Wall clock time and date at job start Mon Mar 30 2020 00:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99808 * 2 1 4 4 H 1.48500 * 109.47370 * 270.00260 * 3 2 1 5 5 H 1.48505 * 109.47159 * 29.99947 * 3 2 1 6 6 H 1.48500 * 109.47096 * 149.99867 * 3 2 1 7 7 C 1.37867 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00371 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47251 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47017 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46798 * 305.00111 * 11 10 9 13 13 N 1.46893 * 109.47394 * 65.00003 * 11 10 9 14 14 C 1.50699 * 109.47279 * 185.00377 * 11 10 9 15 15 O 1.21285 * 119.99928 * 260.00189 * 14 11 10 16 16 N 1.34774 * 120.00247 * 79.99494 * 14 11 10 17 17 C 1.47335 * 121.37211 * 180.02562 * 16 14 11 18 18 C 1.53099 * 107.89163 * 118.14748 * 17 16 14 19 19 C 1.49974 * 110.25227 * 45.57654 * 18 17 16 20 20 C 1.29375 * 124.77622 * 340.69699 * 19 18 17 21 21 Cl 1.73600 * 118.26131 * 181.03974 * 20 19 18 22 22 C 1.47004 * 121.36880 * 359.97438 * 16 14 11 23 23 H 0.96995 * 119.99770 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46608 * 59.99925 * 9 7 2 25 25 H 1.09002 * 109.46700 * 300.00235 * 9 7 2 26 26 H 1.08999 * 109.47201 * 60.00502 * 10 9 7 27 27 H 1.09002 * 109.47636 * 299.99876 * 10 9 7 28 28 H 1.00905 * 111.00212 * 296.04913 * 13 11 10 29 29 H 1.00903 * 111.00369 * 59.99945 * 13 11 10 30 30 H 1.08999 * 109.77638 * 358.55059 * 17 16 14 31 31 H 1.09001 * 109.77823 * 237.74533 * 17 16 14 32 32 H 1.09002 * 109.31673 * 165.77207 * 18 17 16 33 33 H 1.08998 * 109.31098 * 285.38961 * 18 17 16 34 34 H 1.08000 * 117.70787 * 160.90776 * 19 18 17 35 35 H 1.08997 * 109.52386 * 342.90129 * 22 16 14 36 36 H 1.09004 * 109.52594 * 103.03203 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0025 12 1 0.7887 -5.0075 0.8396 13 7 0.7283 -5.1176 -1.2574 14 6 2.4552 -6.1298 0.1202 15 8 2.7867 -6.7526 -0.8663 16 7 2.9586 -6.4597 1.3261 17 6 3.9138 -7.5708 1.4806 18 6 5.2243 -6.9928 2.0211 19 6 4.9471 -6.0431 3.1482 20 6 3.8046 -5.4798 3.3744 21 17 3.6794 -4.3842 4.7152 22 6 2.5782 -5.7249 2.5411 23 1 -0.4849 0.8400 0.0004 24 1 0.6242 -2.5566 -0.8903 25 1 0.6249 -2.5570 0.8897 26 1 2.8727 -3.6046 0.8877 27 1 2.8715 -3.6039 -0.8923 28 1 0.0234 -4.3995 -1.3329 29 1 1.3477 -5.1013 -2.0537 30 1 4.0898 -8.0430 0.5141 31 1 3.5165 -8.3037 2.1829 32 1 5.8554 -7.8053 2.3812 33 1 5.7411 -6.4621 1.2215 34 1 5.7604 -5.8088 3.8191 35 1 2.1293 -4.7710 2.2644 36 1 1.8605 -6.3132 3.1129 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691560725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:32 Heat of formation + Delta-G solvation = -56.793697 kcal Electronic energy + Delta-G solvation = -19175.298330 eV Core-core repulsion = 16105.125999 eV Total energy + Delta-G solvation = -3070.172332 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.47942 -38.90343 -37.36286 -37.07691 -34.87937 -33.97840 -32.01828 -31.70931 -28.50122 -27.05627 -25.67641 -24.18581 -22.30587 -21.09667 -19.18486 -18.63597 -18.31228 -17.35200 -16.89413 -16.55097 -16.14334 -15.75292 -15.62395 -15.39018 -14.89405 -14.72230 -14.55197 -14.03251 -13.86340 -13.44879 -13.32441 -13.01876 -12.87612 -12.67542 -12.54315 -12.52804 -12.03640 -11.91113 -11.82470 -11.72326 -11.31204 -10.75926 -10.56107 -9.94277 -9.83014 -9.66926 -8.21675 -6.31562 0.85065 1.09937 1.38689 1.39177 1.49113 1.51508 1.90647 2.39330 3.12183 3.38992 3.49094 3.71027 3.94170 4.04745 4.08312 4.14323 4.21749 4.35020 4.38890 4.60476 4.67413 4.77515 4.85130 4.92742 5.05173 5.13059 5.36843 5.43241 5.46293 5.63628 5.79780 6.00479 6.20109 6.24586 6.45534 6.83013 7.04188 7.37403 8.89103 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.005938 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.241395 B = 4714.459165 C = 5910.483819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.120 4.120 11 C 0.079 3.921 12 H 0.107 0.893 13 N -0.828 5.828 14 C 0.535 3.465 15 O -0.563 6.563 16 N -0.610 5.610 17 C 0.101 3.899 18 C -0.094 4.094 19 C -0.123 4.123 20 C -0.099 4.099 21 Cl -0.086 7.086 22 C 0.142 3.858 23 H 0.264 0.736 24 H 0.004 0.996 25 H 0.003 0.997 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.354 0.646 29 H 0.344 0.656 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.611 -14.231 8.566 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.159 4.159 11 C -0.036 4.036 12 H 0.125 0.875 13 N -0.360 5.360 14 C 0.324 3.676 15 O -0.441 6.441 16 N -0.344 5.344 17 C -0.020 4.020 18 C -0.132 4.132 19 C -0.142 4.142 20 C -0.126 4.126 21 Cl -0.058 7.058 22 C 0.019 3.981 23 H 0.073 0.927 24 H 0.022 0.978 25 H 0.021 0.979 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.169 0.831 29 H 0.158 0.842 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.383 -15.078 8.429 19.201 hybrid contribution 0.539 2.323 -0.082 2.386 sum 8.922 -12.755 8.347 17.663 Atomic orbital electron populations 1.70052 1.07386 1.27734 1.51317 1.25807 0.95695 1.02772 0.94752 0.85603 0.78785 0.79231 0.78401 1.19993 1.20600 1.19161 1.21571 0.93219 0.92435 1.50867 0.92952 1.18946 0.93904 0.91804 0.95822 1.22144 0.98822 0.93828 1.01137 1.21444 0.94806 0.91389 0.96010 0.87495 1.58774 1.18331 1.55677 1.03192 1.20641 0.80833 0.83980 0.82189 1.90617 1.61560 1.54576 1.37325 1.48139 1.46078 1.33889 1.06336 1.21942 0.88370 0.88446 1.03253 1.20856 0.97774 0.98939 0.95624 1.22269 0.96192 0.96922 0.98855 1.22403 0.98202 0.98240 0.93784 1.98396 1.98533 1.63297 1.45579 1.20692 0.94171 0.98583 0.84674 0.92716 0.97759 0.97879 0.92101 0.93687 0.83119 0.84246 0.89234 0.88419 0.85671 0.90392 0.84893 0.88612 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.13 13.29 21.44 0.28 -53.85 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.03 1.59 4.74 29.85 0.14 1.73 16 10 C -0.12 -4.71 4.45 30.59 0.14 -4.58 16 11 C 0.08 2.67 2.35 44.17 0.10 2.77 16 12 H 0.11 3.40 7.06 -2.39 -0.02 3.39 16 13 N -0.83 -28.54 8.94 -171.81 -1.54 -30.08 16 14 C 0.53 17.42 6.97 87.66 0.61 18.03 16 15 O -0.56 -21.36 15.74 -3.05 -0.05 -21.41 16 16 N -0.61 -15.48 2.97 -823.30 -2.44 -17.92 16 17 C 0.10 1.94 6.50 86.25 0.56 2.50 16 18 C -0.09 -1.46 6.29 29.65 0.19 -1.27 16 19 C -0.12 -2.21 9.47 27.07 0.26 -1.96 16 20 C -0.10 -2.14 6.33 27.17 0.17 -1.97 16 21 Cl -0.09 -2.02 28.76 -2.72 -0.08 -2.10 16 22 C 0.14 3.26 5.84 85.40 0.50 3.76 16 23 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 24 H 0.00 0.21 6.87 -2.39 -0.02 0.20 16 25 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.06 2.34 6.78 -2.39 -0.02 2.33 16 27 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.35 12.30 7.55 -89.69 -0.68 11.62 16 29 H 0.34 12.05 8.58 -89.69 -0.77 11.28 16 30 H 0.09 1.95 7.07 -2.39 -0.02 1.93 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.13 2.03 7.94 -2.91 -0.02 2.01 16 35 H 0.10 2.58 4.88 -2.39 -0.01 2.57 16 36 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -65.24 309.69 1.23 -64.01 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.34 Total: 25.46 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 3.36 Total: -9.70 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -3.69 Total: -101.85 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.10 kcal Total: -65.24 1.23 -64.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691560725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.215 kcal (2) G-P(sol) polarization free energy of solvation -65.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds