Wall clock time and date at job start Mon Mar 30 2020 01:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38069 * 126.31956 * 2 1 4 4 C 1.47349 * 126.41730 * 359.97438 * 3 2 1 5 5 O 1.21630 * 119.99560 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00158 * 179.97438 * 4 3 2 7 7 C 1.36971 * 119.99978 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99929 * 359.97438 * 7 6 4 9 9 C 1.38984 * 120.00038 * 179.97438 * 7 6 4 10 10 N 1.31411 * 119.99972 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 119.99932 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47134 * 89.99981 * 11 9 7 13 13 H 1.48506 * 109.47216 * 209.99886 * 11 9 7 14 14 H 1.48507 * 109.47314 * 329.99964 * 11 9 7 15 15 C 1.41405 * 107.17143 * 179.97438 * 3 2 1 16 16 N 1.30438 * 108.08159 * 0.02562 * 15 3 2 17 17 N 1.34645 * 126.31945 * 180.02562 * 2 1 3 18 18 C 1.39804 * 125.77631 * 0.02791 * 17 2 1 19 19 C 1.38947 * 119.68587 * 154.72974 * 18 17 2 20 20 C 1.38423 * 119.10549 * 179.79855 * 19 18 17 21 21 C 1.38797 * 118.48209 * 0.47334 * 20 19 18 22 22 C 1.38129 * 119.29369 * 359.74672 * 21 20 19 23 23 N 1.31892 * 120.84230 * 0.02767 * 22 21 20 24 24 H 1.08999 * 109.47096 * 89.97404 * 1 2 3 25 25 H 1.08999 * 109.47183 * 209.97148 * 1 2 3 26 26 H 1.08997 * 109.47207 * 329.97432 * 1 2 3 27 27 H 0.97005 * 119.99897 * 359.97438 * 6 4 3 28 28 H 0.97000 * 119.99794 * 180.02562 * 10 9 7 29 29 H 1.07998 * 125.95845 * 179.74113 * 15 3 2 30 30 H 1.07998 * 120.44922 * 0.02562 * 19 18 17 31 31 H 1.07996 * 120.76417 * 180.24131 * 20 19 18 32 32 H 1.07994 * 120.35527 * 179.72895 * 21 20 19 33 33 H 1.08000 * 119.58252 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3248 1.1125 0.0000 4 6 1.8876 2.5196 -0.0005 5 8 0.7012 2.7876 -0.0015 6 7 2.8022 3.5095 0.0001 7 6 2.3956 4.8175 0.0001 8 1 1.3422 5.0556 -0.0008 9 6 3.3388 5.8383 0.0012 10 7 2.9488 7.0932 0.0008 11 14 5.1608 5.4265 0.0035 12 1 5.6453 5.3174 -1.3960 13 1 5.9101 6.5001 0.7044 14 1 5.3755 4.1347 0.7038 15 6 3.6607 0.6486 0.0006 16 7 3.6364 -0.6555 0.0004 17 7 2.3046 -1.0849 -0.0005 18 6 1.8748 -2.4152 -0.0016 19 6 2.7021 -3.4052 -0.5173 20 6 2.2663 -4.7190 -0.5086 21 6 1.0085 -4.9957 0.0089 22 6 0.2374 -3.9606 0.5008 23 7 0.6818 -2.7189 0.4832 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5142 27 1 3.7483 3.2956 0.0012 28 1 3.6070 7.8057 0.0012 29 1 4.5465 1.2664 -0.0032 30 1 3.6737 -3.1536 -0.9162 31 1 2.8891 -5.5102 -0.8991 32 1 0.6365 -6.0094 0.0265 33 1 -0.7422 -4.1705 0.9042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604537779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:17 Heat of formation + Delta-G solvation = 92.991569 kcal Electronic energy + Delta-G solvation = -19729.663073 eV Core-core repulsion = 16564.878424 eV Total energy + Delta-G solvation = -3164.784649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.64261 -40.07168 -37.90834 -34.10286 -33.83677 -32.80916 -31.77340 -31.59355 -29.62662 -27.23142 -25.01355 -24.04944 -23.81917 -21.62844 -20.70534 -19.20641 -18.19273 -17.62434 -16.76368 -16.34486 -15.58415 -15.50358 -14.96392 -14.55443 -14.26593 -13.98273 -13.65357 -13.47679 -13.14527 -12.79889 -12.70863 -12.47371 -12.32375 -12.06663 -11.75669 -11.21700 -10.80787 -10.56873 -10.49401 -10.19337 -9.97613 -9.73267 -9.58442 -8.83628 -8.54499 -8.25501 -8.13332 -6.32339 -3.79306 0.48387 0.87253 1.93291 2.12758 2.48605 3.05381 3.09802 3.16719 3.46739 4.08526 4.10692 4.30912 4.33786 4.55195 4.66019 4.76418 4.79261 4.95968 5.15367 5.32895 5.37134 5.40615 5.59566 5.72179 5.80147 5.96041 6.04414 6.16391 6.38904 6.47461 6.60604 7.14289 7.33975 7.57780 7.80079 8.16358 8.61208 8.94838 9.42944 9.86579 10.80322 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039819 B = 0.004232 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.018608 B = 6614.653095 C = 7261.243319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.160 3.840 3 C -0.255 4.255 4 C 0.524 3.476 5 O -0.578 6.578 6 N -0.578 5.578 7 C -0.299 4.299 8 H 0.123 0.877 9 C 0.041 3.959 10 N -0.877 5.877 11 Si 0.877 3.123 12 H -0.269 1.269 13 H -0.275 1.275 14 H -0.268 1.268 15 C 0.090 3.910 16 N -0.297 5.297 17 N -0.327 5.327 18 C 0.377 3.623 19 C -0.162 4.162 20 C -0.054 4.054 21 C -0.189 4.189 22 C 0.130 3.870 23 N -0.498 5.498 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.370 0.630 28 H 0.274 0.726 29 H 0.194 0.806 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -23.810 -0.737 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.034 3.966 3 C -0.269 4.269 4 C 0.311 3.689 5 O -0.462 6.462 6 N -0.215 5.215 7 C -0.428 4.428 8 H 0.140 0.860 9 C -0.162 4.162 10 N -0.517 5.517 11 Si 0.703 3.297 12 H -0.194 1.194 13 H -0.200 1.200 14 H -0.193 1.193 15 C -0.100 4.100 16 N -0.115 5.115 17 N -0.104 5.104 18 C 0.150 3.850 19 C -0.185 4.185 20 C -0.081 4.081 21 C -0.210 4.210 22 C -0.028 4.028 23 N -0.211 5.211 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.125 0.875 27 H 0.203 0.797 28 H 0.085 0.915 29 H 0.210 0.790 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.048 -23.794 -0.411 23.798 hybrid contribution 1.788 -0.002 -0.300 1.813 sum 1.836 -23.796 -0.711 23.877 Atomic orbital electron populations 1.20864 0.85643 1.05879 1.03696 1.21694 0.95360 0.84792 0.94720 1.20564 0.91922 0.95322 1.19065 1.16541 0.86057 0.82373 0.83906 1.90604 1.16214 1.83397 1.55991 1.41994 1.06892 1.06482 1.66123 1.19470 0.97055 0.78837 1.47425 0.85985 1.25054 0.98580 0.94975 0.97600 1.69619 1.34714 0.98572 1.48746 0.86701 0.85176 0.78766 0.79050 1.19417 1.20048 1.19297 1.24273 0.98126 0.91596 0.95960 1.77154 0.93972 1.13490 1.26845 1.45322 1.05134 1.02624 1.57357 1.17750 0.90561 0.82157 0.94544 1.21704 1.02047 0.92528 1.02206 1.21522 0.95550 0.95812 0.95183 1.22156 0.95673 1.01221 1.01928 1.22619 0.99581 0.85963 0.94638 1.67037 1.14046 1.23017 1.17032 0.90644 0.88820 0.87543 0.79698 0.91517 0.78960 0.83588 0.83957 0.84138 0.81624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 9.42 36.01 0.34 -1.39 16 2 C 0.16 2.98 6.95 -81.42 -0.57 2.41 16 3 C -0.26 -5.15 6.13 -105.05 -0.64 -5.79 16 4 C 0.52 12.68 7.76 -12.55 -0.10 12.58 16 5 O -0.58 -15.72 14.42 5.25 0.08 -15.64 16 6 N -0.58 -14.17 5.08 -11.97 -0.06 -14.23 16 7 C -0.30 -8.48 10.16 -14.98 -0.15 -8.64 16 8 H 0.12 3.92 7.38 -52.49 -0.39 3.53 16 9 C 0.04 1.13 5.50 -17.46 -0.10 1.04 16 10 N -0.88 -25.48 13.96 55.50 0.77 -24.70 16 11 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.27 -5.33 6.52 56.52 0.37 -4.97 16 15 C 0.09 1.54 11.50 -16.94 -0.19 1.35 16 16 N -0.30 -5.04 12.00 30.88 0.37 -4.67 16 17 N -0.33 -5.54 3.73 -8.00 -0.03 -5.57 16 18 C 0.38 5.36 7.34 -154.38 -1.13 4.22 16 19 C -0.16 -1.82 9.73 -39.25 -0.38 -2.20 16 20 C -0.05 -0.42 10.17 -39.31 -0.40 -0.82 16 21 C -0.19 -1.31 10.11 -39.41 -0.40 -1.71 16 22 C 0.13 1.14 11.18 -17.57 -0.20 0.95 16 23 N -0.50 -6.43 7.58 -12.29 -0.09 -6.53 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.09 1.40 5.80 -51.93 -0.30 1.10 16 26 H 0.11 2.00 6.51 -51.93 -0.34 1.67 16 27 H 0.37 7.96 4.71 -40.82 -0.19 7.76 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.19 2.72 7.50 -52.49 -0.39 2.32 16 30 H 0.15 1.59 7.89 -52.49 -0.41 1.17 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 33 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 291.60 15.07 4.39 4.39 Total: -1.00 -34.10 291.60 -6.09 -40.19 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -2.89 Total: 10.18 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -3.92 Total: 2.01 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.96 Total: -55.70 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.08 Total: -15.64 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.10 -6.09 -40.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604537779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.177 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds