Wall clock time and date at job start Mon Mar 30 2020 01:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36885 * 119.99686 * 2 1 4 4 H 1.08006 * 119.99806 * 192.88163 * 3 2 1 5 5 C 1.39034 * 120.00110 * 12.88056 * 3 2 1 6 6 N 1.31368 * 120.00096 * 28.39331 * 5 3 2 7 7 Si 1.86806 * 119.99823 * 208.39356 * 5 3 2 8 8 H 1.48495 * 109.46848 * 94.99560 * 7 5 3 9 9 H 1.48498 * 109.47129 * 214.99678 * 7 5 3 10 10 H 1.48500 * 109.46832 * 334.99567 * 7 5 3 11 11 C 1.34777 * 120.00017 * 180.02562 * 2 1 3 12 12 O 1.21624 * 119.99988 * 183.97368 * 11 2 1 13 13 C 1.47475 * 119.99899 * 3.97537 * 11 2 1 14 14 C 1.40034 * 120.60169 * 309.21140 * 13 11 2 15 15 C 1.38330 * 118.34106 * 180.02562 * 14 13 11 16 16 C 1.38403 * 119.46198 * 0.28821 * 15 14 13 17 17 N 1.31858 * 121.19645 * 359.40981 * 16 15 14 18 18 C 1.32244 * 121.80608 * 0.60046 * 17 16 15 19 19 N 1.39346 * 119.80371 * 179.67597 * 18 17 16 20 20 C 1.35937 * 126.10936 * 333.05274 * 19 18 17 21 21 C 1.35230 * 107.60711 * 179.89574 * 20 19 18 22 22 C 1.40013 * 107.97047 * 0.36595 * 21 20 19 23 23 N 1.30786 * 108.37919 * 359.77108 * 22 21 20 24 24 H 1.08997 * 109.47185 * 267.42635 * 1 2 3 25 25 H 1.09002 * 109.47474 * 27.42748 * 1 2 3 26 26 H 1.09001 * 109.46997 * 147.42614 * 1 2 3 27 27 H 0.97002 * 119.99666 * 180.02562 * 6 5 3 28 28 H 1.07999 * 120.83023 * 0.05153 * 14 13 11 29 29 H 1.07997 * 120.26745 * 180.02562 * 15 14 13 30 30 H 1.07995 * 119.40537 * 179.70119 * 16 15 14 31 31 H 1.08007 * 126.19400 * 0.03167 * 20 19 18 32 32 H 1.08007 * 126.01744 * 180.15296 * 21 20 19 33 33 H 1.08000 * 125.81048 * 179.74477 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1855 0.0000 4 1 3.2090 1.1973 -0.2085 5 6 1.4804 2.3744 0.2684 6 7 0.4129 2.3691 1.0341 7 14 2.0994 3.9794 -0.4599 8 1 1.3684 4.2654 -1.7204 9 1 1.8697 5.0828 0.5070 10 1 3.5523 3.8656 -0.7451 11 6 2.1389 -1.1672 -0.0005 12 8 3.3529 -1.1685 0.0725 13 6 1.4041 -2.4428 -0.0896 14 6 0.3338 -2.7107 0.7727 15 6 -0.3221 -3.9223 0.6485 16 6 0.0972 -4.8283 -0.3100 17 7 1.1041 -4.5532 -1.1157 18 6 1.7654 -3.4105 -1.0398 19 7 2.8276 -3.1659 -1.9080 20 6 3.6160 -4.1056 -2.4939 21 6 4.5226 -3.4585 -3.2608 22 6 4.2904 -2.0834 -3.1367 23 7 3.2775 -1.9075 -2.3283 24 1 -0.3633 -0.0461 1.0266 25 1 -0.3634 0.9121 -0.4734 26 1 -0.3633 -0.8660 -0.5533 27 1 -0.0540 3.1985 1.2211 28 1 0.0278 -1.9893 1.5158 29 1 -1.1520 -4.1610 1.2972 30 1 -0.4124 -5.7759 -0.4029 31 1 3.5321 -5.1754 -2.3710 32 1 5.2926 -3.9209 -3.8606 33 1 4.8524 -1.3010 -3.6250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725712951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:14 Heat of formation + Delta-G solvation = 118.382541 kcal Electronic energy + Delta-G solvation = -20797.605020 eV Core-core repulsion = 17633.921406 eV Total energy + Delta-G solvation = -3163.683614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17552 -39.73940 -37.95169 -34.70304 -33.34037 -32.48439 -31.37497 -29.92513 -29.13568 -26.39153 -25.18993 -23.72246 -23.47915 -20.84819 -20.53864 -19.51897 -18.01861 -16.96698 -16.43002 -16.21517 -15.23176 -15.03286 -14.75221 -14.19161 -14.08198 -13.75014 -13.47848 -13.21356 -13.04891 -12.81845 -12.41187 -12.10914 -11.56086 -11.50703 -11.42120 -10.90775 -10.37518 -10.30854 -10.25051 -10.02035 -9.66433 -9.45782 -8.99973 -8.77791 -8.36191 -7.95742 -7.77251 -6.47152 -3.76408 0.88175 1.24778 2.44587 2.56956 3.14619 3.22824 3.25426 3.31455 3.68974 4.04920 4.17087 4.51758 4.69445 4.91925 4.99007 5.02995 5.24796 5.27799 5.41763 5.46074 5.80228 5.83353 5.96716 6.19437 6.23287 6.27359 6.27982 6.57638 6.70790 6.94335 7.02054 7.46382 7.53668 7.73180 8.06881 8.20841 8.45967 9.17152 9.39018 9.99841 10.59396 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018925 B = 0.007425 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.156525 B = 3770.041884 C = 5007.341621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.426 5.426 3 C -0.300 4.300 4 H 0.106 0.894 5 C 0.033 3.967 6 N -0.862 5.862 7 Si 0.916 3.084 8 H -0.277 1.277 9 H -0.285 1.285 10 H -0.267 1.267 11 C 0.490 3.510 12 O -0.567 6.567 13 C -0.130 4.130 14 C -0.039 4.039 15 C -0.187 4.187 16 C 0.122 3.878 17 N -0.507 5.507 18 C 0.389 3.611 19 N -0.319 5.319 20 C 0.063 3.937 21 C -0.265 4.265 22 C 0.043 3.957 23 N -0.221 5.221 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.269 0.731 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.163 0.837 31 H 0.173 0.827 32 H 0.149 0.851 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 -11.279 -3.940 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.143 5.143 3 C -0.427 4.427 4 H 0.124 0.876 5 C -0.172 4.172 6 N -0.500 5.500 7 Si 0.743 3.257 8 H -0.203 1.203 9 H -0.211 1.211 10 H -0.191 1.191 11 C 0.277 3.723 12 O -0.451 6.451 13 C -0.139 4.139 14 C -0.066 4.066 15 C -0.208 4.208 16 C -0.037 4.037 17 N -0.220 5.220 18 C 0.160 3.840 19 N -0.097 5.097 20 C -0.078 4.078 21 C -0.294 4.294 22 C -0.147 4.147 23 N -0.038 5.038 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.166 0.834 29 H 0.160 0.840 30 H 0.181 0.819 31 H 0.190 0.810 32 H 0.167 0.833 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.615 -10.868 -3.829 11.816 hybrid contribution 0.284 0.753 -0.001 0.805 sum -2.331 -10.115 -3.829 11.064 Atomic orbital electron populations 1.21624 0.81593 1.00193 1.00553 1.43430 1.05178 1.04701 1.61023 1.19690 0.95865 0.81767 1.45375 0.87589 1.25232 0.96705 0.99644 0.95628 1.70128 1.20697 1.28777 1.30427 0.86064 0.79786 0.80860 0.79036 1.20328 1.21070 1.19093 1.17143 0.87193 0.82076 0.85866 1.90627 1.12971 1.85941 1.55563 1.21010 0.98133 0.98479 0.96237 1.21906 0.91579 0.96565 0.96504 1.22042 1.02460 0.94879 1.01393 1.22486 0.91516 0.99130 0.90526 1.66876 1.09006 1.19375 1.26777 1.17548 0.87645 0.90555 0.88217 1.45544 1.23327 1.05403 1.35441 1.22703 0.92963 0.96182 0.95935 1.21513 1.05430 0.93565 1.08866 1.24095 0.96548 0.96865 0.97221 1.77949 1.14424 0.98338 1.13099 0.92957 0.90598 0.95339 0.92077 0.83380 0.84034 0.81949 0.80971 0.83282 0.79720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.36 7.51 59.85 0.45 2.81 16 2 N -0.43 -11.19 3.02 -123.41 -0.37 -11.56 16 3 C -0.30 -8.44 9.32 -15.00 -0.14 -8.58 16 4 H 0.11 3.19 7.40 -52.48 -0.39 2.80 16 5 C 0.03 0.86 4.73 -17.45 -0.08 0.78 16 6 N -0.86 -22.66 11.17 55.50 0.62 -22.04 16 7 Si 0.92 20.64 29.64 -169.99 -5.04 15.60 16 8 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 C 0.49 12.64 5.79 -12.50 -0.07 12.57 16 12 O -0.57 -16.52 14.75 5.26 0.08 -16.44 16 13 C -0.13 -2.77 4.83 -104.67 -0.51 -3.28 16 14 C -0.04 -0.65 7.93 -38.87 -0.31 -0.96 16 15 C -0.19 -2.39 10.09 -39.49 -0.40 -2.79 16 16 C 0.12 1.59 11.17 -17.48 -0.20 1.39 16 17 N -0.51 -8.53 10.01 -12.01 -0.12 -8.65 16 18 C 0.39 7.85 7.40 -154.36 -1.14 6.71 16 19 N -0.32 -6.60 3.52 -11.88 -0.04 -6.65 16 20 C 0.06 1.06 11.21 -16.80 -0.19 0.87 16 21 C -0.27 -4.07 10.80 -39.99 -0.43 -4.50 16 22 C 0.04 0.77 12.02 -17.33 -0.21 0.56 16 23 N -0.22 -4.97 9.17 30.65 0.28 -4.69 16 24 H 0.05 1.15 7.15 -51.93 -0.37 0.78 16 25 H 0.08 1.81 6.55 -51.93 -0.34 1.47 16 26 H 0.03 0.57 6.19 -51.93 -0.32 0.25 16 27 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.15 2.41 6.66 -52.49 -0.35 2.06 16 29 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.17 2.33 8.06 -52.48 -0.42 1.91 16 32 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.19 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 287.95 15.07 4.34 4.34 Total: -1.00 -34.39 287.95 -6.50 -40.88 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -3.02 Total: 3.63 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -3.22 Total: 5.58 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.37 Total: -53.58 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.08 Total: -16.44 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.04 Total: 15.60 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.39 -6.50 -40.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725712951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.267 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds