Wall clock time and date at job start Mon Mar 30 2020 00:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99808 * 2 1 4 4 H 1.48500 * 109.47370 * 270.00260 * 3 2 1 5 5 H 1.48505 * 109.47159 * 29.99947 * 3 2 1 6 6 H 1.48500 * 109.47096 * 149.99867 * 3 2 1 7 7 C 1.37867 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00371 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47251 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47017 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46798 * 305.00111 * 11 10 9 13 13 N 1.46893 * 109.47394 * 65.00003 * 11 10 9 14 14 C 1.50699 * 109.47279 * 185.00377 * 11 10 9 15 15 O 1.21285 * 119.99928 * 260.00189 * 14 11 10 16 16 N 1.34774 * 120.00247 * 79.99494 * 14 11 10 17 17 C 1.47335 * 121.37211 * 180.02562 * 16 14 11 18 18 C 1.53099 * 107.89163 * 118.14748 * 17 16 14 19 19 C 1.49974 * 110.25227 * 45.57654 * 18 17 16 20 20 C 1.29375 * 124.77622 * 340.69699 * 19 18 17 21 21 Cl 1.73600 * 118.26131 * 181.03974 * 20 19 18 22 22 C 1.47004 * 121.36880 * 359.97438 * 16 14 11 23 23 H 0.96995 * 119.99770 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46608 * 59.99925 * 9 7 2 25 25 H 1.09002 * 109.46700 * 300.00235 * 9 7 2 26 26 H 1.08999 * 109.47201 * 60.00502 * 10 9 7 27 27 H 1.09002 * 109.47636 * 299.99876 * 10 9 7 28 28 H 1.00905 * 111.00212 * 296.04913 * 13 11 10 29 29 H 1.00903 * 111.00369 * 59.99945 * 13 11 10 30 30 H 1.08999 * 109.77638 * 358.55059 * 17 16 14 31 31 H 1.09001 * 109.77823 * 237.74533 * 17 16 14 32 32 H 1.09002 * 109.31673 * 165.77207 * 18 17 16 33 33 H 1.08998 * 109.31098 * 285.38961 * 18 17 16 34 34 H 1.08000 * 117.70787 * 160.90776 * 19 18 17 35 35 H 1.08997 * 109.52386 * 342.90129 * 22 16 14 36 36 H 1.09004 * 109.52594 * 103.03203 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0025 12 1 0.7887 -5.0075 0.8396 13 7 0.7283 -5.1176 -1.2574 14 6 2.4552 -6.1298 0.1202 15 8 2.7867 -6.7526 -0.8663 16 7 2.9586 -6.4597 1.3261 17 6 3.9138 -7.5708 1.4806 18 6 5.2243 -6.9928 2.0211 19 6 4.9471 -6.0431 3.1482 20 6 3.8046 -5.4798 3.3744 21 17 3.6794 -4.3842 4.7152 22 6 2.5782 -5.7249 2.5411 23 1 -0.4849 0.8400 0.0004 24 1 0.6242 -2.5566 -0.8903 25 1 0.6249 -2.5570 0.8897 26 1 2.8727 -3.6046 0.8877 27 1 2.8715 -3.6039 -0.8923 28 1 0.0234 -4.3995 -1.3329 29 1 1.3477 -5.1013 -2.0537 30 1 4.0898 -8.0430 0.5141 31 1 3.5165 -8.3037 2.1829 32 1 5.8554 -7.8053 2.3812 33 1 5.7411 -6.4621 1.2215 34 1 5.7604 -5.8088 3.8191 35 1 2.1293 -4.7710 2.2644 36 1 1.8605 -6.3132 3.1129 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691560725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:33 Heat of formation + Delta-G solvation = -36.561946 kcal Electronic energy + Delta-G solvation = -19174.421016 eV Core-core repulsion = 16105.125999 eV Total energy + Delta-G solvation = -3069.295017 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29600 -37.82736 -36.34179 -35.56939 -33.05479 -32.80022 -31.12262 -29.91379 -27.04214 -25.76266 -24.26012 -22.97326 -20.65671 -19.88635 -17.85529 -17.65571 -16.44317 -16.07453 -15.85817 -15.17443 -14.56324 -14.41430 -14.28831 -14.24126 -13.79923 -13.29360 -13.05818 -12.87638 -12.37547 -12.22052 -11.97996 -11.70554 -11.62825 -11.15071 -11.07906 -11.00023 -10.92876 -10.68780 -10.00713 -9.93835 -9.30984 -9.22858 -9.04975 -8.76865 -8.44209 -8.22645 -6.08764 -4.11706 1.71227 2.01936 2.80939 2.97065 3.27296 3.34055 3.37342 4.34426 4.39278 4.64310 4.74638 4.94605 5.08832 5.12914 5.17170 5.25797 5.27688 5.44195 5.51817 5.69361 5.70508 5.72262 5.95209 6.22977 6.27941 6.34029 6.49744 6.83944 7.27943 7.49315 7.53621 7.60906 7.86936 7.88553 8.29069 8.31848 8.93871 9.53343 11.02161 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.005938 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.241395 B = 4714.459165 C = 5910.483819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.139 4.139 11 C 0.073 3.927 12 H 0.097 0.903 13 N -0.830 5.830 14 C 0.535 3.465 15 O -0.533 6.533 16 N -0.617 5.617 17 C 0.107 3.893 18 C -0.099 4.099 19 C -0.137 4.137 20 C -0.080 4.080 21 Cl -0.077 7.077 22 C 0.143 3.857 23 H 0.262 0.738 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.355 0.645 29 H 0.346 0.654 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 -13.582 7.642 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.179 4.179 11 C -0.042 4.042 12 H 0.115 0.885 13 N -0.362 5.362 14 C 0.324 3.676 15 O -0.408 6.408 16 N -0.353 5.353 17 C -0.016 4.016 18 C -0.137 4.137 19 C -0.156 4.156 20 C -0.107 4.107 21 Cl -0.049 7.049 22 C 0.020 3.980 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.171 0.829 29 H 0.159 0.841 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.982 -14.415 7.472 17.674 hybrid contribution 0.953 2.169 0.174 2.375 sum 7.935 -12.246 7.646 16.474 Atomic orbital electron populations 1.69946 1.05992 1.26780 1.50454 1.24991 0.94850 0.99246 0.95104 0.86606 0.79898 0.83433 0.78174 1.20617 1.21125 1.19869 1.21154 0.93000 0.90832 1.51102 0.92748 1.19098 0.93638 0.91043 0.97396 1.22435 0.99975 0.93880 1.01611 1.21527 0.94679 0.92287 0.95710 0.88497 1.58756 1.18427 1.55937 1.03100 1.20888 0.80890 0.84280 0.81506 1.90630 1.60483 1.53531 1.36149 1.48132 1.46483 1.33613 1.07023 1.21675 0.88101 0.88866 1.02912 1.20809 0.98313 0.98210 0.96350 1.22011 0.96469 0.98085 0.99047 1.22464 0.97837 0.97075 0.93367 1.98399 1.98490 1.62815 1.45147 1.20646 0.93279 0.99133 0.84980 0.92878 0.96359 0.96278 0.92424 0.92578 0.82929 0.84113 0.88261 0.90922 0.89239 0.89569 0.86338 0.86735 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 10 C -0.14 -2.73 4.45 -26.73 -0.12 -2.85 16 11 C 0.07 1.24 2.35 -68.87 -0.16 1.08 16 12 H 0.10 1.56 7.06 -51.93 -0.37 1.19 16 13 N -0.83 -14.22 8.94 -5.66 -0.05 -14.27 16 14 C 0.54 8.90 6.97 -10.99 -0.08 8.83 16 15 O -0.53 -10.23 15.74 5.55 0.09 -10.14 16 16 N -0.62 -8.30 2.97 -174.16 -0.52 -8.81 16 17 C 0.11 1.16 6.50 -3.53 -0.02 1.13 16 18 C -0.10 -0.92 6.29 -28.18 -0.18 -1.09 16 19 C -0.14 -1.42 9.47 -35.93 -0.34 -1.76 16 20 C -0.08 -0.94 6.33 -35.78 -0.23 -1.17 16 21 Cl -0.08 -0.95 28.76 -51.86 -1.49 -2.44 16 22 C 0.14 1.75 5.84 -5.12 -0.03 1.72 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 1.11 6.78 -51.93 -0.35 0.76 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.36 6.07 7.55 -39.29 -0.30 5.77 16 29 H 0.35 5.99 8.58 -39.29 -0.34 5.65 16 30 H 0.10 1.17 7.07 -51.93 -0.37 0.80 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.12 1.10 7.94 -52.49 -0.42 0.68 16 35 H 0.11 1.58 4.88 -51.93 -0.25 1.32 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -30.72 309.69 -8.11 -38.83 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.82 Total: 7.69 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.70 Total: -6.66 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.17 Total: -48.25 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.49 Total: -2.44 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.72 -8.11 -38.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691560725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.270 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds