Wall clock time and date at job start Mon Mar 30 2020 00:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00395 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00461 * 3 2 1 6 6 H 1.48504 * 109.46915 * 150.00316 * 3 2 1 7 7 C 1.37879 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00139 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21573 * 120.00276 * 359.72080 * 11 10 9 13 13 C 1.47658 * 119.99714 * 179.72385 * 11 10 9 14 14 C 1.40233 * 120.49652 * 179.72205 * 13 11 10 15 15 C 1.38026 * 118.35800 * 179.73290 * 14 13 11 16 16 C 1.39156 * 119.25170 * 0.54303 * 15 14 13 17 17 N 1.39501 * 119.52863 * 179.74606 * 16 15 14 18 18 C 1.37230 * 126.49428 * 184.68799 * 17 16 15 19 19 C 1.34595 * 106.81962 * 179.87001 * 18 17 16 20 20 N 1.34176 * 108.23399 * 0.39035 * 19 18 17 21 21 C 1.30453 * 109.39117 * 359.75001 * 20 19 18 22 22 N 1.32433 * 120.94508 * 359.71413 * 16 15 14 23 23 C 1.31632 * 121.80277 * 0.02562 * 22 16 15 24 24 H 0.97001 * 119.99511 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 26 26 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 27 27 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 28 28 H 1.07998 * 120.82327 * 359.97438 * 14 13 11 29 29 H 1.07996 * 120.37362 * 180.23438 * 15 14 13 30 30 H 1.07996 * 126.59329 * 0.02562 * 18 17 16 31 31 H 1.07995 * 125.87927 * 180.14037 * 19 18 17 32 32 H 1.07994 * 125.73300 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.68707 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0022 11 6 5.3249 -2.8217 0.0028 12 8 6.1150 -1.8976 0.0031 13 6 5.8170 -4.2138 0.0078 14 6 7.1935 -4.4821 0.0072 15 6 7.6046 -5.7996 0.0177 16 6 6.6482 -6.8104 0.0170 17 7 7.0573 -8.1441 0.0222 18 6 6.2459 -9.2471 -0.0680 19 6 7.0494 -10.3261 -0.0279 20 7 8.3166 -9.9016 0.0922 21 6 8.3355 -8.5976 0.1233 22 7 5.3551 -6.5244 0.0120 23 6 4.9194 -5.2823 0.0071 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.3694 -3.3126 -0.0021 28 1 7.9140 -3.6776 0.0027 29 1 8.6567 -6.0433 0.0214 30 1 5.1696 -9.2490 -0.1568 31 1 6.7290 -11.3561 -0.0791 32 1 9.2178 -7.9816 0.2145 33 1 3.8570 -5.0882 0.0028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701229208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:13 Heat of formation + Delta-G solvation = 73.687159 kcal Electronic energy + Delta-G solvation = -19081.561156 eV Core-core repulsion = 15915.939405 eV Total energy + Delta-G solvation = -3165.621751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.67006 -40.62147 -38.74852 -34.65238 -34.51419 -33.00190 -32.51768 -30.71873 -29.71693 -27.94748 -25.04654 -24.23763 -22.46602 -21.57862 -21.19772 -20.30531 -19.18660 -18.13128 -16.88706 -16.44818 -16.08340 -15.60503 -15.09462 -14.89225 -14.77292 -14.22294 -14.16036 -14.02361 -13.85229 -13.48624 -13.23475 -12.89580 -12.46708 -12.36140 -11.14899 -11.04268 -10.85721 -10.50872 -10.35318 -10.30284 -10.04727 -9.63558 -9.54080 -9.14949 -8.89466 -8.80512 -8.35952 -6.30209 -4.33908 0.06898 0.77884 1.76639 2.07348 2.77127 2.97134 3.20029 3.27131 3.34014 3.58927 3.68932 3.82175 4.13238 4.24995 4.30470 4.47616 4.49382 4.82074 4.98809 5.04936 5.10391 5.12270 5.25805 5.48951 5.72426 5.85651 5.97587 6.33533 6.64624 6.74621 6.92124 6.95557 7.23403 7.32210 7.62574 7.93973 8.31251 8.55022 8.69722 9.28392 10.81500 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.045407 B = 0.003277 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.496036 B = 8543.390131 C = 9143.562179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.694 5.694 11 C 0.547 3.453 12 O -0.548 6.548 13 C -0.182 4.182 14 C 0.007 3.993 15 C -0.187 4.187 16 C 0.356 3.644 17 N -0.411 5.411 18 C -0.022 4.022 19 C -0.032 4.032 20 N -0.479 5.479 21 C 0.194 3.806 22 N -0.499 5.499 23 C 0.169 3.831 24 H 0.269 0.731 25 H 0.030 0.970 26 H 0.025 0.975 27 H 0.396 0.604 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.184 0.816 31 H 0.177 0.823 32 H 0.213 0.787 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.695 -14.865 -0.036 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.586 4.586 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.342 5.342 11 C 0.332 3.668 12 O -0.428 6.428 13 C -0.188 4.188 14 C -0.019 4.019 15 C -0.209 4.209 16 C 0.128 3.872 17 N -0.094 5.094 18 C -0.152 4.152 19 C -0.177 4.177 20 N -0.196 5.196 21 C -0.088 4.088 22 N -0.211 5.211 23 C 0.010 3.990 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.231 0.769 28 H 0.177 0.823 29 H 0.166 0.834 30 H 0.201 0.799 31 H 0.194 0.806 32 H 0.229 0.771 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 14.088 -15.215 0.008 20.736 hybrid contribution -0.264 1.672 -0.065 1.694 sum 13.824 -13.544 -0.058 19.353 Atomic orbital electron populations 1.69876 1.06224 1.27576 1.48930 1.24790 0.94801 0.99195 0.93727 0.86820 0.80562 0.83216 0.79117 1.19770 1.20806 1.18473 1.21048 0.88277 0.95358 1.53929 0.90127 1.19597 0.95513 0.77901 0.97194 1.46172 1.05167 1.11621 1.71228 1.17875 0.83534 0.87157 0.78252 1.90756 1.55504 1.45153 1.51339 1.21317 0.95138 0.95842 1.06510 1.21637 0.95255 0.96138 0.88901 1.21516 1.00432 0.92019 1.06922 1.18344 0.90176 0.83078 0.95629 1.43141 1.08706 1.03879 1.53635 1.23022 0.98742 0.84993 1.08393 1.22421 0.88417 0.99276 1.07559 1.70329 1.22634 1.08378 1.18222 1.25381 0.86663 0.91563 1.05190 1.66999 1.14281 1.23647 1.16140 1.22929 1.00605 0.85131 0.90373 0.92124 0.95243 0.95699 0.76874 0.82264 0.83356 0.79893 0.80601 0.77091 0.80766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.96 55.43 0.77 -24.82 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 20.57 27.47 -169.99 -4.67 15.91 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.55 -14.31 9.83 -34.44 -0.34 -14.65 16 8 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 9 C 0.22 5.06 4.50 -5.19 -0.02 5.04 16 10 N -0.69 -12.89 5.50 -62.49 -0.34 -13.23 16 11 C 0.55 9.57 7.77 -12.41 -0.10 9.47 16 12 O -0.55 -11.37 16.41 5.30 0.09 -11.28 16 13 C -0.18 -2.41 5.89 -104.81 -0.62 -3.03 16 14 C 0.01 0.08 9.70 -38.91 -0.38 -0.30 16 15 C -0.19 -1.71 9.48 -39.32 -0.37 -2.08 16 16 C 0.36 3.92 7.49 -154.49 -1.16 2.77 16 17 N -0.41 -4.33 2.98 -63.80 -0.19 -4.52 16 18 C -0.02 -0.22 11.16 -16.42 -0.18 -0.41 16 19 C -0.03 -0.32 11.85 -17.82 -0.21 -0.54 16 20 N -0.48 -5.42 11.24 -14.46 -0.16 -5.58 16 21 C 0.19 1.82 11.89 -89.54 -1.06 0.76 16 22 N -0.50 -6.05 9.87 -11.99 -0.12 -6.17 16 23 C 0.17 2.02 10.71 -17.15 -0.18 1.84 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.03 0.72 7.20 -51.92 -0.37 0.34 16 26 H 0.03 0.60 7.57 -51.93 -0.39 0.20 16 27 H 0.40 6.30 6.37 -40.82 -0.26 6.04 16 28 H 0.16 1.60 7.73 -52.49 -0.41 1.20 16 29 H 0.15 0.83 6.75 -52.49 -0.35 0.48 16 30 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.21 1.14 7.05 -52.49 -0.37 0.77 16 33 H 0.18 1.79 6.41 -52.49 -0.34 1.45 16 LS Contribution 295.27 15.07 4.45 4.45 Total: -1.00 -33.00 295.27 -7.81 -40.82 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -2.92 Total: 3.50 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -4.72 Total: 0.93 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.04 Total: -54.32 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.00 -7.81 -40.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701229208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.505 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds