Wall clock time and date at job start Mon Mar 30 2020 01:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31696 * 119.71782 * 2 1 4 4 C 1.31923 * 121.88120 * 179.97438 * 3 2 1 5 5 C 1.38353 * 121.08106 * 359.97438 * 4 3 2 6 6 C 1.38360 * 119.30672 * 0.27078 * 5 4 3 7 7 C 1.39532 * 119.71595 * 179.97438 * 2 1 3 8 8 C 1.47819 * 120.56044 * 0.04512 * 7 2 1 9 9 O 1.21577 * 119.99723 * 5.99239 * 8 7 2 10 10 N 1.34772 * 119.99899 * 185.98999 * 8 7 2 11 11 C 1.40527 * 119.99938 * 180.02562 * 10 8 7 12 12 C 1.40660 * 126.08482 * 0.02630 * 11 10 8 13 13 N 1.30909 * 108.38486 * 180.02562 * 12 11 10 14 14 N 1.40064 * 108.41548 * 359.97438 * 13 12 11 15 15 C 1.37311 * 126.07095 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00242 * 179.97438 * 15 14 13 17 17 C 1.38989 * 119.99848 * 359.97438 * 15 14 13 18 18 N 1.31295 * 120.00191 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00206 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46584 * 89.99907 * 19 17 15 21 21 H 1.48499 * 109.47317 * 209.99954 * 19 17 15 22 22 H 1.48500 * 109.46696 * 330.00073 * 19 17 15 23 23 C 1.35708 * 126.08320 * 179.71232 * 11 10 8 24 24 H 1.09003 * 109.46970 * 96.57295 * 1 2 3 25 25 H 1.08994 * 109.46917 * 216.57701 * 1 2 3 26 26 H 1.09000 * 109.46675 * 336.57523 * 1 2 3 27 27 H 1.08002 * 119.46184 * 180.02562 * 4 3 2 28 28 H 1.08003 * 120.35142 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.85599 * 179.75043 * 6 5 4 30 30 H 0.97000 * 120.00111 * 359.97438 * 10 8 7 31 31 H 1.07995 * 125.80931 * 359.97438 * 12 11 10 32 32 H 0.96992 * 120.00466 * 179.97438 * 18 17 15 33 33 H 1.07997 * 126.24714 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1935 0.0005 5 6 4.2367 0.0364 0.0016 6 6 3.5989 -1.1914 -0.0036 7 6 2.1987 -1.2118 0.0005 8 6 1.4658 -2.4955 0.0001 9 8 0.2551 -2.5042 -0.1106 10 7 2.1397 -3.6562 0.1224 11 6 1.4430 -4.8766 0.1215 12 6 0.0506 -5.0356 0.0008 13 7 -0.2240 -6.3149 0.0426 14 7 0.9768 -7.0207 0.1903 15 6 1.1077 -8.3850 0.2735 16 1 2.0863 -8.8277 0.3865 17 6 -0.0192 -9.1963 0.2121 18 7 -1.2089 -8.6581 0.0751 19 14 0.1589 -11.0524 0.3244 20 1 0.0784 -11.4721 1.7466 21 1 -0.9319 -11.7019 -0.4459 22 1 1.4719 -11.4586 -0.2380 23 6 1.9944 -6.1118 0.2308 24 1 -0.3633 -0.1176 -1.0209 25 1 -0.3633 -0.8252 0.6124 26 1 -0.3633 0.9430 0.4086 27 1 3.9735 2.1533 0.0009 28 1 5.3153 0.0910 0.0024 29 1 4.1663 -2.1103 -0.0069 30 1 3.1057 -3.6493 0.2104 31 1 -0.6694 -4.2380 -0.1070 32 1 -1.9953 -9.2242 0.0319 33 1 3.0460 -6.3348 0.3346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731004886.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:24 Heat of formation + Delta-G solvation = 89.917216 kcal Electronic energy + Delta-G solvation = -19611.690294 eV Core-core repulsion = 16446.772331 eV Total energy + Delta-G solvation = -3164.917963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72798 -39.66534 -38.28179 -34.54918 -33.43853 -32.71914 -32.32090 -30.25681 -28.27843 -27.26295 -25.15450 -24.23052 -22.25818 -21.24793 -20.52702 -19.44489 -17.75335 -17.24014 -16.55859 -16.13837 -15.49181 -15.12233 -14.94425 -14.73328 -13.94395 -13.93465 -13.37796 -13.23256 -13.09925 -12.93923 -12.34556 -12.26770 -11.86018 -11.70648 -11.42198 -11.28281 -10.95319 -10.55430 -10.25228 -9.96616 -9.77539 -9.21652 -9.10656 -8.99204 -8.83662 -8.09372 -6.73842 -6.58653 -4.25758 0.63817 1.07609 2.86743 3.03110 3.04662 3.08625 3.47135 3.57294 3.84061 3.86053 4.23176 4.42181 4.58260 4.62601 4.66942 4.84336 4.99422 5.05381 5.36041 5.46833 5.69212 5.87308 5.91379 6.08465 6.20236 6.27680 6.41415 6.62082 6.86015 6.91733 7.08018 7.20276 7.80887 7.83353 8.11131 8.23229 8.58201 8.77994 9.34003 9.63303 10.37226 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.049763 B = 0.003681 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.532012 B = 7605.673608 C = 8149.975660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.186 3.814 3 N -0.492 5.492 4 C 0.118 3.882 5 C -0.190 4.190 6 C -0.045 4.045 7 C -0.175 4.175 8 C 0.543 3.457 9 O -0.523 6.523 10 N -0.615 5.615 11 C -0.062 4.062 12 C -0.030 4.030 13 N -0.260 5.260 14 N -0.141 5.141 15 C -0.323 4.323 16 H 0.117 0.883 17 C 0.046 3.954 18 N -0.768 5.768 19 Si 0.935 3.065 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.084 4.084 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.158 0.842 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.395 0.605 31 H 0.178 0.822 32 H 0.275 0.725 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.419 11.971 0.311 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.048 3.952 3 N -0.202 5.202 4 C -0.039 4.039 5 C -0.210 4.210 6 C -0.072 4.072 7 C -0.180 4.180 8 C 0.330 3.670 9 O -0.402 6.402 10 N -0.256 5.256 11 C -0.168 4.168 12 C -0.205 4.205 13 N -0.091 5.091 14 N 0.092 4.908 15 C -0.455 4.455 16 H 0.134 0.866 17 C -0.171 4.171 18 N -0.395 5.395 19 Si 0.759 3.241 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.235 4.235 24 H 0.102 0.898 25 H 0.125 0.875 26 H 0.084 0.916 27 H 0.175 0.825 28 H 0.157 0.843 29 H 0.156 0.844 30 H 0.229 0.771 31 H 0.194 0.806 32 H 0.086 0.914 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.895 11.768 0.174 14.172 hybrid contribution 2.131 -0.948 0.097 2.334 sum 10.026 10.819 0.271 14.753 Atomic orbital electron populations 1.21078 0.87391 1.03818 1.04446 1.21567 0.97751 0.86460 0.89399 1.67657 1.09910 1.28847 1.13744 1.22931 0.89562 0.98621 0.92831 1.22040 1.01618 0.93119 1.04189 1.21798 0.93302 0.98913 0.93141 1.20901 0.94261 0.95413 1.07461 1.17761 0.87194 0.82757 0.79333 1.90627 1.13315 1.86183 1.50035 1.42385 1.09277 1.04072 1.69903 1.17249 0.92267 0.83434 1.23828 1.24140 0.93458 0.95384 1.07537 1.78267 1.03576 1.02001 1.25292 1.44557 1.02822 1.04928 1.38508 1.19885 0.95926 0.77009 1.52726 0.86584 1.25649 0.94573 1.01430 0.95459 1.70210 0.98122 1.36373 1.34772 0.85821 0.78920 0.80442 0.78931 1.19564 1.20054 1.18802 1.21250 0.94095 0.88310 1.19837 0.89840 0.87488 0.91570 0.82506 0.84348 0.84446 0.77143 0.80556 0.91400 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 8.88 36.01 0.32 -1.23 16 2 C 0.19 2.69 6.82 -82.17 -0.56 2.13 16 3 N -0.49 -6.51 10.26 -9.14 -0.09 -6.61 16 4 C 0.12 1.19 11.17 -17.47 -0.20 0.99 16 5 C -0.19 -1.71 10.10 -39.49 -0.40 -2.10 16 6 C -0.05 -0.49 9.63 -38.86 -0.37 -0.86 16 7 C -0.17 -2.50 5.89 -104.82 -0.62 -3.12 16 8 C 0.54 9.59 7.68 -12.34 -0.09 9.49 16 9 O -0.52 -10.71 10.52 5.30 0.06 -10.65 16 10 N -0.61 -10.82 5.42 -10.86 -0.06 -10.88 16 11 C -0.06 -1.41 6.90 -83.86 -0.58 -1.99 16 12 C -0.03 -0.77 10.85 -17.03 -0.18 -0.95 16 13 N -0.26 -7.50 10.39 30.80 0.32 -7.18 16 14 N -0.14 -3.83 3.74 -11.41 -0.04 -3.87 16 15 C -0.32 -8.46 10.25 -14.82 -0.15 -8.61 16 16 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 17 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.29 11.81 55.50 0.66 -20.64 16 19 Si 0.94 18.71 29.55 -169.99 -5.02 13.68 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 23 C -0.08 -1.94 11.49 -16.38 -0.19 -2.13 16 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.11 1.69 5.85 -51.93 -0.30 1.38 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 29 H 0.14 1.13 6.57 -52.49 -0.34 0.79 16 30 H 0.39 5.32 6.97 -40.82 -0.28 5.04 16 31 H 0.18 4.49 5.91 -52.49 -0.31 4.18 16 32 H 0.28 6.97 8.31 -40.82 -0.34 6.64 16 33 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 290.06 15.07 4.37 4.37 Total: -1.00 -33.09 290.06 -5.84 -38.93 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -2.90 Total: 10.15 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.12 Total: -7.30 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.78 Total: -49.17 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.06 Total: -10.65 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.09 -5.84 -38.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731004886.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.844 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds