Wall clock time and date at job start Mon Mar 30 2020 00:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31243 * 1 3 3 Si 1.86803 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47122 * 89.99726 * 3 2 1 5 5 H 1.48494 * 109.47544 * 210.00442 * 3 2 1 6 6 H 1.48507 * 109.46889 * 330.00427 * 3 2 1 7 7 C 1.39226 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00448 * 179.75704 * 7 2 1 9 9 N 1.36562 * 120.00206 * 359.75337 * 7 2 1 10 10 C 1.34777 * 120.00327 * 145.51309 * 9 7 2 11 11 O 1.21674 * 119.99798 * 355.33387 * 10 9 7 12 12 C 1.47214 * 120.00101 * 175.32703 * 10 9 7 13 13 C 1.38103 * 120.68248 * 24.59460 * 12 10 9 14 14 C 1.40000 * 119.10962 * 179.69729 * 13 12 10 15 15 N 1.31203 * 120.47062 * 0.60254 * 14 13 12 16 16 C 1.33686 * 121.36940 * 359.68702 * 15 14 13 17 17 C 1.39099 * 132.47731 * 180.02562 * 16 15 14 18 18 C 1.38522 * 107.66784 * 179.97438 * 17 16 15 19 19 N 1.31508 * 109.03721 * 0.02562 * 18 17 16 20 20 N 1.37268 * 120.74305 * 359.97438 * 16 15 14 21 21 C 1.46505 * 119.99829 * 325.52199 * 9 7 2 22 22 C 1.52992 * 117.49846 * 308.73512 * 21 9 7 23 23 C 1.52998 * 60.00354 * 252.51006 * 22 21 9 24 24 H 0.96998 * 120.00478 * 355.01400 * 1 2 3 25 25 H 1.08001 * 120.44382 * 359.97168 * 13 12 10 26 26 H 1.07996 * 119.76643 * 180.30886 * 14 13 12 27 27 H 1.07998 * 126.16229 * 359.94275 * 17 16 15 28 28 H 1.08002 * 125.48091 * 179.97438 * 18 17 16 29 29 H 1.08998 * 115.54767 * 94.44546 * 21 9 7 30 30 H 1.09008 * 117.50043 * 0.02562 * 22 21 9 31 31 H 1.09000 * 117.50259 * 145.02178 * 22 21 9 32 32 H 1.08991 * 117.50226 * 252.51091 * 23 22 21 33 33 H 1.09000 * 117.49758 * 107.48535 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 2.4939 2.0465 1.4001 5 1 3.5439 1.4403 -0.7001 6 1 1.4438 2.6527 -0.7000 7 6 2.0086 -1.2057 -0.0005 8 1 3.0886 -1.2058 -0.0045 9 7 1.3259 -2.3884 0.0040 10 6 1.8197 -3.4542 -0.6569 11 8 2.8288 -3.3403 -1.3271 12 6 1.1383 -4.7561 -0.5677 13 6 -0.2083 -4.8277 -0.2696 14 6 -0.8245 -6.0829 -0.1993 15 7 -0.1299 -7.1773 -0.4021 16 6 1.1757 -7.1304 -0.6861 17 6 2.1182 -8.1217 -0.9389 18 6 3.3317 -7.4972 -1.1763 19 7 3.1704 -6.1956 -1.0800 20 7 1.8317 -5.9279 -0.7748 21 6 0.0566 -2.4987 0.7272 22 6 0.0322 -2.0377 2.1858 23 6 -0.0272 -3.5301 1.8542 24 1 -0.4851 0.8368 0.0730 25 1 -0.7793 -3.9273 -0.0973 26 1 -1.8780 -6.1510 0.0281 27 1 1.9366 -9.1862 -0.9480 28 1 4.2609 -7.9987 -1.4031 29 1 -0.8403 -2.3309 0.1309 30 1 0.9605 -1.6519 2.6073 31 1 -0.8808 -1.5662 2.5495 32 1 -0.9791 -4.0405 1.9996 33 1 0.8622 -4.1266 2.0576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599155270.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:03 Heat of formation + Delta-G solvation = 127.185303 kcal Electronic energy + Delta-G solvation = -20991.970458 eV Core-core repulsion = 17828.668561 eV Total energy + Delta-G solvation = -3163.301897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.24927 -40.99922 -38.80535 -38.09091 -35.42948 -34.56704 -33.25864 -31.97332 -30.11519 -27.79100 -26.02673 -24.54321 -23.79117 -23.01148 -22.78051 -21.00887 -19.18344 -18.86727 -18.61229 -17.58895 -17.29315 -16.93493 -16.71553 -15.90661 -15.65941 -15.30329 -15.06433 -14.97865 -14.18195 -13.99291 -13.76272 -13.57773 -13.23936 -13.01802 -12.75697 -12.31084 -12.19439 -12.10947 -12.04868 -11.64351 -11.19402 -11.16413 -10.85293 -10.43192 -10.23771 -9.79064 -8.88684 -8.44062 -6.17547 -0.75952 -0.04459 0.98668 1.34846 1.39699 1.48626 1.60045 2.00805 2.13903 2.50741 2.57855 2.83811 2.97256 3.11332 3.34913 3.45307 3.98110 4.06636 4.09574 4.24889 4.29003 4.44111 4.47297 4.65135 4.78029 4.88447 5.08032 5.12245 5.26637 5.32047 5.38277 5.47270 5.58643 5.95537 6.35217 6.50011 6.62284 6.99057 7.14863 7.77620 8.56443 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027638 B = 0.006514 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.842586 B = 4297.196198 C = 5013.871251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.027 3.973 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.345 4.345 8 H 0.061 0.939 9 N -0.391 5.391 10 C 0.457 3.543 11 O -0.609 6.609 12 C 0.133 3.867 13 C -0.184 4.184 14 C 0.193 3.807 15 N -0.472 5.472 16 C 0.227 3.773 17 C -0.270 4.270 18 C 0.072 3.928 19 N -0.348 5.348 20 N -0.304 5.304 21 C 0.079 3.921 22 C -0.143 4.143 23 C -0.180 4.180 24 H 0.283 0.717 25 H 0.208 0.792 26 H 0.244 0.756 27 H 0.191 0.809 28 H 0.232 0.768 29 H 0.133 0.867 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 -8.731 4.510 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.473 4.473 8 H 0.079 0.921 9 N -0.107 5.107 10 C 0.247 3.753 11 O -0.496 6.496 12 C 0.015 3.985 13 C -0.208 4.208 14 C 0.010 3.990 15 N -0.184 5.184 16 C -0.001 4.001 17 C -0.300 4.300 18 C -0.105 4.105 19 N -0.172 5.172 20 N -0.078 5.078 21 C -0.024 4.024 22 C -0.180 4.180 23 C -0.217 4.217 24 H 0.093 0.907 25 H 0.224 0.776 26 H 0.260 0.740 27 H 0.208 0.792 28 H 0.248 0.752 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.168 0.832 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.348 -8.310 4.040 11.805 hybrid contribution 1.115 1.120 -0.242 1.599 sum -6.233 -7.190 3.798 10.245 Atomic orbital electron populations 1.69734 1.06273 1.29675 1.43364 1.26014 0.96515 1.01490 0.94094 0.85107 0.77943 0.77283 0.79139 1.18531 1.21083 1.18989 1.19406 0.91345 0.83129 1.53415 0.92057 1.42969 1.19638 1.08416 1.39726 1.18012 0.88007 0.84681 0.84642 1.90689 1.28839 1.85065 1.44977 1.20981 0.92925 0.85484 0.99083 1.23749 0.91004 1.04435 1.01657 1.24300 1.02301 0.84718 0.87692 1.68007 1.02369 1.32461 1.15609 1.21420 0.90868 0.85742 1.02021 1.21364 0.90021 0.99902 1.18742 1.24590 1.00860 0.89744 0.95276 1.78221 0.91701 1.18758 1.28567 1.47258 1.09041 1.05956 1.45507 1.21832 0.87411 1.04248 0.88918 1.22994 1.02651 0.95739 0.96648 1.23762 1.03932 0.92351 1.01667 0.90667 0.77626 0.74034 0.79203 0.75154 0.85010 0.91728 0.86548 0.83174 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -39.79 10.89 21.71 0.24 -39.56 16 2 C 0.03 1.30 5.18 85.02 0.44 1.75 16 3 Si 0.98 40.27 29.56 68.60 2.03 42.30 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.34 -18.97 8.66 84.19 0.73 -18.24 16 8 H 0.06 3.72 7.67 -2.91 -0.02 3.70 16 9 N -0.39 -19.63 2.89 -617.11 -1.78 -21.41 16 10 C 0.46 24.37 7.46 86.60 0.65 25.02 16 11 O -0.61 -38.58 16.25 -4.27 -0.07 -38.65 16 12 C 0.13 5.74 6.06 40.55 0.25 5.99 16 13 C -0.18 -5.55 6.47 22.67 0.15 -5.41 16 14 C 0.19 4.45 11.25 85.21 0.96 5.41 16 15 N -0.47 -14.05 10.43 -192.70 -2.01 -16.06 16 16 C 0.23 8.19 7.93 133.25 1.06 9.24 16 17 C -0.27 -8.32 10.91 22.54 0.25 -8.08 16 18 C 0.07 2.39 11.94 84.81 1.01 3.40 16 19 N -0.35 -15.74 11.93 -57.54 -0.69 -16.42 16 20 N -0.30 -13.27 3.93 -181.29 -0.71 -13.98 16 21 C 0.08 3.01 2.05 44.99 0.09 3.10 16 22 C -0.14 -4.87 9.29 30.59 0.28 -4.58 16 23 C -0.18 -5.26 6.93 30.59 0.21 -5.04 16 24 H 0.28 12.15 8.31 -92.71 -0.77 11.38 16 25 H 0.21 5.47 3.68 -2.91 -0.01 5.46 16 26 H 0.24 2.36 8.06 -2.91 -0.02 2.34 16 27 H 0.19 4.35 8.06 -2.91 -0.02 4.32 16 28 H 0.23 5.13 8.06 -2.91 -0.02 5.11 16 29 H 0.13 4.74 6.83 -2.39 -0.02 4.73 16 30 H 0.06 2.56 8.08 -2.38 -0.02 2.55 16 31 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 32 H 0.15 2.83 7.80 -2.39 -0.02 2.81 16 33 H 0.06 2.10 7.81 -2.39 -0.02 2.08 16 Total: -1.00 -78.40 283.83 4.23 -74.17 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.15 Total: 17.06 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 6.07 Total: 12.55 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -4.96 Total: -107.43 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.07 Total: -38.65 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -78.40 4.23 -74.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599155270.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.356 kcal (2) G-P(sol) polarization free energy of solvation -78.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds