Wall clock time and date at job start Mon Mar 30 2020 01:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36881 * 120.00345 * 2 1 4 4 H 1.07999 * 120.00476 * 201.53473 * 3 2 1 5 5 C 1.39039 * 120.00097 * 21.53138 * 3 2 1 6 6 N 1.31375 * 119.99807 * 13.49689 * 5 3 2 7 7 Si 1.86800 * 120.00104 * 193.49186 * 5 3 2 8 8 H 1.48502 * 109.47132 * 90.00408 * 7 5 3 9 9 H 1.48502 * 109.47250 * 210.00137 * 7 5 3 10 10 H 1.48497 * 109.47141 * 330.00510 * 7 5 3 11 11 C 1.34774 * 119.99576 * 179.97438 * 2 1 3 12 12 O 1.21621 * 119.99852 * 184.66122 * 11 2 1 13 13 C 1.47549 * 120.00335 * 4.66680 * 11 2 1 14 14 C 1.40297 * 120.50143 * 319.15536 * 13 11 2 15 15 C 1.38001 * 118.35311 * 179.97438 * 14 13 11 16 16 C 1.39169 * 119.26315 * 0.02562 * 15 14 13 17 17 N 1.39491 * 119.52214 * 179.97438 * 16 15 14 18 18 C 1.37227 * 126.49716 * 185.25699 * 17 16 15 19 19 C 1.34592 * 106.82614 * 180.13876 * 18 17 16 20 20 N 1.34175 * 108.23614 * 359.61830 * 19 18 17 21 21 C 1.30459 * 109.38330 * 0.23829 * 20 19 18 22 22 N 1.32439 * 120.95708 * 0.25656 * 16 15 14 23 23 C 1.31624 * 121.80655 * 359.47225 * 22 16 15 24 24 H 1.08997 * 109.47661 * 264.73715 * 1 2 3 25 25 H 1.09001 * 109.46739 * 24.73801 * 1 2 3 26 26 H 1.08993 * 109.47221 * 144.73272 * 1 2 3 27 27 H 0.97000 * 119.99838 * 179.97438 * 6 5 3 28 28 H 1.08001 * 120.82029 * 359.95590 * 14 13 11 29 29 H 1.08001 * 120.36713 * 179.97438 * 15 14 13 30 30 H 1.08003 * 126.59029 * 0.02562 * 18 17 16 31 31 H 1.07999 * 125.88531 * 179.88319 * 19 18 17 32 32 H 1.07995 * 125.72723 * 179.97438 * 21 20 19 33 33 H 1.07998 * 119.69146 * 180.25361 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1854 0.0000 4 1 3.1729 1.2181 -0.3433 5 6 1.5272 2.3475 0.4419 6 7 0.3928 2.2754 1.1007 7 14 2.3040 4.0114 0.0990 8 1 1.8040 4.5332 -1.1983 9 1 1.9449 4.9586 1.1849 10 1 3.7805 3.8651 0.0378 11 6 2.1388 -1.1672 0.0005 12 8 3.3520 -1.1690 0.0861 13 6 1.4047 -2.4430 -0.1029 14 6 0.2041 -2.6325 0.5978 15 6 -0.4461 -3.8428 0.4686 16 6 0.1056 -4.8280 -0.3449 17 7 -0.5468 -6.0536 -0.4790 18 6 -0.0853 -7.1540 -1.1567 19 6 -1.0257 -8.1092 -1.0350 20 7 -2.0323 -7.6159 -0.2975 21 6 -1.7582 -6.3864 0.0418 22 7 1.2439 -4.6207 -0.9894 23 6 1.8945 -3.4801 -0.8990 24 1 -0.3634 -0.0943 1.0233 25 1 -0.3633 0.9334 -0.4301 26 1 -0.3633 -0.8390 -0.5933 27 1 -0.0412 3.0862 1.4094 28 1 -0.2011 -1.8505 1.2230 29 1 -1.3723 -4.0238 0.9937 30 1 0.8516 -7.2371 -1.6876 31 1 -0.9766 -9.1031 -1.4546 32 1 -2.3879 -5.7410 0.6361 33 1 2.8181 -3.3465 -1.4427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701231195.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:17 Heat of formation + Delta-G solvation = 75.390568 kcal Electronic energy + Delta-G solvation = -19792.331624 eV Core-core repulsion = 16626.783738 eV Total energy + Delta-G solvation = -3165.547886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.37579 -41.54255 -39.86701 -36.83030 -35.31583 -34.25221 -33.33128 -31.33928 -30.33333 -28.38990 -26.99861 -25.26807 -24.96060 -22.50735 -21.96118 -21.29036 -19.86381 -19.09768 -18.26870 -17.39713 -17.02644 -16.77325 -16.33613 -16.01090 -15.81248 -15.30538 -14.93853 -14.85242 -14.72408 -14.52304 -14.34819 -13.81259 -13.45321 -13.24944 -13.20547 -12.59781 -12.51004 -12.14977 -11.77962 -11.24740 -11.11411 -11.04632 -10.98709 -10.50944 -9.88710 -9.79400 -9.49901 -8.44271 -6.04001 -0.63760 0.00920 1.04959 1.35883 1.39068 1.42897 1.53982 1.95581 2.08249 2.22778 2.62673 2.88540 3.05138 3.13460 3.47952 3.67153 3.74475 3.78351 3.93270 4.18882 4.43203 4.48434 4.52933 4.56180 4.76245 4.90475 4.94451 5.14034 5.22347 5.32355 5.39026 5.65855 5.98793 6.05952 6.37270 6.57276 6.92499 7.05632 7.31316 7.88323 8.58090 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.047493 B = 0.003900 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.417537 B = 7177.561960 C = 7631.406690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.439 5.439 3 C -0.347 4.347 4 H 0.076 0.924 5 C 0.005 3.995 6 N -0.883 5.883 7 Si 0.991 3.009 8 H -0.264 1.264 9 H -0.271 1.271 10 H -0.276 1.276 11 C 0.468 3.532 12 O -0.631 6.631 13 C -0.169 4.169 14 C -0.025 4.025 15 C -0.162 4.162 16 C 0.337 3.663 17 N -0.415 5.415 18 C -0.042 4.042 19 C -0.036 4.036 20 N -0.510 5.510 21 C 0.199 3.801 22 N -0.510 5.510 23 C 0.169 3.831 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.279 0.721 28 H 0.166 0.834 29 H 0.191 0.809 30 H 0.187 0.813 31 H 0.197 0.803 32 H 0.249 0.751 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 -10.998 -1.794 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.154 5.154 3 C -0.475 4.475 4 H 0.094 0.906 5 C -0.199 4.199 6 N -0.521 5.521 7 Si 0.814 3.186 8 H -0.189 1.189 9 H -0.196 1.196 10 H -0.201 1.201 11 C 0.258 3.742 12 O -0.520 6.520 13 C -0.175 4.175 14 C -0.051 4.051 15 C -0.184 4.184 16 C 0.108 3.892 17 N -0.098 5.098 18 C -0.171 4.171 19 C -0.180 4.180 20 N -0.227 5.227 21 C -0.082 4.082 22 N -0.222 5.222 23 C 0.010 3.990 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.183 0.817 29 H 0.208 0.792 30 H 0.204 0.796 31 H 0.214 0.786 32 H 0.265 0.735 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.739 -11.890 -1.983 14.325 hybrid contribution 1.132 1.984 0.128 2.288 sum -6.608 -9.906 -1.855 12.051 Atomic orbital electron populations 1.21838 0.79086 1.01293 1.00906 1.43745 1.07063 1.04409 1.60206 1.19708 0.99149 0.85166 1.43470 0.90579 1.26087 0.96873 1.02808 0.94092 1.70006 1.17884 1.30943 1.33232 0.84963 0.78356 0.76687 0.78578 1.18929 1.19622 1.20096 1.18268 0.87117 0.83929 0.84862 1.90602 1.15594 1.87477 1.58345 1.21002 0.97914 0.96223 1.02387 1.22149 0.91045 0.97314 0.94598 1.21792 1.03911 0.91754 1.00899 1.18555 0.90646 0.85629 0.94332 1.43216 1.17115 1.09076 1.40356 1.23214 1.03398 0.86860 1.03643 1.22786 0.91002 1.01359 1.02848 1.70356 1.28113 1.08340 1.15885 1.26158 0.85772 0.94525 1.01738 1.66982 1.07925 1.23810 1.23475 1.22568 0.97510 0.85321 0.93601 0.92172 0.91564 0.92049 0.91125 0.81667 0.79224 0.79616 0.78621 0.73527 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.44 7.22 127.77 0.92 5.36 16 2 N -0.44 -21.49 3.01 -662.52 -2.00 -23.49 16 3 C -0.35 -18.81 9.27 84.10 0.78 -18.03 16 4 H 0.08 4.43 7.44 -2.91 -0.02 4.41 16 5 C 0.01 0.25 5.04 84.95 0.43 0.68 16 6 N -0.88 -43.08 10.70 21.68 0.23 -42.85 16 7 Si 0.99 39.92 29.57 68.60 2.03 41.94 16 8 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 9 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 10 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 11 C 0.47 22.43 7.29 86.70 0.63 23.06 16 12 O -0.63 -35.45 16.66 -4.10 -0.07 -35.52 16 13 C -0.17 -6.14 5.18 -19.99 -0.10 -6.24 16 14 C -0.02 -0.69 7.72 22.71 0.18 -0.51 16 15 C -0.16 -3.51 9.48 22.44 0.21 -3.30 16 16 C 0.34 8.70 7.49 132.89 1.00 9.70 16 17 N -0.42 -9.67 2.98 -355.76 -1.06 -10.73 16 18 C -0.04 -0.95 11.16 83.01 0.93 -0.03 16 19 C -0.04 -0.77 11.85 83.50 0.99 0.22 16 20 N -0.51 -12.04 11.24 -199.64 -2.24 -14.28 16 21 C 0.20 3.93 11.88 179.97 2.14 6.07 16 22 N -0.51 -15.41 9.87 -191.79 -1.89 -17.30 16 23 C 0.17 5.65 10.81 85.06 0.92 6.57 16 24 H 0.06 2.32 6.65 -2.39 -0.02 2.30 16 25 H 0.07 2.86 6.53 -2.39 -0.02 2.85 16 26 H 0.06 2.02 5.97 -2.39 -0.01 2.01 16 27 H 0.28 12.66 8.31 -92.71 -0.77 11.89 16 28 H 0.17 4.39 5.55 -2.91 -0.02 4.37 16 29 H 0.19 2.28 6.75 -2.91 -0.02 2.26 16 30 H 0.19 3.83 8.06 -2.91 -0.02 3.81 16 31 H 0.20 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.25 2.58 7.05 -2.91 -0.02 2.56 16 33 H 0.17 5.59 8.06 -2.91 -0.02 5.56 16 Total: -1.00 -68.73 288.17 5.18 -63.55 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.16 Total: 15.13 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 9.02 Total: 23.55 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -6.96 Total: -108.65 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.07 Total: -35.52 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.94 kcal Total: -68.73 5.18 -63.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701231195.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.943 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds