Wall clock time and date at job start Mon Mar 30 2020 01:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31696 * 119.71782 * 2 1 4 4 C 1.31923 * 121.88120 * 179.97438 * 3 2 1 5 5 C 1.38353 * 121.08106 * 359.97438 * 4 3 2 6 6 C 1.38360 * 119.30672 * 0.27078 * 5 4 3 7 7 C 1.39532 * 119.71595 * 179.97438 * 2 1 3 8 8 C 1.47819 * 120.56044 * 0.04512 * 7 2 1 9 9 O 1.21577 * 119.99723 * 5.99239 * 8 7 2 10 10 N 1.34772 * 119.99899 * 185.98999 * 8 7 2 11 11 C 1.40527 * 119.99938 * 180.02562 * 10 8 7 12 12 C 1.40660 * 126.08482 * 0.02630 * 11 10 8 13 13 N 1.30909 * 108.38486 * 180.02562 * 12 11 10 14 14 N 1.40064 * 108.41548 * 359.97438 * 13 12 11 15 15 C 1.37311 * 126.07095 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00242 * 179.97438 * 15 14 13 17 17 C 1.38989 * 119.99848 * 359.97438 * 15 14 13 18 18 N 1.31295 * 120.00191 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00206 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46584 * 89.99907 * 19 17 15 21 21 H 1.48499 * 109.47317 * 209.99954 * 19 17 15 22 22 H 1.48500 * 109.46696 * 330.00073 * 19 17 15 23 23 C 1.35708 * 126.08320 * 179.71232 * 11 10 8 24 24 H 1.09003 * 109.46970 * 96.57295 * 1 2 3 25 25 H 1.08994 * 109.46917 * 216.57701 * 1 2 3 26 26 H 1.09000 * 109.46675 * 336.57523 * 1 2 3 27 27 H 1.08002 * 119.46184 * 180.02562 * 4 3 2 28 28 H 1.08003 * 120.35142 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.85599 * 179.75043 * 6 5 4 30 30 H 0.97000 * 120.00111 * 359.97438 * 10 8 7 31 31 H 1.07995 * 125.80931 * 359.97438 * 12 11 10 32 32 H 0.96992 * 120.00466 * 179.97438 * 18 17 15 33 33 H 1.07997 * 126.24714 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1935 0.0005 5 6 4.2367 0.0364 0.0016 6 6 3.5989 -1.1914 -0.0036 7 6 2.1987 -1.2118 0.0005 8 6 1.4658 -2.4955 0.0001 9 8 0.2551 -2.5042 -0.1106 10 7 2.1397 -3.6562 0.1224 11 6 1.4430 -4.8766 0.1215 12 6 0.0506 -5.0356 0.0008 13 7 -0.2240 -6.3149 0.0426 14 7 0.9768 -7.0207 0.1903 15 6 1.1077 -8.3850 0.2735 16 1 2.0863 -8.8277 0.3865 17 6 -0.0192 -9.1963 0.2121 18 7 -1.2089 -8.6581 0.0751 19 14 0.1589 -11.0524 0.3244 20 1 0.0784 -11.4721 1.7466 21 1 -0.9319 -11.7019 -0.4459 22 1 1.4719 -11.4586 -0.2380 23 6 1.9944 -6.1118 0.2308 24 1 -0.3633 -0.1176 -1.0209 25 1 -0.3633 -0.8252 0.6124 26 1 -0.3633 0.9430 0.4086 27 1 3.9735 2.1533 0.0009 28 1 5.3153 0.0910 0.0024 29 1 4.1663 -2.1103 -0.0069 30 1 3.1057 -3.6493 0.2104 31 1 -0.6694 -4.2380 -0.1070 32 1 -1.9953 -9.2242 0.0319 33 1 3.0460 -6.3348 0.3346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731004886.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:24 Heat of formation + Delta-G solvation = 66.673771 kcal Electronic energy + Delta-G solvation = -19612.698205 eV Core-core repulsion = 16446.772331 eV Total energy + Delta-G solvation = -3165.925874 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.98265 -41.26533 -39.70912 -36.11277 -35.14585 -33.77842 -33.40936 -32.19507 -29.84170 -28.55133 -26.87870 -25.41429 -23.28471 -22.94583 -22.04470 -21.20993 -19.39618 -18.59237 -17.63749 -17.41623 -17.10209 -16.49805 -16.36721 -16.00973 -15.48414 -15.38470 -14.82358 -14.75525 -14.44687 -14.08356 -13.48820 -13.45732 -13.35056 -13.17803 -12.92770 -12.87843 -12.77876 -12.08187 -11.85891 -11.02125 -10.92760 -10.85518 -10.77902 -10.35268 -10.10765 -9.97504 -8.52985 -8.46601 -6.23940 -0.33356 0.21953 1.26923 1.40604 1.58314 1.63622 1.91827 2.00730 2.24761 2.49247 2.87148 2.89791 3.09866 3.34902 3.68077 3.76594 3.88586 4.11525 4.43093 4.49603 4.61484 4.64762 4.71417 4.76587 5.00410 5.02114 5.09852 5.13254 5.22736 5.30224 5.48923 5.69065 5.95859 6.30977 6.67322 6.73864 6.93064 7.31989 7.46471 7.67986 8.52737 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.049763 B = 0.003681 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.532012 B = 7605.673608 C = 8149.975660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.167 3.833 3 N -0.513 5.513 4 C 0.120 3.880 5 C -0.172 4.172 6 C -0.040 4.040 7 C -0.197 4.197 8 C 0.543 3.457 9 O -0.558 6.558 10 N -0.607 5.607 11 C -0.047 4.047 12 C -0.057 4.057 13 N -0.311 5.311 14 N -0.168 5.168 15 C -0.354 4.354 16 H 0.142 0.858 17 C -0.007 4.007 18 N -0.825 5.825 19 Si 1.019 2.981 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.243 1.243 23 C -0.078 4.078 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.196 0.804 28 H 0.184 0.816 29 H 0.166 0.834 30 H 0.417 0.583 31 H 0.170 0.830 32 H 0.276 0.724 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.558 12.545 0.500 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.030 3.970 3 N -0.223 5.223 4 C -0.037 4.037 5 C -0.191 4.191 6 C -0.066 4.066 7 C -0.203 4.203 8 C 0.331 3.669 9 O -0.439 6.439 10 N -0.252 5.252 11 C -0.153 4.153 12 C -0.232 4.232 13 N -0.143 5.143 14 N 0.064 4.936 15 C -0.485 4.485 16 H 0.160 0.840 17 C -0.218 4.218 18 N -0.452 5.452 19 Si 0.838 3.162 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.166 1.166 23 C -0.229 4.229 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.213 0.787 28 H 0.202 0.798 29 H 0.183 0.817 30 H 0.255 0.745 31 H 0.186 0.814 32 H 0.086 0.914 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 12.089 12.383 0.366 17.309 hybrid contribution 0.989 -0.832 0.038 1.293 sum 13.079 11.551 0.404 17.454 Atomic orbital electron populations 1.20923 0.88461 1.03356 1.03524 1.21501 0.97615 0.87236 0.90654 1.67678 1.11826 1.28080 1.14726 1.23707 0.88550 1.00981 0.90495 1.22524 1.03731 0.91551 1.01333 1.22173 0.91626 1.01200 0.91620 1.20615 0.95851 0.93051 1.10771 1.18419 0.87020 0.83819 0.77607 1.90622 1.15283 1.86867 1.51088 1.42252 1.10258 1.02357 1.70358 1.17307 0.91225 0.85399 1.21345 1.24207 0.95364 0.94736 1.08919 1.78160 1.05783 1.03275 1.27036 1.44844 1.03056 1.05798 1.39936 1.20636 0.97439 0.77137 1.53322 0.84046 1.26886 0.93772 1.07016 0.94164 1.70396 0.99282 1.38552 1.37015 0.84588 0.79497 0.73070 0.79016 1.18924 1.20314 1.16637 1.22002 0.95468 0.87657 1.17759 0.90657 0.89892 0.90403 0.78739 0.79823 0.81659 0.74462 0.81353 0.91414 0.79302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.12 8.88 71.24 0.63 -2.49 16 2 C 0.17 4.75 6.82 42.89 0.29 5.04 16 3 N -0.51 -12.54 10.26 -182.83 -1.88 -14.42 16 4 C 0.12 1.90 11.17 84.71 0.95 2.85 16 5 C -0.17 -2.18 10.10 22.33 0.23 -1.96 16 6 C -0.04 -0.71 9.63 22.73 0.22 -0.49 16 7 C -0.20 -5.39 5.89 -19.99 -0.12 -5.51 16 8 C 0.54 19.24 7.68 86.78 0.67 19.91 16 9 O -0.56 -24.06 10.52 -3.96 -0.04 -24.10 16 10 N -0.61 -20.71 5.42 -306.54 -1.66 -22.37 16 11 C -0.05 -2.12 6.90 37.75 0.26 -1.86 16 12 C -0.06 -3.10 10.85 85.42 0.93 -2.18 16 13 N -0.31 -18.74 10.39 -56.46 -0.59 -19.33 16 14 N -0.17 -9.25 3.74 -190.00 -0.71 -9.96 16 15 C -0.35 -18.61 10.25 84.02 0.86 -17.75 16 16 H 0.14 6.38 7.83 -2.91 -0.02 6.36 16 17 C -0.01 -0.35 5.50 84.95 0.47 0.12 16 18 N -0.82 -47.65 11.81 21.66 0.26 -47.39 16 19 Si 1.02 38.32 29.55 68.60 2.03 40.35 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 21 H -0.28 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.24 -8.24 7.11 99.48 0.71 -7.53 16 23 C -0.08 -3.56 11.49 83.38 0.96 -2.60 16 24 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.08 2.84 5.85 -2.39 -0.01 2.82 16 26 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.20 1.53 8.06 -2.91 -0.02 1.50 16 28 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 29 H 0.17 1.91 6.57 -2.91 -0.02 1.89 16 30 H 0.42 10.04 6.97 -92.71 -0.65 9.40 16 31 H 0.17 9.23 5.91 -2.91 -0.02 9.21 16 32 H 0.28 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.19 6.62 8.06 -2.91 -0.02 6.59 16 Total: -1.00 -77.88 290.06 4.27 -73.62 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.52 Total: 30.53 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 6.34 Total: -6.92 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.58 Total: -113.47 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.04 Total: -24.10 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -77.88 4.27 -73.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731004886.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.290 kcal (2) G-P(sol) polarization free energy of solvation -77.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds