Wall clock time and date at job start Mon Mar 30 2020 00:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00395 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00461 * 3 2 1 6 6 H 1.48504 * 109.46915 * 150.00316 * 3 2 1 7 7 C 1.37879 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00139 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21573 * 120.00276 * 359.72080 * 11 10 9 13 13 C 1.47658 * 119.99714 * 179.72385 * 11 10 9 14 14 C 1.40233 * 120.49652 * 179.72205 * 13 11 10 15 15 C 1.38026 * 118.35800 * 179.73290 * 14 13 11 16 16 C 1.39156 * 119.25170 * 0.54303 * 15 14 13 17 17 N 1.39501 * 119.52863 * 179.74606 * 16 15 14 18 18 C 1.37230 * 126.49428 * 184.68799 * 17 16 15 19 19 C 1.34595 * 106.81962 * 179.87001 * 18 17 16 20 20 N 1.34176 * 108.23399 * 0.39035 * 19 18 17 21 21 C 1.30453 * 109.39117 * 359.75001 * 20 19 18 22 22 N 1.32433 * 120.94508 * 359.71413 * 16 15 14 23 23 C 1.31632 * 121.80277 * 0.02562 * 22 16 15 24 24 H 0.97001 * 119.99511 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 26 26 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 27 27 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 28 28 H 1.07998 * 120.82327 * 359.97438 * 14 13 11 29 29 H 1.07996 * 120.37362 * 180.23438 * 15 14 13 30 30 H 1.07996 * 126.59329 * 0.02562 * 18 17 16 31 31 H 1.07995 * 125.87927 * 180.14037 * 19 18 17 32 32 H 1.07994 * 125.73300 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.68707 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0022 11 6 5.3249 -2.8217 0.0028 12 8 6.1150 -1.8976 0.0031 13 6 5.8170 -4.2138 0.0078 14 6 7.1935 -4.4821 0.0072 15 6 7.6046 -5.7996 0.0177 16 6 6.6482 -6.8104 0.0170 17 7 7.0573 -8.1441 0.0222 18 6 6.2459 -9.2471 -0.0680 19 6 7.0494 -10.3261 -0.0279 20 7 8.3166 -9.9016 0.0922 21 6 8.3355 -8.5976 0.1233 22 7 5.3551 -6.5244 0.0120 23 6 4.9194 -5.2823 0.0071 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.3694 -3.3126 -0.0021 28 1 7.9140 -3.6776 0.0027 29 1 8.6567 -6.0433 0.0214 30 1 5.1696 -9.2490 -0.1568 31 1 6.7290 -11.3561 -0.0791 32 1 9.2178 -7.9816 0.2145 33 1 3.8570 -5.0882 0.0028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701229208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:13 Heat of formation + Delta-G solvation = 52.356339 kcal Electronic energy + Delta-G solvation = -19082.486130 eV Core-core repulsion = 15915.939405 eV Total energy + Delta-G solvation = -3166.546725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.42832 -41.62382 -40.06098 -36.30837 -35.41226 -34.45668 -33.86481 -31.76286 -30.55358 -29.58954 -26.10642 -25.13423 -24.04821 -22.63217 -21.99555 -21.56699 -20.00444 -19.59185 -18.26724 -17.84989 -16.90616 -16.70461 -16.37742 -16.29944 -16.18381 -15.36609 -14.95838 -14.87372 -14.84384 -14.70100 -14.35294 -14.23426 -14.09461 -13.80476 -13.07596 -12.71362 -11.93678 -11.89296 -11.66554 -11.38866 -11.27553 -11.20048 -10.92042 -10.81051 -10.14218 -9.89078 -9.55725 -8.39582 -6.47295 -0.83951 -0.04885 0.94513 1.30022 1.34631 1.37236 1.48647 1.81910 2.05276 2.23142 2.29238 2.64858 2.96333 2.99696 3.39037 3.56323 3.61836 3.70828 3.85856 4.05843 4.36691 4.41783 4.52284 4.68559 4.76490 4.89916 5.01430 5.06667 5.13646 5.24121 5.38768 5.61790 5.99861 6.05492 6.47844 6.52689 6.70168 6.88697 7.10178 7.25307 8.74980 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.045407 B = 0.003277 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.496036 B = 8543.390131 C = 9143.562179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.256 1.256 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.231 3.769 10 N -0.697 5.697 11 C 0.553 3.447 12 O -0.583 6.583 13 C -0.199 4.199 14 C 0.012 3.988 15 C -0.169 4.169 16 C 0.353 3.647 17 N -0.419 5.419 18 C -0.039 4.039 19 C -0.037 4.037 20 N -0.510 5.510 21 C 0.201 3.799 22 N -0.515 5.515 23 C 0.173 3.827 24 H 0.272 0.728 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.408 0.592 28 H 0.170 0.830 29 H 0.191 0.809 30 H 0.189 0.811 31 H 0.195 0.805 32 H 0.251 0.749 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.955 -15.497 -0.035 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.180 1.180 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.107 3.893 10 N -0.346 5.346 11 C 0.340 3.660 12 O -0.465 6.465 13 C -0.205 4.205 14 C -0.014 4.014 15 C -0.191 4.191 16 C 0.125 3.875 17 N -0.102 5.102 18 C -0.168 4.168 19 C -0.180 4.180 20 N -0.227 5.227 21 C -0.080 4.080 22 N -0.227 5.227 23 C 0.014 3.986 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.245 0.755 28 H 0.187 0.813 29 H 0.208 0.792 30 H 0.206 0.794 31 H 0.212 0.788 32 H 0.267 0.733 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 16.350 -15.906 0.007 22.811 hybrid contribution -0.916 1.684 -0.064 1.918 sum 15.434 -14.222 -0.057 20.987 Atomic orbital electron populations 1.69987 1.07783 1.28644 1.50589 1.25608 0.95518 1.02745 0.93555 0.85860 0.79384 0.79212 0.79473 1.18988 1.20132 1.17993 1.21284 0.89908 0.94662 1.52797 0.92112 1.19196 0.93428 0.80337 0.96311 1.45975 1.06292 1.10290 1.72029 1.18352 0.82452 0.88659 0.76521 1.90728 1.56115 1.46795 1.52820 1.20947 0.96532 0.93295 1.09741 1.21812 0.94261 0.97356 0.87997 1.21845 1.02125 0.90397 1.04722 1.18664 0.90249 0.83764 0.94800 1.43278 1.09235 1.03655 1.54025 1.23238 0.99276 0.85177 1.09100 1.22801 0.88161 1.00256 1.06806 1.70355 1.23233 1.09553 1.19607 1.26204 0.87208 0.91526 1.03049 1.67010 1.15367 1.23397 1.16954 1.22981 1.00916 0.84869 0.89857 0.91860 0.96247 0.96362 0.75502 0.81265 0.79159 0.79359 0.78795 0.73324 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.40 13.96 21.45 0.30 -54.10 16 2 C 0.03 1.43 5.47 84.65 0.46 1.90 16 3 Si 0.94 42.40 27.47 68.60 1.88 44.28 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -11.30 6.54 99.48 0.65 -10.65 16 7 C -0.55 -29.03 9.83 25.60 0.25 -28.77 16 8 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16 9 C 0.23 10.65 4.50 85.63 0.38 11.04 16 10 N -0.70 -25.85 5.50 -469.88 -2.58 -28.44 16 11 C 0.55 19.02 7.77 86.73 0.67 19.70 16 12 O -0.58 -23.88 16.41 -3.95 -0.06 -23.94 16 13 C -0.20 -5.01 5.89 -19.99 -0.12 -5.12 16 14 C 0.01 0.23 9.70 22.70 0.22 0.45 16 15 C -0.17 -2.47 9.48 22.44 0.21 -2.26 16 16 C 0.35 6.85 7.49 132.89 1.00 7.85 16 17 N -0.42 -7.74 2.98 -355.78 -1.06 -8.80 16 18 C -0.04 -0.74 11.16 83.01 0.93 0.19 16 19 C -0.04 -0.68 11.85 83.50 0.99 0.31 16 20 N -0.51 -10.41 11.24 -199.65 -2.24 -12.65 16 21 C 0.20 3.14 11.89 179.97 2.14 5.28 16 22 N -0.52 -11.67 9.87 -191.84 -1.89 -13.56 16 23 C 0.17 3.94 10.71 85.04 0.91 4.85 16 24 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.02 0.95 7.20 -2.38 -0.02 0.93 16 26 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 27 H 0.41 13.03 6.37 -92.71 -0.59 12.44 16 28 H 0.17 2.94 7.73 -2.91 -0.02 2.92 16 29 H 0.19 1.09 6.75 -2.91 -0.02 1.07 16 30 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 31 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.25 1.48 7.05 -2.91 -0.02 1.46 16 33 H 0.18 3.64 6.41 -2.91 -0.02 3.62 16 Total: -1.00 -71.32 295.27 2.91 -68.41 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.52 Total: 13.40 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 8.05 Total: 15.41 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -7.48 Total: -117.56 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Total: -71.32 2.91 -68.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701229208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.769 kcal (2) G-P(sol) polarization free energy of solvation -71.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds