Wall clock time and date at job start Mon Mar 30 2020 00:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86807 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47015 * 300.00583 * 3 2 1 6 6 H 1.48503 * 109.46665 * 60.00279 * 3 2 1 7 7 C 1.40122 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.41803 * 119.99906 * 359.97438 * 7 2 1 10 10 O 1.21781 * 120.00224 * 359.97438 * 9 7 2 11 11 N 1.34786 * 120.00040 * 180.02562 * 9 7 2 12 12 C 1.40162 * 119.99848 * 179.97438 * 11 9 7 13 13 C 1.40412 * 126.14658 * 0.02697 * 12 11 9 14 14 N 1.30794 * 108.20299 * 179.97438 * 13 12 11 15 15 N 1.40040 * 108.43279 * 0.02562 * 14 13 12 16 16 C 1.46501 * 125.97451 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46754 * 304.97451 * 16 15 14 18 18 C 1.38230 * 119.61355 * 125.00096 * 17 16 15 19 19 C 1.38627 * 119.15912 * 179.97438 * 18 17 16 20 20 C 1.38679 * 118.41953 * 0.02562 * 19 18 17 21 21 C 1.38180 * 119.16257 * 359.97438 * 20 19 18 22 22 N 1.31848 * 119.61978 * 304.72013 * 17 16 15 23 23 C 1.35172 * 108.04962 * 0.02562 * 15 14 13 24 24 H 0.97005 * 119.99834 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99829 * 359.97438 * 11 9 7 26 26 H 1.07989 * 125.89793 * 0.23617 * 13 12 11 27 27 H 1.09002 * 109.46720 * 64.97257 * 16 15 14 28 28 H 1.09000 * 109.46909 * 184.97197 * 16 15 14 29 29 H 1.08001 * 120.42172 * 359.95558 * 18 17 16 30 30 H 1.07997 * 120.79336 * 180.02562 * 19 18 17 31 31 H 1.08000 * 120.41473 * 180.02562 * 20 19 18 32 32 H 1.07996 * 119.61614 * 180.02562 * 21 20 19 33 33 H 1.08009 * 126.19831 * 180.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 -0.0006 5 1 1.8814 2.3966 -1.2125 6 1 1.8815 2.3964 1.2126 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2980 -2.4415 -0.0005 10 8 0.0802 -2.4416 0.0004 11 7 1.9719 -3.6088 -0.0005 12 6 1.2711 -4.8226 0.0000 13 6 -0.1250 -4.9729 0.0000 14 7 -0.3982 -6.2520 0.0001 15 7 0.8086 -6.9626 0.0006 16 6 0.9486 -8.4209 0.0003 17 6 0.1851 -8.9990 1.1639 18 6 -0.7702 -9.9723 0.9383 19 6 -1.4665 -10.4979 2.0156 20 6 -1.1750 -10.0225 3.2853 21 6 -0.2067 -9.0479 3.4335 22 7 0.4400 -8.5746 2.3860 23 6 1.8216 -6.0676 0.0015 24 1 -0.4850 0.8401 0.0004 25 1 2.9419 -3.6088 -0.0009 26 1 -0.8482 -4.1710 -0.0039 27 1 0.5511 -8.8238 -0.9313 28 1 2.0024 -8.6847 0.0900 29 1 -0.9718 -10.3186 -0.0647 30 1 -2.2181 -11.2596 1.8696 31 1 -1.6977 -10.4097 4.1474 32 1 0.0265 -8.6727 4.4189 33 1 2.8767 -6.2985 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613921937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:33 Heat of formation + Delta-G solvation = 58.288376 kcal Electronic energy + Delta-G solvation = -19387.722499 eV Core-core repulsion = 16221.433006 eV Total energy + Delta-G solvation = -3166.289492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.07864 -40.98520 -39.32963 -35.57299 -34.66868 -34.21648 -33.31143 -31.86129 -30.22542 -28.55426 -27.03079 -24.47334 -23.51583 -23.00761 -21.85274 -20.96736 -19.06320 -18.22947 -17.79952 -17.41561 -17.02312 -16.57336 -16.39085 -15.91960 -15.73267 -15.00335 -14.75930 -14.56700 -14.45413 -14.10661 -13.81803 -13.58116 -13.33722 -13.08046 -12.80631 -12.63984 -12.61449 -11.94686 -11.62655 -11.28518 -10.86647 -10.82066 -10.43691 -10.17828 -9.97783 -9.75281 -8.31644 -8.28274 -6.90502 0.07686 0.36904 1.01075 1.41473 1.42567 1.60980 1.74733 1.95632 2.25970 2.57670 2.84221 3.14274 3.31306 3.73121 3.77865 3.95776 4.04371 4.11109 4.21202 4.24549 4.40120 4.48070 4.65076 4.80505 4.86155 4.88436 5.18147 5.24478 5.28323 5.59277 5.76408 5.95829 6.18194 6.28578 6.54724 6.81341 6.85073 7.04618 7.58502 8.48948 8.67432 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042270 B = 0.003482 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.253947 B = 8038.295637 C = 8183.714464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.031 3.969 3 Si 1.002 2.998 4 H -0.245 1.245 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.566 4.566 8 H 0.091 0.909 9 C 0.533 3.467 10 O -0.618 6.618 11 N -0.671 5.671 12 C 0.008 3.992 13 C 0.015 3.985 14 N -0.311 5.311 15 N -0.356 5.356 16 C 0.186 3.814 17 C 0.089 3.911 18 C -0.157 4.157 19 C -0.078 4.078 20 C -0.168 4.168 21 C 0.075 3.925 22 N -0.506 5.506 23 C 0.008 3.992 24 H 0.277 0.723 25 H 0.405 0.595 26 H 0.166 0.834 27 H 0.123 0.877 28 H 0.139 0.861 29 H 0.162 0.838 30 H 0.169 0.831 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 -20.711 2.571 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.187 4.187 3 Si 0.821 3.179 4 H -0.168 1.168 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.601 4.601 8 H 0.109 0.891 9 C 0.342 3.658 10 O -0.506 6.506 11 N -0.316 5.316 12 C -0.098 4.098 13 C -0.171 4.171 14 N -0.135 5.135 15 N -0.142 5.142 16 C 0.066 3.934 17 C -0.049 4.049 18 C -0.177 4.177 19 C -0.104 4.104 20 C -0.187 4.187 21 C -0.082 4.082 22 N -0.216 5.216 23 C -0.141 4.141 24 H 0.087 0.913 25 H 0.240 0.760 26 H 0.183 0.817 27 H 0.141 0.859 28 H 0.157 0.843 29 H 0.180 0.820 30 H 0.186 0.814 31 H 0.181 0.819 32 H 0.180 0.820 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.595 -20.931 2.678 21.260 hybrid contribution 0.407 1.021 0.090 1.103 sum 3.003 -19.910 2.768 20.325 Atomic orbital electron populations 1.70192 1.09706 1.29184 1.34269 1.27025 0.95489 1.05154 0.91029 0.84910 0.79436 0.75021 0.78524 1.16754 1.19283 1.19381 1.20564 0.95459 0.90505 1.53603 0.89113 1.17396 0.87198 0.83716 0.77538 1.90478 1.15726 1.86998 1.57391 1.42941 1.09023 1.02533 1.77153 1.18270 0.91838 0.87656 1.12045 1.24176 0.96496 0.93547 1.02871 1.77093 1.06658 1.04456 1.25340 1.48032 1.02757 1.06050 1.57383 1.20868 1.03318 0.73006 0.96248 1.21463 0.96354 0.94631 0.92464 1.22264 0.95798 0.97503 1.02160 1.22030 0.97934 0.98556 0.91899 1.22514 0.98570 0.97848 0.99810 1.23096 0.93264 0.94152 0.97656 1.67357 1.27972 1.26192 1.00062 1.22149 0.95899 0.86813 1.09220 0.91302 0.75986 0.81698 0.85919 0.84327 0.82032 0.81372 0.81871 0.81976 0.77090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -49.07 11.73 21.85 0.26 -48.81 16 2 C 0.03 1.69 5.50 85.33 0.47 2.16 16 3 Si 1.00 40.46 29.56 68.60 2.03 42.49 16 4 H -0.24 -9.07 7.11 99.48 0.71 -8.36 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 7 C -0.57 -32.01 9.31 23.61 0.22 -31.79 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.53 31.68 7.54 85.12 0.64 32.32 16 10 O -0.62 -41.74 12.02 -4.61 -0.06 -41.80 16 11 N -0.67 -32.28 5.44 -311.97 -1.70 -33.98 16 12 C 0.01 0.36 6.90 37.85 0.26 0.62 16 13 C 0.01 0.75 10.84 85.38 0.93 1.68 16 14 N -0.31 -13.58 12.38 -56.69 -0.70 -14.28 16 15 N -0.36 -12.00 3.63 -350.92 -1.27 -13.27 16 16 C 0.19 4.10 6.89 85.63 0.59 4.69 16 17 C 0.09 2.18 6.24 42.56 0.27 2.45 16 18 C -0.16 -2.88 9.71 22.36 0.22 -2.66 16 19 C -0.08 -1.21 10.18 22.47 0.23 -0.99 16 20 C -0.17 -2.86 10.11 22.36 0.23 -2.63 16 21 C 0.08 1.76 11.18 84.67 0.95 2.71 16 22 N -0.51 -14.66 10.22 -183.89 -1.88 -16.54 16 23 C 0.01 0.26 11.50 83.69 0.96 1.22 16 24 H 0.28 15.18 8.29 -92.70 -0.77 14.41 16 25 H 0.41 16.13 8.78 -92.71 -0.81 15.31 16 26 H 0.17 9.71 5.91 -2.92 -0.02 9.69 16 27 H 0.12 2.01 7.87 -2.39 -0.02 1.99 16 28 H 0.14 2.13 8.07 -2.39 -0.02 2.11 16 29 H 0.16 1.97 7.95 -2.91 -0.02 1.94 16 30 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 31 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 33 H 0.21 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -86.06 299.16 2.97 -83.09 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.34 Total: 33.31 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.95 Total: 9.78 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -5.30 Total: -126.87 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.06 Total: -41.80 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -86.06 2.97 -83.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613921937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.376 kcal (2) G-P(sol) polarization free energy of solvation -86.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds