Wall clock time and date at job start Mon Mar 30 2020 00:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86807 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47015 * 300.00583 * 3 2 1 6 6 H 1.48503 * 109.46665 * 60.00279 * 3 2 1 7 7 C 1.40122 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.41803 * 119.99906 * 359.97438 * 7 2 1 10 10 O 1.21781 * 120.00224 * 359.97438 * 9 7 2 11 11 N 1.34786 * 120.00040 * 180.02562 * 9 7 2 12 12 C 1.40162 * 119.99848 * 179.97438 * 11 9 7 13 13 C 1.40412 * 126.14658 * 0.02697 * 12 11 9 14 14 N 1.30794 * 108.20299 * 179.97438 * 13 12 11 15 15 N 1.40040 * 108.43279 * 0.02562 * 14 13 12 16 16 C 1.46501 * 125.97451 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46754 * 304.97451 * 16 15 14 18 18 C 1.38230 * 119.61355 * 125.00096 * 17 16 15 19 19 C 1.38627 * 119.15912 * 179.97438 * 18 17 16 20 20 C 1.38679 * 118.41953 * 0.02562 * 19 18 17 21 21 C 1.38180 * 119.16257 * 359.97438 * 20 19 18 22 22 N 1.31848 * 119.61978 * 304.72013 * 17 16 15 23 23 C 1.35172 * 108.04962 * 0.02562 * 15 14 13 24 24 H 0.97005 * 119.99834 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99829 * 359.97438 * 11 9 7 26 26 H 1.07989 * 125.89793 * 0.23617 * 13 12 11 27 27 H 1.09002 * 109.46720 * 64.97257 * 16 15 14 28 28 H 1.09000 * 109.46909 * 184.97197 * 16 15 14 29 29 H 1.08001 * 120.42172 * 359.95558 * 18 17 16 30 30 H 1.07997 * 120.79336 * 180.02562 * 19 18 17 31 31 H 1.08000 * 120.41473 * 180.02562 * 20 19 18 32 32 H 1.07996 * 119.61614 * 180.02562 * 21 20 19 33 33 H 1.08009 * 126.19831 * 180.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 -0.0006 5 1 1.8814 2.3966 -1.2125 6 1 1.8815 2.3964 1.2126 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2980 -2.4415 -0.0005 10 8 0.0802 -2.4416 0.0004 11 7 1.9719 -3.6088 -0.0005 12 6 1.2711 -4.8226 0.0000 13 6 -0.1250 -4.9729 0.0000 14 7 -0.3982 -6.2520 0.0001 15 7 0.8086 -6.9626 0.0006 16 6 0.9486 -8.4209 0.0003 17 6 0.1851 -8.9990 1.1639 18 6 -0.7702 -9.9723 0.9383 19 6 -1.4665 -10.4979 2.0156 20 6 -1.1750 -10.0225 3.2853 21 6 -0.2067 -9.0479 3.4335 22 7 0.4400 -8.5746 2.3860 23 6 1.8216 -6.0676 0.0015 24 1 -0.4850 0.8401 0.0004 25 1 2.9419 -3.6088 -0.0009 26 1 -0.8482 -4.1710 -0.0039 27 1 0.5511 -8.8238 -0.9313 28 1 2.0024 -8.6847 0.0900 29 1 -0.9718 -10.3186 -0.0647 30 1 -2.2181 -11.2596 1.8696 31 1 -1.6977 -10.4097 4.1474 32 1 0.0265 -8.6727 4.4189 33 1 2.8767 -6.2985 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613921937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:33 Heat of formation + Delta-G solvation = 85.673857 kcal Electronic energy + Delta-G solvation = -19386.534975 eV Core-core repulsion = 16221.433006 eV Total energy + Delta-G solvation = -3165.101969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63428 -39.96592 -37.33112 -34.10900 -33.00022 -32.47095 -32.20647 -30.62930 -28.52521 -26.88602 -25.52356 -23.63896 -22.44751 -21.12726 -20.39507 -19.22134 -17.16086 -17.01626 -16.66382 -16.10664 -15.65286 -15.36546 -14.86835 -14.47998 -14.10558 -13.81216 -13.47082 -13.14498 -12.96793 -12.68011 -12.40581 -12.13828 -11.87220 -11.79663 -11.22238 -11.09571 -10.53924 -10.24272 -10.03061 -9.99058 -9.55625 -9.40746 -9.16490 -8.82273 -8.61795 -7.59158 -6.51437 -6.27556 -4.77562 0.92205 1.16808 2.56064 3.04631 3.09700 3.18524 3.23070 3.72587 3.76133 4.05940 4.12577 4.54186 4.58404 4.69627 4.83413 4.92870 4.99845 5.15133 5.26218 5.42584 5.49027 5.57005 5.88578 5.88848 6.00487 6.06238 6.44438 6.54078 6.57518 7.31454 7.42399 7.63646 7.92090 7.97863 8.15817 8.39687 8.51854 8.91036 9.49199 10.49920 10.73354 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042270 B = 0.003482 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.253947 B = 8038.295637 C = 8183.714464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.089 3.911 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.552 3.448 10 O -0.573 6.573 11 N -0.679 5.679 12 C 0.057 3.943 13 C 0.051 3.949 14 N -0.299 5.299 15 N -0.376 5.376 16 C 0.201 3.799 17 C 0.119 3.881 18 C -0.156 4.156 19 C -0.077 4.077 20 C -0.174 4.174 21 C 0.102 3.898 22 N -0.462 5.462 23 C -0.035 4.035 24 H 0.270 0.730 25 H 0.389 0.611 26 H 0.208 0.792 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.155 0.845 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.022 -18.701 2.640 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.457 6.457 11 N -0.324 5.324 12 C -0.050 4.050 13 C -0.137 4.137 14 N -0.122 5.122 15 N -0.164 5.164 16 C 0.078 3.922 17 C -0.020 4.020 18 C -0.177 4.177 19 C -0.103 4.103 20 C -0.194 4.194 21 C -0.055 4.055 22 N -0.171 5.171 23 C -0.181 4.181 24 H 0.081 0.919 25 H 0.221 0.779 26 H 0.224 0.776 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.752 -18.837 2.746 19.051 hybrid contribution 1.005 0.722 0.026 1.237 sum 1.757 -18.116 2.772 18.411 Atomic orbital electron populations 1.70026 1.07217 1.27535 1.32975 1.25735 0.94611 1.00555 0.92453 0.86266 0.80543 0.81366 0.78315 1.18636 1.20041 1.20034 1.20036 0.94277 0.90011 1.53245 0.91255 1.16972 0.87407 0.81962 0.77652 1.90493 1.13824 1.85896 1.55485 1.43455 1.08445 1.03072 1.77387 1.18044 0.92213 0.86616 1.08130 1.24740 0.95972 0.93237 0.99776 1.77185 1.04836 1.05397 1.24735 1.47472 1.03993 1.03952 1.60957 1.20217 1.00732 0.76531 0.94767 1.21325 0.94813 0.93041 0.92857 1.21915 0.96974 0.98434 1.00361 1.21543 0.97860 0.98388 0.92504 1.22160 0.99759 0.99224 0.98288 1.22773 0.92151 0.92948 0.97664 1.67453 1.26241 1.24573 0.98860 1.21484 0.93896 0.88553 1.14193 0.91861 0.77875 0.77630 0.88922 0.87627 0.84651 0.84805 0.84855 0.82789 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.91 11.73 55.55 0.65 -21.26 16 2 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 3 Si 0.91 19.65 29.56 -169.99 -5.02 14.62 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.54 -14.96 9.31 -37.51 -0.35 -15.31 16 8 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 9 C 0.55 15.67 7.54 -14.89 -0.11 15.56 16 10 O -0.57 -18.06 12.02 5.12 0.06 -18.00 16 11 N -0.68 -15.96 5.44 -12.61 -0.07 -16.03 16 12 C 0.06 1.28 6.90 -83.99 -0.58 0.70 16 13 C 0.05 1.21 10.84 -17.18 -0.19 1.02 16 14 N -0.30 -6.41 12.38 30.73 0.38 -6.03 16 15 N -0.38 -6.65 3.63 -62.27 -0.23 -6.88 16 16 C 0.20 2.53 6.89 -5.19 -0.04 2.49 16 17 C 0.12 1.57 6.24 -82.59 -0.52 1.06 16 18 C -0.16 -1.66 9.71 -39.44 -0.38 -2.04 16 19 C -0.08 -0.72 10.18 -39.27 -0.40 -1.12 16 20 C -0.17 -1.69 10.11 -39.44 -0.40 -2.09 16 21 C 0.10 1.24 11.18 -17.55 -0.20 1.04 16 22 N -0.46 -6.92 10.22 -9.47 -0.10 -7.02 16 23 C -0.04 -0.64 11.50 -16.84 -0.19 -0.84 16 24 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 25 H 0.39 7.79 8.78 -40.82 -0.36 7.43 16 26 H 0.21 5.46 5.91 -52.49 -0.31 5.15 16 27 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 28 H 0.11 1.04 8.07 -51.93 -0.42 0.62 16 29 H 0.14 1.08 7.95 -52.49 -0.42 0.67 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.16 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 299.16 15.07 4.51 4.51 Total: -1.00 -36.38 299.16 -6.41 -42.79 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -3.15 Total: 10.49 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -3.45 Total: 2.80 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.64 Total: -57.21 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.06 Total: -18.00 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.38 -6.41 -42.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613921937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.468 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds