Wall clock time and date at job start Mon Mar 30 2020 01:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 180.02562 * 4 3 2 6 6 N 1.30294 * 126.34215 * 90.02201 * 5 4 3 7 7 N 1.28516 * 110.08257 * 179.97438 * 6 5 4 8 8 C 1.31291 * 109.85600 * 0.02562 * 7 6 5 9 9 S 1.76196 * 126.48338 * 180.02562 * 8 7 6 10 10 C 1.80998 * 100.00480 * 359.97430 * 9 8 7 11 11 C 1.52996 * 109.47173 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.46801 * 180.02562 * 11 10 9 13 13 H 1.07993 * 119.99883 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99597 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99811 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00455 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47303 * 90.00244 * 16 14 12 18 18 H 1.48498 * 109.47353 * 210.00661 * 16 14 12 19 19 H 1.48503 * 109.47139 * 330.00356 * 16 14 12 20 20 N 1.36532 * 107.02751 * 359.77530 * 8 7 6 21 21 N 1.36606 * 127.14190 * 180.22687 * 20 8 7 22 22 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 23 23 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 26 26 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 27 27 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 28 28 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 29 29 H 1.09001 * 109.47020 * 300.00581 * 10 9 8 30 30 H 1.09000 * 109.46847 * 60.00015 * 10 9 8 31 31 H 1.08996 * 109.47645 * 299.99855 * 11 10 9 32 32 H 1.08995 * 109.46961 * 60.00772 * 11 10 9 33 33 H 0.97001 * 119.99903 * 179.97438 * 15 14 12 34 34 H 1.00898 * 111.00221 * 270.14597 * 21 20 8 35 35 H 1.00902 * 110.99498 * 34.10518 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0013 6 7 4.4623 3.2664 1.0511 7 7 4.9647 4.3934 0.6918 8 6 4.9981 4.4693 -0.6185 9 16 5.6011 5.8209 -1.5746 10 6 6.1026 6.9455 -0.2480 11 6 6.6753 8.2275 -0.8555 12 6 7.0934 9.1636 0.2491 13 1 6.9632 8.8732 1.2811 14 6 7.6411 10.3911 -0.0579 15 7 8.0055 11.2082 0.9061 16 14 7.8655 10.8937 -1.8430 17 1 6.6465 11.5973 -2.3162 18 1 9.0364 11.7996 -1.9587 19 1 8.0922 9.6834 -2.6732 20 7 4.4825 3.3003 -1.0999 21 7 4.3299 2.9437 -2.4098 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6885 1.8465 -0.8900 26 1 1.6885 1.8463 0.8900 27 1 3.8567 0.6439 0.8908 28 1 3.8574 0.6437 -0.8892 29 1 5.2370 7.1897 0.3678 30 1 6.8626 6.4647 0.3679 31 1 7.5409 7.9829 -1.4710 32 1 5.9156 8.7085 -1.4716 33 1 8.3911 12.0717 0.6900 34 1 3.4291 3.2328 -2.7607 35 1 5.0760 3.3191 -2.9759 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742458924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:12 Heat of formation + Delta-G solvation = 43.676490 kcal Electronic energy + Delta-G solvation = -17930.352718 eV Core-core repulsion = 14898.873558 eV Total energy + Delta-G solvation = -3031.479160 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.03895 -38.29024 -36.61818 -33.86102 -33.55539 -31.38004 -29.90057 -29.43013 -26.79921 -25.67676 -23.86249 -23.11726 -21.24093 -20.84376 -18.56339 -17.67131 -17.11679 -16.85315 -16.75626 -16.17373 -15.53010 -15.08387 -14.58088 -14.21227 -14.04942 -13.83621 -13.41120 -12.84177 -12.46423 -12.08315 -11.95318 -11.72143 -11.61413 -11.50488 -11.32775 -10.83818 -10.54104 -10.37519 -10.25242 -10.05878 -9.98175 -9.79274 -9.70760 -9.35563 -8.66462 -7.58376 -6.15574 -4.16822 1.09843 1.45208 2.06599 2.42553 2.65669 3.22862 3.29087 3.31013 3.32311 4.03311 4.33886 4.49037 4.65198 4.73000 4.95289 5.02999 5.03139 5.14315 5.16625 5.27564 5.30210 5.51813 5.69218 5.78727 5.86202 5.90867 6.15169 6.40354 6.72362 6.92737 7.04311 7.18138 7.55628 8.37295 8.53587 8.87801 9.43086 10.97004 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.003232 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.858865 B = 8661.219943 C = 8950.380718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.069 3.931 4 C -0.023 4.023 5 C 0.203 3.797 6 N -0.274 5.274 7 N -0.275 5.275 8 C 0.139 3.861 9 S -0.050 6.050 10 C -0.059 4.059 11 C 0.001 3.999 12 C -0.520 4.520 13 H 0.079 0.921 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.878 3.122 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.265 1.265 20 N -0.311 5.311 21 N -0.583 5.583 22 H 0.041 0.959 23 H 0.088 0.912 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.028 0.972 32 H 0.022 0.978 33 H 0.266 0.734 34 H 0.363 0.637 35 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 -20.219 -8.411 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.008 4.008 4 C -0.063 4.063 5 C -0.066 4.066 6 N -0.115 5.115 7 N -0.120 5.120 8 C -0.236 4.236 9 S 0.179 5.821 10 C -0.207 4.207 11 C -0.039 4.039 12 C -0.560 4.560 13 H 0.097 0.903 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.705 3.295 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.189 1.189 20 N -0.095 5.095 21 N -0.213 5.213 22 H 0.060 0.940 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.180 0.820 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -12.148 -20.439 -7.853 25.040 hybrid contribution -0.346 1.175 -1.333 1.811 sum -12.494 -19.264 -9.186 24.730 Atomic orbital electron populations 1.22756 0.80566 1.02900 1.00193 1.87832 1.20033 1.27435 1.95497 1.22392 0.92651 0.84923 1.00878 1.19727 0.92828 0.87570 1.06151 1.24505 1.03895 0.97373 0.80847 1.74118 1.14334 1.00223 1.22802 1.74837 1.18220 1.12609 1.06292 1.27624 1.06069 0.93346 0.96539 1.85442 1.75595 1.07873 1.13151 1.23802 1.04805 0.96419 0.95685 1.19453 0.96167 0.90494 0.97739 1.20876 1.41789 0.99860 0.93507 0.90340 1.24960 0.94629 0.96122 0.97322 1.69892 1.41930 1.09424 1.32027 0.86806 0.78157 0.78955 0.85603 1.20062 1.21050 1.18947 1.45210 1.48810 1.12048 1.03387 1.59776 1.10582 1.61447 0.89543 0.94044 0.89388 0.93826 0.93379 0.92350 0.87457 0.88202 0.88857 0.88774 0.95423 0.95929 0.92404 0.81953 0.80365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.63 10.70 -35.23 -0.38 -4.01 16 3 C 0.07 0.63 5.92 37.16 0.22 0.85 16 4 C -0.02 -0.23 6.13 -27.88 -0.17 -0.40 16 5 C 0.20 2.75 7.43 -154.00 -1.14 1.60 16 6 N -0.27 -4.70 12.17 33.00 0.40 -4.30 16 7 N -0.27 -5.17 11.60 30.68 0.36 -4.82 16 8 C 0.14 2.26 8.13 -88.34 -0.72 1.54 16 9 S -0.05 -0.79 21.98 -107.50 -2.36 -3.15 16 10 C -0.06 -1.17 5.17 37.16 0.19 -0.98 16 11 C 0.00 0.03 4.04 -27.88 -0.11 -0.08 16 12 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 13 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 15 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 16 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 20 N -0.31 -4.02 3.81 -9.93 -0.04 -4.06 16 21 N -0.58 -5.05 10.39 60.35 0.63 -4.42 16 22 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.91 8.14 -51.92 -0.42 1.48 16 30 H 0.09 1.94 8.14 -51.92 -0.42 1.51 16 31 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 32 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 34 H 0.36 2.33 9.21 -181.36 -1.67 0.66 16 35 H 0.38 2.93 8.80 -181.36 -1.60 1.33 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -32.65 318.17 -8.97 -41.62 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -7.42 Total: -2.75 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.05 Total: -8.93 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 2.12 Total: -43.80 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.38 Total: -4.01 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.36 Total: -3.15 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.65 -8.97 -41.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742458924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.297 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds