0.05 -15.06 16 12 C 0.22 4.63 6.73 -82.37 -0.55 4.08 16 13 N -0.52 -8.20 6.03 -10.68 -0.06 -8.27 16 14 C 0.34 3.55 12.24 -90.97 -1.11 2.44 16 15 N -0.53 -6.09 5.33 -12.01 -0.06 -6.15 16 16 H 0.42 2.93 8.93 -40.82 -0.36 2.57 16 17 C 0.23 4.05 8.72 -154.02 -1.34 2.71 16 18 N -0.52 -9.88 11.16 -10.90 -0.12 -10.00 16 19 C 0.02 0.44 11.71 -17.59 -0.21 0.24 16 20 C -0.18 -3.80 10.25 -39.46 -0.40 -4.21 16 21 C -0.18 -3.70 6.19 -104.64 -0.65 -4.35 16 22 C 0.06 1.12 5.17 -67.93 -0.35 0.77 16 23 C -0.19 -3.05 9.79 -26.73 -0.26 -3.31 16 24 C -0.19 -3.11 10.38 -26.73 -0.28 -3.39 16 25 H 0.28 7.55 8.30 -40.82 -0.34 7.21 16 26 H 0.21 0.79 8.06 -52.48 -0.42 0.37 16 27 H 0.16 2.44 8.06 -52.48 -0.42 2.02 16 28 H 0.15 3.28 7.39 -52.49 -0.39 2.89 16 29 H 0.16 2.57 5.27 -52.03 -0.27 2.29 16 30 H 0.11 1.95 6.50 -51.93 -0.34 1.61 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 LS Contribution 279.15 15.07 4.21 4.21 Total: -1.00 -35.52 279.15 -8.18 -43.70 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.03 Total: 3.80 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -5.45 Total: -0.07 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.25 Total: -56.48 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.05 Total: -15.06 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -4.22 Total: 19.91 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -35.52 -8.18 -43.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.451 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds