Wall clock time and date at job start Mon Mar 30 2020 01:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38069 * 126.31956 * 2 1 4 4 C 1.47349 * 126.41730 * 359.97438 * 3 2 1 5 5 O 1.21630 * 119.99560 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00158 * 179.97438 * 4 3 2 7 7 C 1.36971 * 119.99978 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99929 * 359.97438 * 7 6 4 9 9 C 1.38984 * 120.00038 * 179.97438 * 7 6 4 10 10 N 1.31411 * 119.99972 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 119.99932 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47134 * 89.99981 * 11 9 7 13 13 H 1.48506 * 109.47216 * 209.99886 * 11 9 7 14 14 H 1.48507 * 109.47314 * 329.99964 * 11 9 7 15 15 C 1.41405 * 107.17143 * 179.97438 * 3 2 1 16 16 N 1.30438 * 108.08159 * 0.02562 * 15 3 2 17 17 N 1.34645 * 126.31945 * 180.02562 * 2 1 3 18 18 C 1.39804 * 125.77631 * 0.02791 * 17 2 1 19 19 C 1.38947 * 119.68587 * 154.72974 * 18 17 2 20 20 C 1.38423 * 119.10549 * 179.79855 * 19 18 17 21 21 C 1.38797 * 118.48209 * 0.47334 * 20 19 18 22 22 C 1.38129 * 119.29369 * 359.74672 * 21 20 19 23 23 N 1.31892 * 120.84230 * 0.02767 * 22 21 20 24 24 H 1.08999 * 109.47096 * 89.97404 * 1 2 3 25 25 H 1.08999 * 109.47183 * 209.97148 * 1 2 3 26 26 H 1.08997 * 109.47207 * 329.97432 * 1 2 3 27 27 H 0.97005 * 119.99897 * 359.97438 * 6 4 3 28 28 H 0.97000 * 119.99794 * 180.02562 * 10 9 7 29 29 H 1.07998 * 125.95845 * 179.74113 * 15 3 2 30 30 H 1.07998 * 120.44922 * 0.02562 * 19 18 17 31 31 H 1.07996 * 120.76417 * 180.24131 * 20 19 18 32 32 H 1.07994 * 120.35527 * 179.72895 * 21 20 19 33 33 H 1.08000 * 119.58252 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3248 1.1125 0.0000 4 6 1.8876 2.5196 -0.0005 5 8 0.7012 2.7876 -0.0015 6 7 2.8022 3.5095 0.0001 7 6 2.3956 4.8175 0.0001 8 1 1.3422 5.0556 -0.0008 9 6 3.3388 5.8383 0.0012 10 7 2.9488 7.0932 0.0008 11 14 5.1608 5.4265 0.0035 12 1 5.6453 5.3174 -1.3960 13 1 5.9101 6.5001 0.7044 14 1 5.3755 4.1347 0.7038 15 6 3.6607 0.6486 0.0006 16 7 3.6364 -0.6555 0.0004 17 7 2.3046 -1.0849 -0.0005 18 6 1.8748 -2.4152 -0.0016 19 6 2.7021 -3.4052 -0.5173 20 6 2.2663 -4.7190 -0.5086 21 6 1.0085 -4.9957 0.0089 22 6 0.2374 -3.9606 0.5008 23 7 0.6818 -2.7189 0.4832 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5142 27 1 3.7483 3.2956 0.0012 28 1 3.6070 7.8057 0.0012 29 1 4.5465 1.2664 -0.0032 30 1 3.6737 -3.1536 -0.9162 31 1 2.8891 -5.5102 -0.8991 32 1 0.6365 -6.0094 0.0265 33 1 -0.7422 -4.1705 0.9042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604537779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:17 Heat of formation + Delta-G solvation = 69.224679 kcal Electronic energy + Delta-G solvation = -19730.693683 eV Core-core repulsion = 16564.878424 eV Total energy + Delta-G solvation = -3165.815259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.89401 -40.99443 -39.80076 -36.08932 -34.96268 -33.76601 -33.63886 -32.98029 -30.69330 -28.72708 -26.81640 -24.93915 -24.85960 -23.12350 -21.84482 -21.11595 -19.97006 -18.92459 -17.60605 -17.39611 -16.96682 -16.85923 -16.55802 -15.75244 -15.54058 -15.29176 -15.24797 -14.72231 -14.63680 -14.29397 -14.21019 -13.88177 -13.74162 -13.28434 -12.98533 -12.83594 -12.42334 -12.14734 -11.95941 -11.56929 -11.46238 -10.98812 -10.66675 -10.44327 -10.27373 -10.02526 -9.46191 -8.41525 -5.99587 -0.44661 0.18580 0.69525 0.96389 1.07107 1.32001 1.41133 1.45693 2.24009 2.44667 2.66611 2.90052 3.24592 3.27112 3.40168 3.64013 3.91753 3.96306 4.02612 4.11461 4.22125 4.37078 4.50845 4.61267 4.69954 4.96865 5.01260 5.09523 5.14724 5.26038 5.48872 5.56550 5.94118 5.96332 6.20719 6.58226 6.82039 6.85393 7.37371 7.92292 8.75483 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039819 B = 0.004232 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.018608 B = 6614.653095 C = 7261.243319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.161 3.839 3 C -0.290 4.290 4 C 0.528 3.472 5 O -0.619 6.619 6 N -0.576 5.576 7 C -0.326 4.326 8 H 0.062 0.938 9 C -0.011 4.011 10 N -0.928 5.928 11 Si 0.956 3.044 12 H -0.253 1.253 13 H -0.272 1.272 14 H -0.230 1.230 15 C 0.095 3.905 16 N -0.294 5.294 17 N -0.321 5.321 18 C 0.324 3.676 19 C -0.166 4.166 20 C -0.048 4.048 21 C -0.162 4.162 22 C 0.119 3.881 23 N -0.526 5.526 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.079 0.921 27 H 0.388 0.612 28 H 0.281 0.719 29 H 0.224 0.776 30 H 0.144 0.856 31 H 0.181 0.819 32 H 0.185 0.815 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 -28.383 -0.860 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.033 3.967 3 C -0.304 4.304 4 C 0.317 3.683 5 O -0.505 6.505 6 N -0.216 5.216 7 C -0.455 4.455 8 H 0.080 0.920 9 C -0.211 4.211 10 N -0.569 5.569 11 Si 0.776 3.224 12 H -0.178 1.178 13 H -0.196 1.196 14 H -0.153 1.153 15 C -0.094 4.094 16 N -0.112 5.112 17 N -0.097 5.097 18 C 0.101 3.899 19 C -0.188 4.188 20 C -0.074 4.074 21 C -0.182 4.182 22 C -0.039 4.039 23 N -0.239 5.239 24 H 0.100 0.900 25 H 0.131 0.869 26 H 0.098 0.902 27 H 0.224 0.776 28 H 0.090 0.910 29 H 0.240 0.760 30 H 0.162 0.838 31 H 0.198 0.802 32 H 0.202 0.798 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.180 -28.437 -0.534 28.525 hybrid contribution 0.889 1.103 -0.259 1.440 sum 3.069 -27.334 -0.793 27.517 Atomic orbital electron populations 1.20792 0.85096 1.05431 1.03932 1.21883 0.95996 0.85386 0.93482 1.20187 0.94060 0.93146 1.23023 1.17179 0.85444 0.83980 0.81663 1.90572 1.18169 1.84581 1.57217 1.41715 1.07854 1.04999 1.66982 1.19039 0.94953 0.81308 1.50202 0.92032 1.26080 1.04953 0.94098 0.95921 1.69787 1.37271 1.00128 1.49669 0.85485 0.76403 0.80282 0.80259 1.17764 1.19642 1.15348 1.24627 0.97700 0.91767 0.95301 1.77103 0.94357 1.13148 1.26549 1.45517 1.04626 1.03554 1.56012 1.18077 0.92353 0.81299 0.98219 1.21859 1.01629 0.93456 1.01900 1.22013 0.96287 0.95035 0.94096 1.22685 0.94505 1.02652 0.98355 1.23302 1.01051 0.85090 0.94440 1.66909 1.13871 1.25410 1.17741 0.90047 0.86877 0.90184 0.77611 0.90972 0.75981 0.83835 0.80182 0.79775 0.78650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.28 9.42 71.24 0.67 -2.61 16 2 C 0.16 6.07 6.95 42.09 0.29 6.36 16 3 C -0.29 -11.86 6.13 -20.14 -0.12 -11.99 16 4 C 0.53 26.69 7.76 86.64 0.67 27.36 16 5 O -0.62 -36.02 14.42 -4.13 -0.06 -36.08 16 6 N -0.58 -28.99 5.08 -310.03 -1.57 -30.56 16 7 C -0.33 -19.54 10.16 84.07 0.85 -18.69 16 8 H 0.06 4.33 7.38 -2.91 -0.02 4.31 16 9 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 10 N -0.93 -56.21 13.96 21.67 0.30 -55.91 16 11 Si 0.96 39.12 27.74 68.60 1.90 41.02 16 12 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 13 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 14 H -0.23 -7.96 6.52 99.48 0.65 -7.32 16 15 C 0.09 3.15 11.50 85.68 0.99 4.14 16 16 N -0.29 -9.58 12.00 -56.20 -0.67 -10.25 16 17 N -0.32 -10.66 3.73 -179.23 -0.67 -11.33 16 18 C 0.32 8.75 7.34 132.77 0.97 9.72 16 19 C -0.17 -3.29 9.73 22.48 0.22 -3.07 16 20 C -0.05 -0.53 10.17 22.45 0.23 -0.30 16 21 C -0.16 -1.39 10.11 22.38 0.23 -1.16 16 22 C 0.12 1.66 11.18 84.66 0.95 2.61 16 23 N -0.53 -12.62 7.58 -192.80 -1.46 -14.08 16 24 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.11 3.40 5.80 -2.39 -0.01 3.39 16 26 H 0.08 3.21 6.51 -2.39 -0.02 3.20 16 27 H 0.39 16.29 4.71 -92.70 -0.44 15.86 16 28 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.22 5.66 7.50 -2.91 -0.02 5.63 16 30 H 0.14 2.82 7.89 -2.91 -0.02 2.80 16 31 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 32 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 33 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -81.95 291.60 4.85 -77.10 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.67 Total: 27.88 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 6.41 Total: 12.21 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -4.08 Total: -122.13 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.06 Total: -36.08 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.90 Total: 41.02 kcal Total: -81.95 4.85 -77.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604537779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.326 kcal (2) G-P(sol) polarization free energy of solvation -81.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds