Wall clock time and date at job start Mon Mar 30 2020 01:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 180.02562 * 4 3 2 6 6 N 1.30294 * 126.34215 * 90.02201 * 5 4 3 7 7 N 1.28516 * 110.08257 * 179.97438 * 6 5 4 8 8 C 1.31291 * 109.85600 * 0.02562 * 7 6 5 9 9 S 1.76196 * 126.48338 * 180.02562 * 8 7 6 10 10 C 1.80998 * 100.00480 * 359.97430 * 9 8 7 11 11 C 1.52996 * 109.47173 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.46801 * 180.02562 * 11 10 9 13 13 H 1.07993 * 119.99883 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99597 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99811 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00455 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47303 * 90.00244 * 16 14 12 18 18 H 1.48498 * 109.47353 * 210.00661 * 16 14 12 19 19 H 1.48503 * 109.47139 * 330.00356 * 16 14 12 20 20 N 1.36532 * 107.02751 * 359.77530 * 8 7 6 21 21 N 1.36606 * 127.14190 * 180.22687 * 20 8 7 22 22 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 23 23 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 26 26 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 27 27 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 28 28 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 29 29 H 1.09001 * 109.47020 * 300.00581 * 10 9 8 30 30 H 1.09000 * 109.46847 * 60.00015 * 10 9 8 31 31 H 1.08996 * 109.47645 * 299.99855 * 11 10 9 32 32 H 1.08995 * 109.46961 * 60.00772 * 11 10 9 33 33 H 0.97001 * 119.99903 * 179.97438 * 15 14 12 34 34 H 1.00898 * 111.00221 * 270.14597 * 21 20 8 35 35 H 1.00902 * 110.99498 * 34.10518 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0013 6 7 4.4623 3.2664 1.0511 7 7 4.9647 4.3934 0.6918 8 6 4.9981 4.4693 -0.6185 9 16 5.6011 5.8209 -1.5746 10 6 6.1026 6.9455 -0.2480 11 6 6.6753 8.2275 -0.8555 12 6 7.0934 9.1636 0.2491 13 1 6.9632 8.8732 1.2811 14 6 7.6411 10.3911 -0.0579 15 7 8.0055 11.2082 0.9061 16 14 7.8655 10.8937 -1.8430 17 1 6.6465 11.5973 -2.3162 18 1 9.0364 11.7996 -1.9587 19 1 8.0922 9.6834 -2.6732 20 7 4.4825 3.3003 -1.0999 21 7 4.3299 2.9437 -2.4098 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6885 1.8465 -0.8900 26 1 1.6885 1.8463 0.8900 27 1 3.8567 0.6439 0.8908 28 1 3.8574 0.6437 -0.8892 29 1 5.2370 7.1897 0.3678 30 1 6.8626 6.4647 0.3679 31 1 7.5409 7.9829 -1.4710 32 1 5.9156 8.7085 -1.4716 33 1 8.3911 12.0717 0.6900 34 1 3.4291 3.2328 -2.7607 35 1 5.0760 3.3191 -2.9759 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742458924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:12 Heat of formation + Delta-G solvation = 21.038829 kcal Electronic energy + Delta-G solvation = -17931.334360 eV Core-core repulsion = 14898.873558 eV Total energy + Delta-G solvation = -3032.460803 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.18682 -38.95026 -37.60919 -35.82340 -34.46253 -33.37619 -30.93823 -30.39116 -27.73033 -27.27808 -24.74343 -24.29534 -22.84105 -22.06597 -19.64947 -19.15206 -18.60238 -17.89088 -17.56018 -16.91886 -16.46097 -16.36981 -16.00484 -15.70362 -15.43937 -14.83977 -14.81374 -14.33287 -13.81996 -13.21723 -13.10033 -13.01515 -12.81494 -12.40149 -12.27537 -12.21215 -12.16824 -12.03762 -11.77770 -11.63991 -11.31638 -11.15203 -10.80800 -10.69609 -10.68257 -8.84789 -8.32221 -6.39946 -0.16462 0.34005 0.91741 1.07982 1.37361 1.39557 1.46793 1.50729 2.34384 2.55262 3.02245 3.20907 3.61295 3.82865 4.01440 4.09348 4.10887 4.17075 4.23604 4.33470 4.53375 4.54756 4.63748 4.67880 4.87818 4.89451 4.99039 5.12923 5.22103 5.50736 5.51197 6.11423 6.19197 6.26414 6.66908 7.24077 7.34921 8.84262 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.003232 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.858865 B = 8661.219943 C = 8950.380718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.075 3.925 4 C -0.019 4.019 5 C 0.223 3.777 6 N -0.314 5.314 7 N -0.319 5.319 8 C 0.122 3.878 9 S 0.018 5.982 10 C -0.066 4.066 11 C 0.008 3.992 12 C -0.534 4.534 13 H 0.033 0.967 14 C 0.008 3.992 15 N -0.947 5.947 16 Si 0.952 3.048 17 H -0.263 1.263 18 H -0.283 1.283 19 H -0.240 1.240 20 N -0.303 5.303 21 N -0.570 5.570 22 H 0.052 0.948 23 H 0.103 0.897 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.269 0.731 34 H 0.380 0.620 35 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.685 -21.894 -11.812 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.003 4.003 4 C -0.058 4.058 5 C -0.048 4.048 6 N -0.155 5.155 7 N -0.164 5.164 8 C -0.255 4.255 9 S 0.247 5.753 10 C -0.215 4.215 11 C -0.032 4.032 12 C -0.574 4.574 13 H 0.051 0.949 14 C -0.190 4.190 15 N -0.587 5.587 16 Si 0.774 3.226 17 H -0.188 1.188 18 H -0.209 1.209 19 H -0.163 1.163 20 N -0.085 5.085 21 N -0.204 5.204 22 H 0.070 0.930 23 H 0.121 0.879 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.200 0.800 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.211 -22.140 -11.266 28.136 hybrid contribution -0.115 1.529 -0.229 1.550 sum -13.326 -20.611 -11.495 27.103 Atomic orbital electron populations 1.22959 0.79099 1.04172 1.00844 1.87801 1.21646 1.27289 1.95604 1.22272 0.91913 0.85109 1.00978 1.19864 0.93369 0.85421 1.07168 1.25078 1.01765 0.97758 0.80197 1.74027 1.16173 1.00560 1.24729 1.74740 1.19695 1.13944 1.08014 1.27693 1.06888 0.94578 0.96347 1.84879 1.75364 1.06056 1.09047 1.23409 1.03849 0.96950 0.97323 1.19279 0.96836 0.90852 0.96217 1.21194 1.41766 1.01275 0.93176 0.94896 1.26013 0.94121 0.95996 1.02824 1.70061 1.43432 1.10174 1.34999 0.85641 0.78451 0.79406 0.79122 1.18763 1.20868 1.16304 1.45245 1.47665 1.10594 1.04978 1.59917 1.12033 1.60810 0.87629 0.92963 0.87899 0.93614 0.92248 0.93349 0.87147 0.86433 0.90303 0.90388 0.94432 0.94547 0.92193 0.79993 0.79385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.66 10.70 -148.98 -1.59 -8.26 16 3 C 0.08 1.21 5.92 71.98 0.43 1.64 16 4 C -0.02 -0.33 6.13 29.85 0.18 -0.14 16 5 C 0.22 5.69 7.43 137.63 1.02 6.72 16 6 N -0.31 -10.82 12.17 -49.52 -0.60 -11.42 16 7 N -0.32 -12.15 11.60 -56.85 -0.66 -12.81 16 8 C 0.12 3.80 8.13 179.55 1.46 5.26 16 9 S 0.02 0.52 21.98 -56.49 -1.24 -0.72 16 10 C -0.07 -2.65 5.17 71.98 0.37 -2.28 16 11 C 0.01 0.34 4.04 29.85 0.12 0.46 16 12 C -0.53 -30.51 9.66 25.60 0.25 -30.26 16 13 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 14 C 0.01 0.48 5.47 84.65 0.46 0.94 16 15 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 16 Si 0.95 42.38 27.47 68.60 1.88 44.26 16 17 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 20 N -0.30 -7.18 3.81 -185.32 -0.71 -7.88 16 21 N -0.57 -7.92 10.39 37.02 0.38 -7.54 16 22 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 23 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 30 H 0.08 3.33 8.14 -2.40 -0.02 3.31 16 31 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 32 H 0.04 1.55 7.57 -2.39 -0.02 1.53 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.38 3.39 9.21 -210.56 -1.94 1.45 16 35 H 0.39 4.55 8.80 -210.55 -1.85 2.69 16 Total: -1.00 -73.30 318.17 0.58 -72.72 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -2.73 Total: 6.40 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 5.54 Total: -16.14 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -1.28 Total: -98.28 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -1.59 Total: -8.26 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.26 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -1.24 Total: -0.72 kcal Total: -73.30 0.58 -72.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742458924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.764 kcal (2) G-P(sol) polarization free energy of solvation -73.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds