Wall clock time and date at job start Mon Mar 30 2020 01:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36885 * 119.99686 * 2 1 4 4 H 1.08006 * 119.99806 * 192.88163 * 3 2 1 5 5 C 1.39034 * 120.00110 * 12.88056 * 3 2 1 6 6 N 1.31368 * 120.00096 * 28.39331 * 5 3 2 7 7 Si 1.86806 * 119.99823 * 208.39356 * 5 3 2 8 8 H 1.48495 * 109.46848 * 94.99560 * 7 5 3 9 9 H 1.48498 * 109.47129 * 214.99678 * 7 5 3 10 10 H 1.48500 * 109.46832 * 334.99567 * 7 5 3 11 11 C 1.34777 * 120.00017 * 180.02562 * 2 1 3 12 12 O 1.21624 * 119.99988 * 183.97368 * 11 2 1 13 13 C 1.47475 * 119.99899 * 3.97537 * 11 2 1 14 14 C 1.40034 * 120.60169 * 309.21140 * 13 11 2 15 15 C 1.38330 * 118.34106 * 180.02562 * 14 13 11 16 16 C 1.38403 * 119.46198 * 0.28821 * 15 14 13 17 17 N 1.31858 * 121.19645 * 359.40981 * 16 15 14 18 18 C 1.32244 * 121.80608 * 0.60046 * 17 16 15 19 19 N 1.39346 * 119.80371 * 179.67597 * 18 17 16 20 20 C 1.35937 * 126.10936 * 333.05274 * 19 18 17 21 21 C 1.35230 * 107.60711 * 179.89574 * 20 19 18 22 22 C 1.40013 * 107.97047 * 0.36595 * 21 20 19 23 23 N 1.30786 * 108.37919 * 359.77108 * 22 21 20 24 24 H 1.08997 * 109.47185 * 267.42635 * 1 2 3 25 25 H 1.09002 * 109.47474 * 27.42748 * 1 2 3 26 26 H 1.09001 * 109.46997 * 147.42614 * 1 2 3 27 27 H 0.97002 * 119.99666 * 180.02562 * 6 5 3 28 28 H 1.07999 * 120.83023 * 0.05153 * 14 13 11 29 29 H 1.07997 * 120.26745 * 180.02562 * 15 14 13 30 30 H 1.07995 * 119.40537 * 179.70119 * 16 15 14 31 31 H 1.08007 * 126.19400 * 0.03167 * 20 19 18 32 32 H 1.08007 * 126.01744 * 180.15296 * 21 20 19 33 33 H 1.08000 * 125.81048 * 179.74477 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1855 0.0000 4 1 3.2090 1.1973 -0.2085 5 6 1.4804 2.3744 0.2684 6 7 0.4129 2.3691 1.0341 7 14 2.0994 3.9794 -0.4599 8 1 1.3684 4.2654 -1.7204 9 1 1.8697 5.0828 0.5070 10 1 3.5523 3.8656 -0.7451 11 6 2.1389 -1.1672 -0.0005 12 8 3.3529 -1.1685 0.0725 13 6 1.4041 -2.4428 -0.0896 14 6 0.3338 -2.7107 0.7727 15 6 -0.3221 -3.9223 0.6485 16 6 0.0972 -4.8283 -0.3100 17 7 1.1041 -4.5532 -1.1157 18 6 1.7654 -3.4105 -1.0398 19 7 2.8276 -3.1659 -1.9080 20 6 3.6160 -4.1056 -2.4939 21 6 4.5226 -3.4585 -3.2608 22 6 4.2904 -2.0834 -3.1367 23 7 3.2775 -1.9075 -2.3283 24 1 -0.3633 -0.0461 1.0266 25 1 -0.3634 0.9121 -0.4734 26 1 -0.3633 -0.8660 -0.5533 27 1 -0.0540 3.1985 1.2211 28 1 0.0278 -1.9893 1.5158 29 1 -1.1520 -4.1610 1.2972 30 1 -0.4124 -5.7759 -0.4029 31 1 3.5321 -5.1754 -2.3710 32 1 5.2926 -3.9209 -3.8606 33 1 4.8524 -1.3010 -3.6250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725712951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:13 Heat of formation + Delta-G solvation = 95.102180 kcal Electronic energy + Delta-G solvation = -20798.614532 eV Core-core repulsion = 17633.921406 eV Total energy + Delta-G solvation = -3164.693126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.53050 -41.12381 -39.72806 -36.68633 -34.67377 -34.09826 -33.12651 -31.27622 -30.45189 -28.29607 -26.94891 -25.05892 -24.99056 -22.29294 -21.85993 -21.13685 -19.35483 -18.94317 -18.12859 -17.56942 -16.88311 -16.44925 -16.22139 -15.96591 -15.56404 -15.44314 -14.88929 -14.64989 -14.35881 -14.27307 -13.73047 -13.64280 -13.36779 -13.29747 -13.23911 -12.68531 -12.37294 -12.16980 -11.61748 -11.33675 -10.98806 -10.96591 -10.89042 -10.31088 -10.09796 -9.76927 -9.26504 -8.47881 -5.87642 -0.41785 -0.01476 1.16678 1.28153 1.33553 1.38561 1.50960 1.93109 2.04092 2.24132 2.66184 2.87509 3.12807 3.38085 3.53153 3.86696 3.89682 4.02430 4.09297 4.27342 4.42389 4.52643 4.62677 4.74867 4.86038 4.96271 5.05608 5.08951 5.15314 5.44831 5.46104 5.67607 6.00992 6.19083 6.43723 6.49500 6.87771 7.15275 7.42001 8.04609 8.58542 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018925 B = 0.007425 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.156525 B = 3770.041884 C = 5007.341621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.445 5.445 3 C -0.343 4.343 4 H 0.069 0.931 5 C 0.006 3.994 6 N -0.877 5.877 7 Si 0.979 3.021 8 H -0.267 1.267 9 H -0.270 1.270 10 H -0.277 1.277 11 C 0.491 3.509 12 O -0.615 6.615 13 C -0.176 4.176 14 C -0.043 4.043 15 C -0.161 4.161 16 C 0.140 3.860 17 N -0.511 5.511 18 C 0.368 3.632 19 N -0.338 5.338 20 C 0.054 3.946 21 C -0.253 4.253 22 C 0.034 3.966 23 N -0.293 5.293 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.277 0.723 28 H 0.147 0.853 29 H 0.196 0.804 30 H 0.221 0.779 31 H 0.204 0.796 32 H 0.192 0.808 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 -13.633 -4.203 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.162 5.162 3 C -0.470 4.470 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.514 5.514 7 Si 0.802 3.198 8 H -0.192 1.192 9 H -0.195 1.195 10 H -0.202 1.202 11 C 0.280 3.720 12 O -0.502 6.502 13 C -0.184 4.184 14 C -0.070 4.070 15 C -0.181 4.181 16 C -0.019 4.019 17 N -0.225 5.225 18 C 0.141 3.859 19 N -0.116 5.116 20 C -0.085 4.085 21 C -0.281 4.281 22 C -0.156 4.156 23 N -0.111 5.111 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.165 0.835 29 H 0.213 0.787 30 H 0.237 0.763 31 H 0.220 0.780 32 H 0.209 0.791 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.463 -13.228 -4.094 14.548 hybrid contribution 0.793 1.264 0.111 1.496 sum -3.670 -11.964 -3.983 13.133 Atomic orbital electron populations 1.21506 0.79800 1.00186 1.00745 1.43596 1.06352 1.04455 1.61804 1.19458 0.95035 0.83821 1.48735 0.91312 1.25908 0.96937 1.01853 0.95050 1.70141 1.21156 1.29963 1.30166 0.85156 0.78634 0.77235 0.78753 1.19179 1.19473 1.20177 1.17855 0.86964 0.83503 0.83633 1.90550 1.15387 1.87196 1.57063 1.20748 1.00928 0.96983 0.99721 1.22054 0.90721 0.98561 0.95629 1.22574 1.02257 0.92277 1.00988 1.23602 0.89364 1.00665 0.88225 1.67067 1.09924 1.17631 1.27847 1.17768 0.88331 0.91340 0.88416 1.45734 1.24257 1.05459 1.36197 1.23383 0.92495 0.97251 0.95419 1.21981 1.05633 0.92116 1.08371 1.24687 0.95636 0.99076 0.96157 1.77852 1.16986 1.00661 1.15610 0.92694 0.92360 0.93118 0.91278 0.83490 0.78722 0.76299 0.77951 0.79103 0.77668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.63 7.51 127.77 0.96 6.59 16 2 N -0.44 -24.65 3.02 -662.59 -2.00 -26.66 16 3 C -0.34 -20.59 9.32 84.10 0.78 -19.81 16 4 H 0.07 4.52 7.40 -2.91 -0.02 4.50 16 5 C 0.01 0.34 4.73 84.95 0.40 0.74 16 6 N -0.88 -46.83 11.17 21.68 0.24 -46.59 16 7 Si 0.98 43.52 29.64 68.60 2.03 45.55 16 8 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 C 0.49 26.86 5.79 86.68 0.50 27.36 16 12 O -0.62 -38.53 14.75 -4.11 -0.06 -38.59 16 13 C -0.18 -7.60 4.83 -19.89 -0.10 -7.70 16 14 C -0.04 -1.39 7.93 22.73 0.18 -1.21 16 15 C -0.16 -3.35 10.09 22.33 0.23 -3.12 16 16 C 0.14 2.92 11.17 84.73 0.95 3.87 16 17 N -0.51 -15.79 10.01 -191.90 -1.92 -17.72 16 18 C 0.37 14.83 7.40 133.29 0.99 15.82 16 19 N -0.34 -14.25 3.52 -191.49 -0.67 -14.92 16 20 C 0.05 1.78 11.21 83.36 0.93 2.71 16 21 C -0.25 -7.51 10.80 22.01 0.24 -7.28 16 22 C 0.03 1.25 12.02 85.28 1.02 2.27 16 23 N -0.29 -13.87 9.17 -56.96 -0.52 -14.39 16 24 H 0.05 2.46 7.15 -2.39 -0.02 2.44 16 25 H 0.06 2.86 6.55 -2.39 -0.02 2.85 16 26 H 0.05 2.07 6.19 -2.39 -0.01 2.06 16 27 H 0.28 13.67 8.31 -92.71 -0.77 12.89 16 28 H 0.15 4.67 6.66 -2.91 -0.02 4.65 16 29 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 30 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.20 5.05 8.06 -2.91 -0.02 5.03 16 32 H 0.19 3.82 8.06 -2.91 -0.02 3.80 16 33 H 0.21 6.20 8.06 -2.91 -0.02 6.17 16 Total: -1.00 -83.07 287.95 5.33 -77.74 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 1.14 Total: 15.33 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 7.09 Total: 20.25 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -4.88 Total: -120.28 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.06 Total: -38.59 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -83.07 5.33 -77.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725712951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.847 kcal (2) G-P(sol) polarization free energy of solvation -83.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds